genome.fa.s3.2.7.7.80.10.50.1000.170.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr8
Parameters: 2 7 7 80 10 50 1000
Length:  70076365

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   

This is table  170  of  210  ( 25174 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56566277--56573585	736	10.0	735	86	3	9813	36	15	19	28	1.93
56568290--56573585	735	7.3	736	86	3	7294	36	15	19	28	1.93
56580634--56580682	24	2.1	23	85	11	64	44	12	20	22	1.84
56582293--56584123	736	2.5	735	93	1	3096	36	15	20	27	1.93
56585292--56585489	43	4.7	42	76	10	190	22	17	26	33	1.96
56585292--56585489	85	2.4	84	91	1	308	22	17	26	33	1.96
56591686--56591718	13	2.7	13	90	9	52	36	12	15	36	1.84
56592776--56593016	42	5.7	41	72	13	177	24	15	24	35	1.94
56592785--56593016	43	5.5	41	73	14	170	23	15	25	35	1.95
56592785--56593023	85	2.8	84	83	1	307	23	17	24	34	1.96
56594357--56597703	734	4.5	736	88	3	4891	35	16	19	28	1.93
56601671--56601708	13	2.9	13	88	7	51	31	15	23	28	1.96
56608352--56608429	30	2.6	30	77	6	86	46	10	25	17	1.80
56622619--56622659	10	4.1	10	90	0	55	58	4	0	36	1.20
56625342--56625417	25	3.0	25	82	0	89	31	18	18	31	1.95
56628632--56628798	30	5.6	30	78	11	155	38	11	26	23	1.88
56628606--56628828	90	2.5	91	80	12	239	37	13	25	23	1.91
56628606--56628798	60	3.2	59	71	14	162	37	11	25	24	1.89
56628606--56628828	60	3.7	59	70	13	152	37	13	25	23	1.91
56628787--56628858	30	2.4	30	85	0	90	40	15	23	20	1.91
56628670--56628859	90	2.1	90	84	4	242	37	14	25	22	1.92
56629946--56630034	42	2.1	42	81	4	99	19	15	38	26	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56630932--56630990	25	2.4	25	97	0	109	49	27	5	18	1.68
56635056--56635087	16	2.0	16	100	0	64	25	18	0	56	1.42
56635571--56635614	19	2.3	19	88	4	70	52	25	0	22	1.48
56636213--56636358	75	1.9	75	80	2	168	45	12	13	28	1.80
56636476--56636637	75	2.2	75	80	6	184	49	12	11	25	1.75
56636106--56636626	268	1.9	268	98	0	1006	46	13	11	28	1.78
56648590--56648634	12	3.8	12	81	0	54	15	35	22	26	1.94
56651808--56651872	33	2.0	33	100	0	130	38	18	15	27	1.91
56652199--56652229	2	15.5	2	93	0	53	51	3	0	45	1.17
56656644--56656699	21	2.8	20	79	12	62	57	1	3	37	1.27
56657205--56657365	80	2.0	80	98	0	313	25	27	12	34	1.92
56662633--56662694	20	3.1	19	78	17	63	35	12	27	24	1.92
56666696--56666763	27	2.6	27	86	4	95	30	11	10	47	1.74
56666908--56666944	6	6.2	6	87	0	56	16	21	0	62	1.33
56666908--56666944	18	2.1	18	100	0	74	16	21	0	62	1.33
56667957--56668084	44	2.9	43	78	7	139	64	6	1	27	1.26
56667979--56668011	17	2.0	16	94	5	57	60	0	3	36	1.12
56668033--56668118	26	3.4	25	82	4	109	67	4	2	25	1.22
56668033--56668119	25	3.4	25	80	3	102	66	4	2	26	1.23
56667957--56668275	50	6.8	46	72	21	193	63	3	3	29	1.29
56668109--56668268	49	3.2	49	76	15	148	61	2	5	30	1.32
56668143--56668277	26	5.3	25	78	11	116	63	2	4	29	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56668841--56668877	6	6.2	6	87	0	56	16	21	0	62	1.33
56668841--56668877	18	2.1	18	100	0	74	16	21	0	62	1.33
56669890--56670017	44	2.9	43	78	7	139	64	6	1	27	1.26
56669912--56669944	17	2.0	16	94	5	57	60	0	3	36	1.12
56669966--56670051	26	3.4	25	82	4	109	67	4	2	25	1.22
56669966--56670052	25	3.4	25	80	3	102	66	4	2	26	1.23
56669890--56670205	45	6.9	46	70	19	182	62	4	3	29	1.31
56670076--56670208	26	5.6	24	68	15	80	63	3	4	28	1.28
56670074--56670202	69	1.9	69	80	9	156	63	3	4	28	1.29
56670155--56670214	24	2.4	25	80	2	77	63	3	5	28	1.31
56671841--56672684	44	18.7	44	72	11	381	28	20	20	30	1.98
56671876--56672322	185	2.5	181	79	7	444	26	19	21	32	1.97
56672289--56672683	181	2.2	180	84	3	506	29	22	18	29	1.98
56672333--56672682	89	3.9	89	72	11	266	29	22	18	29	1.97
