genome.fa.s3.2.7.7.80.10.50.1000.163.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr8
Parameters: 2 7 7 80 10 50 1000
Length:  70076365

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   

This is table  163  of  210  ( 25174 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54737106--54737131	13	2.0	13	100	0	52	53	0	0	46	1.00
54737201--54737247	23	2.1	22	84	11	60	57	6	6	29	1.49
54739034--54739449	44	9.7	44	74	9	333	29	20	19	31	1.97
54739034--54739446	85	4.8	86	73	10	335	29	20	19	31	1.97
54739034--54739441	128	3.2	128	95	0	708	29	20	19	31	1.97
54741486--54741515	14	2.1	14	100	0	60	13	60	13	13	1.60
54758216--54758313	40	2.5	40	84	0	124	23	28	17	30	1.97
54770402--54770451	26	2.0	25	85	11	68	62	8	4	26	1.41
54772361--54772644	44	6.3	44	73	10	171	27	23	18	31	1.97
54772632--54772658	14	1.9	14	100	0	54	33	44	0	22	1.53
54781729--54781760	6	5.3	6	100	0	64	18	0	0	81	0.70
54784835--54784867	14	2.4	14	90	10	50	30	0	0	69	0.88
54784906--54784951	24	1.9	24	90	0	74	54	6	6	32	1.52
54786119--54786151	14	2.4	14	90	10	50	30	0	0	69	0.88
54789089--54789126	17	2.2	17	90	0	58	5	18	0	76	0.97
54789526--54789563	17	2.2	17	90	0	58	5	18	0	76	0.97
54788863--54789736	437	2.0	437	99	0	1739	33	13	7	45	1.71
54798940--54799014	36	2.1	36	94	0	132	28	14	12	45	1.80
54801807--54801984	27	6.4	27	71	7	97	26	26	19	26	1.99
54801748--54801998	111	2.3	111	90	0	385	25	26	19	28	1.99
54801970--54802044	28	2.7	28	91	0	123	22	22	18	36	1.95
54802031--54802187	29	5.6	29	68	13	94	26	23	19	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54802112--54802239	57	2.2	57	83	6	152	28	23	17	31	1.97
54802359--54802515	53	3.1	53	76	9	180	24	19	14	40	1.89
54804249--54804277	3	9.7	3	100	0	58	0	65	0	34	0.93
54805214--54805398	51	3.7	50	79	6	212	28	28	18	24	1.98
54805212--54805396	101	1.8	101	91	3	309	29	27	18	24	1.98
54813622--54813673	22	2.4	21	79	17	54	38	0	5	55	1.24
54813942--54813974	16	2.1	16	94	0	57	21	33	6	39	1.78
54825262--54825441	89	2.0	90	98	1	353	45	8	3	42	1.52
54825431--54825482	26	2.0	26	100	0	104	57	7	0	34	1.27
54825306--54825492	89	2.2	87	81	6	202	52	9	1	36	1.43
54825530--54825623	27	3.5	27	89	2	136	26	28	27	17	1.97
54825705--54825742	11	3.5	11	89	7	60	68	0	31	0	0.90
54825768--54825806	19	2.0	21	85	10	55	23	0	10	66	1.22
54825852--54825886	3	11.3	3	87	6	52	31	0	5	62	1.18
54825885--54825925	3	13.7	3	94	0	73	0	2	29	68	1.03
54828993--54829047	18	3.1	18	76	5	58	0	29	0	70	0.87
54828986--54829082	22	4.3	24	67	16	66	1	28	0	70	0.94
54829025--54829088	4	16.0	4	79	12	69	1	26	0	71	0.94
54829831--54829889	23	2.6	22	82	10	75	44	20	3	32	1.68
54834978--54835031	22	2.5	22	82	8	74	46	18	3	31	1.67
54842743--54842794	18	2.8	19	74	11	54	51	0	0	48	1.00
54845645--54845690	16	2.9	16	90	0	74	21	32	4	41	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54847221--54847550	6	55.0	6	100	0	660	50	0	0	50	1.00
54848903--54848940	12	3.2	12	88	0	58	63	0	2	34	1.09
54848867--54848962	43	2.2	42	85	12	124	57	1	5	36	1.28
54850345--54850393	26	1.9	25	84	12	64	69	8	8	14	1.36
54857509--54857551	17	2.8	14	80	19	50	48	0	0	51	1.00
54857503--54857553	18	3.0	18	83	11	63	50	0	0	49	1.00
54857521--54857559	18	2.2	18	86	4	53	56	0	0	43	0.99
54866450--54866477	6	4.7	6	100	0	56	50	14	17	17	1.79
54866724--54866997	111	2.5	111	85	4	351	43	18	20	18	1.89
54866724--54867050	111	3.0	109	77	8	333	43	18	21	17	1.89
54868641--54868805	89	1.8	88	83	6	215	38	7	4	49	1.50
54869072--54869115	19	2.4	19	80	3	54	31	2	6	59	1.36
54878141--54879014	132	6.6	132	93	0	1428	24	24	19	31	1.98
54877933--54879014	264	4.1	264	92	1	1736	24	24	19	30	1.98
