genome.fa.s3.2.7.7.80.10.50.1000.113.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr8
Parameters: 2 7 7 80 10 50 1000
Length:  70076365

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   

This is table  113  of  210  ( 25174 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38021368--38021422	26	2.1	26	93	0	92	29	1	27	41	1.66
38021374--38021423	26	1.9	26	100	0	100	22	2	28	48	1.62
38055602--38055696	33	3.0	33	80	7	124	37	2	17	42	1.62
38057288--38057373	45	1.9	45	95	0	154	19	22	26	31	1.98
38062469--38062797	115	2.9	113	83	2	392	27	20	25	26	1.99
38062581--38062965	188	2.0	188	86	2	531	26	20	25	27	1.99
38062700--38062866	74	2.3	74	86	1	228	27	19	26	26	1.99
38062973--38063052	41	2.0	41	89	0	124	20	20	33	26	1.96
38063533--38063613	21	3.9	21	72	3	65	22	0	39	38	1.54
38063546--38063573	14	2.0	14	100	0	56	14	0	50	35	1.43
38066123--38066167	21	2.1	21	87	0	63	35	17	40	6	1.76
38066507--38066802	43	6.9	43	86	3	375	22	19	31	27	1.98
38070429--38070517	42	2.1	42	87	0	124	23	23	31	21	1.98
38076603--38076672	26	2.7	26	84	2	79	35	18	27	18	1.94
38076626--38076692	26	2.6	26	80	4	73	34	22	23	19	1.97
38077161--38077201	21	2.0	21	85	9	57	41	24	2	31	1.68
38078297--38078338	21	2.0	21	86	9	59	40	19	40	0	1.51
38078890--38078936	17	2.8	17	77	3	51	29	2	14	53	1.53
38080182--38080506	46	7.1	46	94	0	517	36	8	25	30	1.85
38082641--38082678	19	2.0	19	85	10	51	42	0	15	42	1.47
38082890--38082956	24	2.8	24	93	0	107	47	4	14	32	1.65
38083180--38083228	9	5.4	9	80	9	55	75	4	16	4	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38083180--38083228	18	2.7	18	84	6	64	75	4	16	4	1.11
38084161--38084248	23	4.0	23	85	7	128	19	19	21	39	1.92
38087529--38087593	23	3.0	22	84	8	89	38	23	21	16	1.93
38088596--38088716	59	2.0	60	98	1	235	38	21	3	36	1.70
38089938--38090354	208	2.0	209	99	0	827	43	6	17	31	1.75
38090461--38090495	17	2.0	18	88	5	54	48	2	5	42	1.41
38106625--38106673	24	2.0	26	84	8	66	61	2	8	28	1.36
38107857--38107917	27	2.3	27	94	0	104	37	9	8	44	1.68
38109981--38110011	2	15.5	2	100	0	62	48	0	51	0	1.00
38112426--38112457	16	2.0	16	100	0	64	37	12	18	31	1.88
38113543--38113577	16	2.1	17	89	5	54	40	2	20	37	1.67
38128277--38128469	50	3.8	50	78	8	176	27	20	26	25	1.99
38128333--38128472	49	2.8	52	79	8	182	27	22	26	24	2.00
38136899--38136966	25	2.8	23	72	12	55	16	22	22	39	1.92
38137083--38137157	25	3.0	24	73	7	60	20	24	18	37	1.94
38137083--38137180	50	1.9	51	81	6	119	19	23	19	37	1.94
38138040--38138080	20	2.0	20	100	0	82	19	19	24	36	1.95
38141209--38141233	13	1.9	13	100	0	50	40	4	8	48	1.51
38141222--38141367	69	2.1	69	86	9	201	31	4	4	60	1.34
38147250--38148287	364	2.8	362	89	5	1527	45	13	13	27	1.80
38148167--38148207	14	3.2	13	80	12	50	80	7	2	9	0.99
38148176--38148215	20	1.9	20	85	10	53	80	7	5	7	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38148375--38148437	32	2.0	32	83	0	81	63	4	0	31	1.15
38148412--38148484	25	3.0	25	85	2	94	76	8	2	12	1.10
38148412--38148483	11	6.2	11	77	16	74	77	8	1	12	1.04
38153041--38153074	3	11.3	3	100	0	68	32	0	32	35	1.58
38160900--38160928	6	4.8	6	100	0	58	17	0	0	82	0.66
38177865--38177910	23	2.1	22	84	8	58	32	10	2	54	1.47
38180575--38180657	21	4.1	20	73	17	73	60	0	1	38	1.05
38180606--38180684	11	7.5	11	77	17	71	59	0	2	37	1.11
38180591--38180702	40	2.8	39	90	4	188	60	0	1	37	1.07
38184641--38184690	3	16.7	3	100	0	100	68	0	32	0	0.90
38191221--38191290	22	3.2	22	70	25	76	22	5	0	71	1.07
38191212--38191292	43	1.9	42	94	2	144	25	4	0	69	1.09
38191222--38191290	21	3.1	22	73	26	74	21	5	0	72	1.05
38191503--38191540	19	2.1	18	95	5	67	76	0	5	18	0.97
