genome.fa.s3.2.7.7.80.10.50.1000.127.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr8
Parameters: 2 7 7 80 10 50 1000
Length:  70076365

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   

This is table  127  of  210  ( 25174 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42350527--42350602	38	2.0	38	100	0	152	36	13	15	34	1.87
42354997--42355063	33	2.0	34	94	2	118	40	10	11	37	1.77
42355270--42355336	27	2.5	27	85	0	89	8	32	32	25	1.87
42357934--42357973	20	2.0	20	100	0	80	35	30	15	20	1.93
42372063--42372116	28	2.0	27	92	3	90	48	5	1	44	1.37
42372065--42372122	27	2.1	27	87	6	82	50	6	1	41	1.39
42376130--42376210	29	2.8	29	76	0	81	19	23	16	40	1.90
42377806--42377849	22	2.0	23	90	4	72	68	9	0	22	1.18
42390024--42390263	117	2.0	119	97	2	459	52	10	5	30	1.59
42390250--42390316	23	2.8	23	80	8	62	61	1	2	34	1.20
42390271--42390314	17	2.6	16	82	7	52	63	0	2	34	1.07
42401939--42402042	30	3.4	30	67	13	77	38	1	21	38	1.64
42408451--42408507	29	1.9	30	96	3	107	38	0	42	19	1.51
42408666--42408696	9	3.4	9	90	0	53	38	22	12	25	1.90
42409596--42409652	29	2.0	29	86	6	80	42	14	8	35	1.76
42416081--42416138	18	3.2	19	79	13	68	18	1	24	55	1.52
42421594--42421671	22	3.5	22	94	0	138	32	29	0	38	1.58
42421643--42421701	30	2.0	30	93	0	100	30	35	0	33	1.58
42421621--42421723	52	2.0	51	86	5	145	33	33	0	33	1.58
42421673--42421714	22	1.9	22	90	0	66	33	33	0	33	1.58
42424468--42424593	23	5.0	23	74	17	117	46	23	1	28	1.61
42424468--42424593	51	2.5	49	83	10	148	46	23	1	28	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42424468--42424577	28	4.1	28	78	11	140	47	23	0	28	1.58
42432804--42432892	27	3.3	27	82	0	106	35	23	10	30	1.88
42434597--42434742	41	3.6	41	93	0	229	30	24	19	25	1.98
42434597--42434769	82	2.1	82	84	2	222	30	24	18	26	1.98
42442326--42442354	11	2.7	11	94	5	51	27	0	0	72	0.85
42442477--42442522	18	2.8	18	75	18	55	0	28	39	32	1.57
42450862--42450904	22	2.0	22	90	0	68	0	30	0	69	0.88
42450864--42450901	18	2.2	17	95	4	67	0	31	0	68	0.90
42450973--42451075	27	3.8	27	88	2	145	19	36	25	18	1.94
42450973--42451075	54	1.9	54	90	4	163	19	36	25	18	1.94
42456016--42456061	3	15.0	3	82	13	58	32	2	0	65	1.05
42456016--42456060	15	3.0	15	84	9	65	33	2	0	64	1.06
42456087--42456151	22	2.8	23	75	17	71	35	6	4	53	1.46
42456087--42456151	24	2.8	24	75	13	73	35	6	4	53	1.46
42456116--42456187	30	2.4	28	80	11	74	34	9	8	47	1.67
42456075--42456181	51	2.0	51	87	5	151	32	9	7	50	1.62
42457653--42457678	3	8.7	3	100	0	52	34	0	0	65	0.93
42461636--42461731	41	2.3	41	94	0	165	22	23	17	35	1.95
42470846--42470870	5	5.0	5	100	0	50	40	20	20	20	1.92
42477042--42477533	246	2.0	247	93	0	842	42	11	16	29	1.84
42477614--42477677	21	3.1	20	75	8	67	31	7	12	48	1.69
42494248--42494287	22	1.9	21	85	10	55	47	20	2	30	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42494779--42494943	34	4.8	36	77	9	173	37	25	19	17	1.93
42494776--42494998	69	3.2	69	85	1	288	33	25	21	19	1.97
42498096--42498136	18	2.3	18	80	12	50	24	0	2	73	0.96
42503429--42503515	42	2.1	42	84	0	111	27	20	17	34	1.95
42509485--42509526	15	2.7	16	82	10	52	59	9	23	7	1.53
42525465--42525509	20	2.3	19	85	14	56	68	0	4	26	1.08
42525465--42525509	21	2.2	20	84	11	56	68	0	4	26	1.08
42543135--42543183	25	2.0	25	91	0	80	32	18	20	28	1.96
42558650--42558760	42	2.7	41	80	1	114	41	18	25	15	1.89
42560531--42560744	106	2.0	107	99	0	421	51	6	12	29	1.63
42562081--42562145	16	4.1	16	90	6	87	41	3	33	21	1.69
42562079--42562143	32	2.0	32	88	5	96	40	3	33	23	1.70
42562748--42562887	47	3.0	47	70	17	148	46	4	2	46	1.37
42562725--42562848	44	2.8	44	72	17	119	47	2	3	46	1.31
