genome.fa.s3.2.7.7.80.10.50.1000.148.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr8
Parameters: 2 7 7 80 10 50 1000
Length:  70076365

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   

This is table  148  of  210  ( 25174 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49243184--49243212	8	3.6	8	100	0	58	24	0	0	75	0.80
49243606--49243630	12	2.1	12	100	0	50	44	0	24	32	1.54
49245752--49245936	50	3.7	48	78	8	183	23	16	29	30	1.96
49245956--49246045	44	2.0	45	89	2	137	23	16	24	35	1.95
49251795--49251970	45	4.0	45	79	7	198	33	24	15	26	1.95
49251795--49251969	90	2.0	88	85	2	233	33	24	16	26	1.96
49252251--49252307	30	1.9	29	89	3	87	29	21	12	36	1.90
49254391--49254463	29	2.5	29	84	2	92	39	15	26	19	1.90
49254398--49254523	30	4.2	29	72	14	96	42	12	25	19	1.87
49271247--49271317	36	2.0	36	100	0	142	35	0	33	30	1.58
49274850--49274958	25	4.4	25	73	13	98	38	18	20	22	1.93
49286355--49286505	70	2.2	70	91	0	257	27	27	20	25	1.99
49308617--49308673	27	2.1	27	83	3	71	15	12	21	50	1.76
49312487--49312540	27	1.9	29	81	7	67	40	24	5	29	1.77
49328448--49328494	24	2.0	24	100	0	94	51	17	14	17	1.77
49330520--49330568	26	2.0	26	84	8	66	57	6	8	28	1.52
49345452--49345546	49	1.9	49	87	4	138	40	17	18	23	1.92
49345970--49346120	26	5.7	26	83	1	149	33	27	13	25	1.94
49348257--49348295	17	2.3	16	86	8	51	41	5	12	41	1.65
49353620--49353666	25	1.9	24	83	12	60	55	6	2	36	1.37
49355477--49355506	11	2.7	11	94	0	51	86	3	10	0	0.67
49356284--49356333	23	2.3	22	80	16	59	30	4	4	62	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49356300--49356359	25	2.3	25	81	13	68	31	6	3	58	1.40
49361006--49361033	12	2.3	12	100	0	56	71	0	14	14	1.15
49361018--49361062	14	3.1	14	81	6	54	75	0	20	4	0.97
49361873--49361899	13	2.1	13	100	0	54	70	0	14	14	1.17
49361868--49361917	21	2.3	21	86	10	66	70	0	16	14	1.18
49361868--49361917	7	7.0	7	82	17	59	70	0	16	14	1.18
49363208--49364137	128	7.2	128	90	1	1409	33	18	23	25	1.96
49363208--49364147	257	3.7	257	90	2	1442	33	18	22	25	1.97
49364258--49364383	44	2.9	44	86	0	162	32	19	20	27	1.97
49364503--49364862	132	2.7	132	90	1	551	30	17	23	29	1.97
49364536--49364751	44	4.9	43	70	15	136	29	15	24	30	1.96
49364611--49364810	44	4.6	45	69	15	132	28	17	23	30	1.97
49368697--49368735	19	1.9	19	85	10	51	74	5	12	7	1.20
49370155--49370192	15	2.5	15	91	0	67	15	31	34	18	1.92
49371921--49371989	26	2.7	26	93	0	111	23	23	30	23	1.99
49373430--49373507	20	3.9	20	80	9	97	10	23	20	46	1.81
49373430--49373508	40	2.0	40	97	0	149	10	22	20	46	1.80
49373433--49373517	40	2.1	40	91	4	136	11	24	17	45	1.82
49382784--49382843	12	5.0	12	80	6	68	25	16	15	43	1.86
49382785--49382842	24	2.4	24	85	0	80	24	17	15	43	1.87
49384206--49384243	19	2.1	19	90	9	62	2	13	5	78	1.02
49387478--49387578	51	2.0	51	90	3	159	28	19	22	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49392868--49392945	41	1.9	41	86	0	111	35	14	7	42	1.74
49398177--49398238	29	2.1	29	96	0	115	32	3	32	32	1.74
49402744--49402801	13	4.5	13	82	0	71	39	5	24	31	1.77
49405158--49405317	39	4.1	39	79	4	153	34	17	15	33	1.91
49413292--49413332	4	10.2	4	94	0	64	24	4	24	46	1.72
49416578--49416654	14	5.0	15	71	20	52	42	14	9	33	1.77
49416594--49416633	20	2.0	20	90	0	62	50	12	10	27	1.72
49416582--49416648	34	1.9	35	90	3	109	46	13	8	31	1.74
49419051--49419252	99	2.0	99	97	0	377	33	18	22	25	1.97
49425080--49425159	36	2.2	36	84	0	97	33	27	8	30	1.87
49437250--49437300	26	2.0	25	84	3	66	52	3	0	43	1.19
49437455--49437506	16	3.2	16	88	0	77	32	28	1	36	1.69
49454068--49454914	44	19.7	42	70	13	410	31	19	21	27	1.97
49454065--49454876	170	4.8	170	90	3	1235	31	19	21	27	1.98