54877933--54879014	396	2.8	394	91	1	1759	24	24	19	30	1.98
54891088--54891144	26	2.3	25	84	6	71	59	5	7	28	1.45
54891094--54891144	26	2.0	26	88	0	75	58	5	7	27	1.49
54905596--54905626	16	1.9	16	93	0	53	64	0	6	29	1.18
54907189--54907381	85	2.3	84	83	7	232	29	20	21	29	1.98
54907436--54907947	100	5.1	100	91	0	808	26	24	20	28	1.99
54907469--54907950	50	9.6	50	75	0	415	26	24	20	28	1.99
54920567--54920593	14	1.9	14	100	0	54	25	0	0	74	0.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54920568--54920600	11	3.1	11	91	4	50	24	0	3	72	0.98
54921683--54921721	15	2.5	17	88	12	57	66	0	10	23	1.22
54922488--54922836	30	11.7	29	74	11	190	38	13	24	23	1.90
54930180--54930480	30	10.1	29	77	7	196	38	13	25	23	1.91
54930180--54930480	60	5.1	60	74	8	249	38	13	25	23	1.91
54930180--54930494	119	2.6	119	80	7	329	37	13	25	22	1.91
54930180--54930480	149	2.0	149	88	2	453	38	13	25	23	1.91
54935165--54935225	25	2.4	25	86	0	86	32	18	19	29	1.95
54935157--54935250	25	3.8	25	76	5	82	30	20	21	27	1.98
54942262--54942287	8	3.2	8	100	0	52	42	11	23	23	1.86
54944383--54944407	11	2.3	11	100	0	50	48	8	0	44	1.32
54948583--54948613	7	4.3	7	95	4	53	41	16	0	41	1.48
54949045--54949120	38	2.0	38	92	0	125	35	18	18	27	1.94
54955577--54955624	17	2.9	16	82	14	53	2	25	0	72	0.95
54956342--54956390	19	2.5	20	87	12	75	51	0	14	34	1.43
54956342--54956398	19	3.0	19	84	5	53	45	0	15	38	1.47
54959780--54959893	39	2.9	39	85	0	156	46	22	2	28	1.65
54969578--54969621	21	2.1	21	100	0	88	25	9	9	56	1.59
54988671--54988697	2	13.5	2	100	0	54	48	0	0	51	1.00
54994699--54994919	27	8.3	27	86	1	293	41	21	18	18	1.91
54994704--54994919	106	2.0	108	91	1	355	40	22	18	18	1.91
54996371--54996555	51	3.7	50	78	9	187	24	19	28	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54996566--54996653	45	2.0	45	88	0	131	27	17	20	35	1.94
55001921--55002081	51	3.2	51	79	2	164	23	18	24	33	1.97
55007101--55007125	6	4.2	6	100	0	50	36	0	48	16	1.46
55016579--55016608	16	1.9	16	93	6	53	50	20	0	30	1.49
55028786--55028827	22	2.0	21	85	4	57	33	4	23	38	1.76
55036378--55036456	35	2.3	34	82	2	95	21	27	24	26	1.99
55042937--55042969	17	1.9	18	88	11	52	42	12	0	45	1.41
55042945--55043092	73	2.0	74	98	1	289	37	22	4	35	1.74
55047415--55047454	10	3.9	11	81	15	50	22	7	5	65	1.38
55056528--55056749	97	2.3	97	84	6	294	44	8	11	35	1.71
55057367--55057416	24	2.0	24	84	11	64	64	8	12	16	1.49
55058466--55058535	14	5.1	14	82	6	90	15	1	34	48	1.54
55058458--55058567	28	4.2	26	77	9	116	16	2	32	48	1.60
55059556--55059598	5	9.0	5	90	10	72	60	0	0	39	0.97
55061903--55061927	12	2.1	12	100	0	50	48	0	8	44	1.32
55063723--55063763	19	2.2	19	95	0	73	26	12	0	60	1.31
55069236--55069279	23	2.0	22	86	4	61	50	15	4	29	1.64
55069983--55070013	7	4.4	7	100	0	62	58	12	0	29	1.35
55081542--55081581	20	2.0	20	100	0	80	45	25	20	10	1.81
55093201--55093245	7	6.4	7	92	0	72	55	0	4	40	1.20
55093216--55093578	180	2.0	181	99	0	719	37	5	13	43	1.67
55094827--55094903	38	2.0	39	97	2	147	46	16	10	25	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55100616--55100652	2	18.5	2	94	0	65	51	45	0	2	1.15
55104092--55104185	45	2.1	45	90	4	145	30	24	19	25	1.98
55104191--55104365	51	3.5	50	80	3	190	32	27	16	24	1.96
55104287--55104365	26	3.1	26	64	20	67	31	27	15	25	1.95
55104182--55104365	102	1.8	101	86	3	271	31	27	16	23	1.96
55105989--55106014	11	2.4	11	100	0	52	84	7	0	7	0.77
55107026--55107062	17	2.2	17	90	0	56	70	2	2	24	1.14
55108084--55108176	24	3.9	23	74	13	80	17	26	19	36	1.94
55108105--55108214	49	2.2	50	82	8	134	21	27	18	32	1.96
55108135--55108214	25	3.2	25	76	15	85	22	28	18	30	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210