42563087--42563136	24	2.1	24	96	0	91	26	14	20	40	1.90
42574436--42574461	5	5.2	5	100	0	52	80	0	19	0	0.71
42576381--42576437	30	1.9	30	89	7	89	36	1	1	59	1.18
42576451--42576497	20	2.3	20	85	10	60	31	0	0	68	0.90
42587137--42587193	21	2.8	21	86	5	73	17	26	15	40	1.90
42598364--42598432	31	2.3	31	97	2	131	31	15	5	46	1.70
42599357--42599400	23	1.9	23	90	0	70	61	4	2	31	1.28
42599361--42599403	11	3.8	11	80	17	52	65	2	2	30	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42603056--42603165	30	3.7	30	77	9	107	30	3	19	46	1.67
42611263--42611299	17	2.1	19	85	10	51	54	18	0	27	1.44
42631590--42631649	30	2.0	31	83	6	79	16	43	1	38	1.58
42638549--42638683	69	2.0	68	94	1	234	41	14	13	30	1.84
42639176--42639261	9	9.4	9	87	7	111	39	26	11	22	1.88
42642588--42642650	32	2.0	32	83	0	81	31	30	19	19	1.96
42645013--42645072	30	2.0	29	84	9	77	43	5	21	30	1.74
42645194--42645513	50	6.4	50	82	2	390	26	22	30	20	1.98
42645197--42645513	101	3.1	101	90	0	465	26	22	29	20	1.99
42649009--42649037	9	3.2	9	100	0	58	10	0	68	20	1.18
42649009--42649043	18	1.9	18	88	0	52	11	2	65	20	1.37
42650440--42650507	24	3.1	24	65	30	69	42	19	5	32	1.75
42656881--42656981	51	2.0	51	98	0	193	39	22	9	27	1.86
42660999--42661064	25	2.7	25	78	2	71	19	27	22	30	1.98
42661081--42661163	25	3.2	25	81	5	85	21	25	21	31	1.98
42663142--42663302	25	6.4	25	72	11	98	33	20	24	21	1.97
42663342--42663387	23	2.0	23	86	0	65	26	23	30	19	1.98
42663368--42663438	26	2.8	26	84	2	90	35	22	25	16	1.95
42678692--42678749	25	2.3	26	79	11	66	65	1	5	27	1.23
42687354--42687510	53	3.1	53	67	12	166	41	4	4	49	1.43
42687323--42687523	99	2.0	100	99	0	395	38	4	4	51	1.45
42687353--42687551	99	2.1	99	86	3	244	41	7	6	45	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42688427--42688464	3	12.7	3	100	0	76	68	0	0	31	0.90
42695665--42695806	31	4.6	31	75	5	135	43	16	9	30	1.80
42695645--42695857	61	3.4	61	81	8	209	43	17	7	30	1.77
42695690--42696080	31	12.7	32	72	12	275	44	18	6	30	1.75
42695703--42696130	92	4.7	92	86	2	522	43	18	7	30	1.77
42696131--42696184	25	2.2	25	86	6	74	48	12	11	27	1.76
42701468--42701563	34	2.8	34	85	0	111	44	15	7	32	1.74
42709007--42709050	18	2.4	18	100	0	88	25	25	18	31	1.97
42709173--42709777	43	14.1	43	93	0	1030	30	26	21	21	1.99
42709785--42709838	21	2.6	21	87	0	81	5	46	18	29	1.72
42709890--42709940	21	2.4	21	90	0	75	3	43	17	35	1.68
42718806--42718850	23	2.0	23	82	8	56	40	31	6	22	1.80
42719593--42719637	23	2.0	23	82	8	56	40	31	6	22	1.80
42720499--42720577	41	1.9	41	86	0	113	30	25	21	22	1.99
42720590--42720793	113	1.8	113	94	0	363	25	23	24	27	2.00
42723417--42723483	23	2.9	23	97	0	125	26	23	25	23	2.00
42726236--42726279	16	2.7	17	89	6	65	31	2	0	65	1.05
42726236--42726285	16	3.1	17	86	11	61	36	2	0	62	1.07
42729926--42729989	28	2.3	28	94	0	110	20	21	15	42	1.89
42729976--42730156	24	7.5	24	76	5	143	19	27	21	30	1.98
42730072--42730164	25	3.8	25	78	8	84	21	26	20	31	1.98
42730067--42730181	25	4.6	25	74	10	76	20	27	20	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42732231--42732258	9	3.1	9	100	0	56	64	10	10	14	1.50
42733177--42733221	22	2.0	22	100	0	90	22	8	17	51	1.73
42737446--42737517	25	2.9	25	79	8	76	19	27	19	33	1.96
42740401--42740457	15	3.5	15	71	17	51	47	3	1	47	1.29
42743413--42743538	61	2.1	61	84	0	162	38	6	15	40	1.72
42743925--42743958	12	2.9	12	95	4	61	35	0	0	64	0.94
42759022--42759175	77	2.0	78	98	1	301	42	12	11	32	1.80
42759534--42759563	15	2.0	15	93	0	51	66	16	0	16	1.25
42761540--42761624	44	1.9	44	87	0	125	30	21	17	30	1.96
42761916--42762096	50	3.6	50	71	5	168	25	25	21	27	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210