49454710--49454861	41	3.6	41	71	13	137	28	19	19	31	1.97
49454068--49454870	87	9.4	86	69	13	512	30	19	21	27	1.98
49454760--49455151	131	3.1	129	81	5	438	30	20	20	26	1.97
49460389--49460419	2	15.5	2	100	0	62	51	0	0	48	1.00
49464196--49464251	22	2.5	22	75	16	62	60	8	3	26	1.43
49464701--49464739	3	13.0	3	100	0	78	66	0	0	33	0.92
49466675--49467025	159	2.2	161	85	5	458	37	19	7	35	1.80
49466745--49467156	159	2.5	164	78	10	437	36	19	7	35	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49467353--49467390	19	2.0	19	100	0	76	21	42	0	36	1.53
49468344--49468388	18	2.4	19	85	14	58	55	2	0	42	1.12
49468344--49468398	18	3.0	19	82	15	55	58	1	0	40	1.09
49468603--49468637	14	2.5	14	90	0	61	20	31	34	14	1.92
49468834--49468931	34	2.9	33	86	7	144	37	0	19	42	1.51
49472050--49472098	14	3.6	14	80	2	55	42	34	4	18	1.69
49475722--49475774	27	2.0	27	88	7	81	18	30	20	30	1.97
49488306--49488351	24	1.9	24	95	0	83	36	10	36	15	1.82
49488501--49488961	230	2.0	230	94	0	805	39	12	19	28	1.88
49491870--49491904	13	2.7	13	86	0	52	28	42	11	17	1.83
49494024--49494059	17	2.1	17	100	0	72	55	5	22	16	1.62
49495726--49495852	63	2.0	63	100	0	254	29	11	20	38	1.87
49497328--49497369	22	2.0	21	85	4	57	59	0	33	7	1.25
49499265--49499329	23	2.9	22	77	13	69	24	4	4	66	1.30
49509944--49510373	44	9.8	44	70	16	286	28	19	22	28	1.98
49509900--49510454	173	3.2	173	88	4	746	27	19	23	29	1.98
49510172--49510448	84	3.2	83	69	19	244	26	19	23	30	1.98
49519097--49519296	18	11.1	18	78	0	193	40	15	14	30	1.86
49519097--49519292	54	3.6	54	84	0	221	40	15	14	30	1.87
49527719--49527832	30	3.9	29	84	4	133	25	24	27	22	2.00
49527759--49527848	30	3.1	29	84	7	94	28	21	26	23	1.99
49528227--49528313	27	3.2	27	79	12	99	22	14	18	43	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49530946--49531171	73	3.1	73	100	0	452	39	5	21	34	1.76
49531900--49531950	27	1.9	26	84	11	68	9	33	1	54	1.44
49563608--49563637	15	1.9	16	93	6	53	53	10	0	36	1.35
49582180--49582238	10	5.6	11	82	15	72	74	8	1	15	1.13
49598080--49598265	42	4.4	42	85	5	207	30	21	21	26	1.98
49598101--49598264	85	1.9	85	84	7	217	31	21	21	26	1.98
49602614--49602658	22	2.1	22	95	4	83	33	13	13	40	1.83
49602816--49603158	172	2.0	170	85	5	460	27	10	38	23	1.88
49603702--49603751	25	2.1	23	82	14	57	44	2	6	48	1.39
49604030--49604085	14	4.1	13	82	15	60	50	30	1	17	1.57
49604020--49604080	21	2.9	20	76	13	61	47	32	3	16	1.63
49604423--49604455	16	2.1	15	94	5	57	36	48	0	15	1.45
49604422--49604475	7	7.4	7	77	8	54	37	44	1	16	1.59
49604832--49604975	75	1.9	77	85	2	202	29	25	25	19	1.98
49605074--49605220	72	2.0	72	84	2	188	34	25	18	22	1.96
49607921--49607964	12	3.8	12	85	14	65	29	29	0	40	1.57
49608130--49608161	15	2.1	15	94	0	55	28	0	6	65	1.16
49608111--49608319	107	2.0	107	88	1	312	35	1	11	51	1.48
49608236--49608269	15	2.3	15	90	5	52	26	0	5	67	1.13
49609888--49609922	18	1.9	18	88	0	52	28	34	8	28	1.87
49610396--49610444	22	2.2	23	92	3	82	46	22	0	30	1.52
49610396--49610568	23	6.9	23	69	18	105	46	20	0	32	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49610413--49610480	33	2.1	32	91	2	109	47	14	0	38	1.45
49610440--49610554	28	4.5	28	75	20	124	46	16	0	36	1.47
49610396--49610500	56	1.9	55	94	2	183	46	19	0	34	1.50
49610445--49610568	51	2.6	49	85	11	166	46	19	0	33	1.50
49611030--49611149	23	4.8	24	86	11	109	44	16	0	39	1.48
49611012--49611164	28	5.6	28	87	9	219	45	18	0	35	1.54
49611012--49611164	51	2.9	49	88	6	171	45	18	0	35	1.54
49611177--49611285	56	1.9	56	85	7	150	35	12	10	41	1.77
49613842--49614086	126	2.0	125	92	0	409	31	23	15	29	1.95
49613842--49614124	126	2.3	125	87	3	408	31	23	16	28	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210