38193850--38193932	21	4.0	21	87	0	121	28	21	33	15	1.94
38195187--38195256	36	1.9	36	100	0	140	35	10	20	34	1.86
38198046--38198169	27	4.5	27	74	13	99	34	15	25	25	1.94
38198047--38198159	28	4.0	27	76	10	93	35	14	23	26	1.93
38202449--38202556	31	3.5	31	76	8	96	32	11	12	44	1.77
38202467--38202555	29	3.0	29	77	9	90	32	11	12	43	1.78
38202872--38202932	21	2.9	21	83	13	65	49	3	3	44	1.35
38213188--38213219	3	10.7	3	100	0	64	34	0	0	65	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38224717--38224762	24	1.9	24	100	0	92	15	4	19	60	1.51
38226576--38226743	23	7.3	23	84	0	228	22	22	24	30	1.99
38226576--38226743	46	3.7	46	96	0	300	22	22	24	30	1.99
38247455--38247630	87	2.0	88	98	1	345	22	22	32	22	1.98
38250468--38250508	21	2.0	21	85	0	55	31	24	0	43	1.54
38252192--38252229	18	2.1	18	95	0	67	23	26	10	39	1.87
38253784--38253854	27	2.7	26	78	4	79	50	18	9	21	1.75
38253795--38253955	27	6.0	26	79	9	146	40	19	17	22	1.91
38253782--38253923	54	2.6	54	82	3	162	44	19	15	21	1.87
38255931--38255964	18	1.9	18	88	5	52	61	5	2	29	1.34
38258065--38258113	25	2.0	25	91	0	80	28	16	0	55	1.42
38258066--38258124	25	2.4	25	85	5	75	27	18	0	54	1.44
38258195--38258868	126	5.4	125	87	2	897	27	17	15	39	1.90
38258650--38258695	14	3.2	14	78	3	56	34	17	2	45	1.61
38258195--38258868	251	2.7	249	87	3	922	27	17	15	39	1.90
38258965--38259086	28	4.4	27	81	15	124	41	15	0	42	1.47
38258985--38259107	29	4.4	27	81	10	122	40	21	0	37	1.54
38258985--38259107	28	4.4	28	80	10	92	40	21	0	37	1.54
38262751--38262816	21	3.2	21	85	8	84	43	18	24	13	1.86
38262787--38262838	21	2.5	21	87	0	68	46	15	19	19	1.85
38264928--38264959	2	16.0	2	100	0	64	50	0	0	50	1.00
38266982--38267018	2	18.5	2	94	0	65	48	0	2	48	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38267016--38267280	132	2.0	133	97	2	507	44	21	6	27	1.77
38269668--38269780	37	3.1	37	80	11	99	39	2	4	53	1.35
38269686--38269820	68	2.0	69	86	1	191	39	4	5	50	1.47
38271834--38271913	36	2.2	36	95	0	142	12	16	36	35	1.86
38282393--38282512	62	1.9	62	94	0	213	25	17	14	43	1.86
38283112--38283439	163	2.0	164	99	0	649	32	17	12	37	1.86
38291065--38291193	43	3.0	43	80	10	154	23	16	27	32	1.96
38293911--38293939	15	1.9	15	100	0	58	0	6	3	89	0.57
38296329--38296361	6	5.5	6	100	0	66	18	48	18	15	1.81
38301588--38301630	21	2.0	21	82	8	52	23	9	11	55	1.64
38308110--38308157	17	2.9	17	90	3	71	27	0	18	54	1.44
38309442--38309471	13	2.3	13	94	0	51	16	3	33	46	1.64
38320237--38320357	60	2.0	61	98	1	235	36	2	13	47	1.56
38329701--38329844	41	3.5	41	85	8	202	61	0	2	34	1.15
38329810--38329835	11	2.4	11	100	0	52	53	0	7	38	1.30
38329701--38329844	40	3.5	40	84	8	191	61	0	2	34	1.15
38341176--38341242	35	1.9	35	93	0	116	25	25	4	44	1.72
38342478--38342538	11	5.5	11	79	11	61	31	24	0	44	1.54
38344765--38344830	32	2.1	32	97	0	123	30	15	4	50	1.64
38344866--38344974	32	3.4	33	80	8	125	38	7	9	44	1.64
38349480--38349641	35	4.6	35	85	0	189	39	33	12	14	1.83
38352931--38352997	20	3.3	20	72	4	62	22	28	14	34	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38352894--38353039	41	3.6	41	83	0	168	21	26	15	36	1.93
38355496--38355671	46	3.8	46	90	0	271	35	9	25	30	1.87
38362916--38363070	41	3.8	40	91	1	229	23	20	23	32	1.98
38362916--38363100	82	2.3	82	84	3	212	24	20	23	31	1.98
38366653--38366718	25	2.7	25	92	2	107	21	30	36	12	1.90
38371081--38371146	13	5.1	13	80	7	80	33	6	22	37	1.79
38382099--38382239	69	2.0	69	93	0	237	36	11	17	35	1.85
38383260--38383312	24	2.2	24	83	6	63	45	1	5	47	1.37
38386063--38386128	20	3.3	20	66	8	62	33	19	33	13	1.91
38386047--38386184	40	3.5	40	90	0	213	29	18	30	21	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210