56672514--56672682	43	3.8	43	78	5	142	31	23	17	27	1.97
56675617--56675660	14	3.2	14	77	6	54	63	4	0	31	1.14
56675601--56675859	25	10.3	26	73	17	165	63	4	3	28	1.30
56675601--56675859	26	10.3	25	74	16	207	63	4	3	28	1.30
56675602--56675868	50	5.4	49	77	14	246	62	4	4	29	1.32
56682289--56682355	25	2.6	25	81	13	82	16	7	1	74	1.11
56684575--56684649	34	2.2	34	97	0	141	56	13	2	28	1.51
56685667--56685822	69	2.3	69	82	4	190	23	24	16	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56690165--56690293	43	3.0	43	75	4	125	32	26	17	23	1.97
56694859--56694975	43	2.7	43	82	5	155	23	17	25	33	1.96
56695121--56695153	15	2.1	16	94	5	59	36	0	21	42	1.53
56700743--56700812	11	6.0	11	75	18	70	37	22	8	31	1.85
56700743--56700812	24	3.0	24	73	19	76	37	22	8	31	1.85
56705015--56705172	41	3.9	41	89	3	239	24	27	19	29	1.98
56706860--56706884	13	1.9	13	100	0	50	68	24	0	8	1.16
56709809--56709866	15	3.7	15	73	11	53	55	5	1	37	1.33
56710886--56710920	4	8.2	4	90	9	52	22	0	5	71	1.07
56713987--56714201	107	2.0	108	99	0	423	42	9	5	42	1.60
56716056--56716092	17	2.2	17	90	4	58	54	0	0	45	1.00
56723170--56723295	63	2.0	64	93	3	218	41	20	11	26	1.86
56724669--56725539	45	19.4	45	84	1	1082	28	23	18	29	1.98
56726909--56727287	189	2.0	189	99	0	749	25	16	19	38	1.92
56730715--56731030	157	2.0	158	98	1	616	35	16	20	27	1.94
56731836--56732042	75	2.7	77	86	3	283	33	26	17	22	1.96
56731938--56732172	102	2.3	104	88	3	348	33	26	18	21	1.97
56739335--56739388	27	2.0	28	92	3	92	22	24	27	25	2.00
56739367--56739601	33	6.7	33	68	21	122	21	19	27	31	1.97
56739335--56739565	102	2.3	102	91	0	372	21	19	27	31	1.97
56742160--56742194	16	2.2	16	89	0	52	42	22	17	17	1.88
56743948--56743977	3	10.0	3	92	0	51	66	3	0	30	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56745994--56746042	24	2.0	24	100	0	98	34	16	12	36	1.86
56756991--56757024	16	2.1	16	94	0	59	11	35	0	52	1.38
56757567--56757669	53	1.9	53	100	0	206	37	16	21	24	1.93
56757673--56757710	18	2.1	18	100	0	76	21	5	21	52	1.66
56757965--56757998	11	3.1	11	100	0	68	35	11	8	44	1.72
56766035--56766204	30	5.7	30	76	13	125	22	25	11	40	1.88
56766023--56766235	90	2.4	88	82	5	239	22	24	13	39	1.90
56766023--56766231	60	3.5	60	72	7	208	22	24	12	39	1.89
56771922--56771961	21	1.9	21	89	0	62	40	10	12	37	1.77
56773031--56773120	20	4.5	20	80	9	94	32	6	13	47	1.68
56773450--56773486	18	2.1	18	89	0	56	40	0	2	56	1.13
56773474--56773515	21	2.0	21	90	4	68	35	2	4	57	1.33
56786971--56787008	18	2.1	18	100	0	76	57	0	18	23	1.40
56788690--56788801	27	4.1	27	83	3	145	44	19	14	21	1.86
56788987--56789090	26	4.0	26	73	0	82	18	18	22	41	1.90
56789204--56789306	30	3.5	29	82	2	118	22	27	24	26	2.00
56799751--56799789	18	2.1	19	85	4	53	33	2	2	61	1.23
56801646--56801691	23	2.0	23	100	0	92	39	4	17	39	1.69
56811045--56811083	14	2.8	14	96	0	69	7	12	12	66	1.43
56811656--56811824	27	6.3	27	86	1	214	44	19	17	17	1.86
56811656--56811824	54	3.1	54	88	0	248	44	19	17	17	1.86
56811656--56811806	81	1.9	81	90	0	239	45	21	17	15	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56812222--56812288	28	2.4	28	84	0	89	23	22	25	28	1.99
56814221--56814265	18	2.5	18	88	0	63	35	20	6	37	1.79
56815355--56815385	14	2.2	14	94	0	53	45	3	6	45	1.45
56822215--56822263	10	4.8	10	79	20	57	30	2	6	61	1.32
56826430--56826669	50	4.7	50	86	3	291	26	22	30	20	1.98
56832132--56832175	5	8.2	5	80	14	52	79	2	18	0	0.83
56832130--56832175	11	4.2	11	84	15	60	78	2	19	0	0.86
56832132--56832175	16	2.7	16	89	3	61	79	2	18	0	0.83
56833461--56833507	25	2.0	23	84	16	60	8	27	4	59	1.45
56845348--56845399	27	1.9	27	84	7	70	7	21	0	71	1.11

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210