genome.fa.s3.2.7.7.80.10.50.1000.151.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr8
Parameters: 2 7 7 80 10 50 1000
Length:  70076365

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   

This is table  151  of  210  ( 25174 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50521696--50521772	20	3.8	20	68	0	55	20	22	22	35	1.96
50521779--50521874	40	2.4	40	80	0	111	21	21	19	36	1.95
50523487--50523727	50	4.7	50	81	5	209	25	26	19	28	1.99
50527661--50527692	17	1.9	16	93	6	55	21	12	31	34	1.91
50527974--50528118	33	4.4	33	100	0	290	30	8	27	33	1.86
50544475--50544516	17	2.5	17	80	7	50	42	4	0	52	1.22
50554870--50554973	43	2.4	44	83	3	131	26	15	24	33	1.95
50554834--50554991	43	3.6	42	76	10	115	25	17	25	31	1.97
50558233--50558453	121	1.8	121	99	0	433	37	11	24	26	1.90
50573330--50573716	100	3.8	102	85	8	474	54	16	0	28	1.47
50573333--50573716	101	3.8	102	87	6	509	54	16	0	28	1.48
50573464--50573615	50	3.0	50	66	14	141	55	16	0	27	1.41
50573344--50573716	201	1.8	202	87	6	558	54	16	0	28	1.48
50573935--50573990	26	2.1	27	83	3	69	57	12	0	30	1.36
50573907--50574025	60	2.0	60	94	0	211	53	13	0	31	1.45
50575610--50575832	101	2.2	104	91	2	362	54	16	0	29	1.43
50577350--50577530	90	2.0	90	90	0	281	30	1	15	51	1.53
50578897--50578930	12	2.8	12	90	4	50	20	2	2	73	1.09
50579372--50579661	103	2.8	104	88	4	408	50	16	0	32	1.50
50580419--50580486	16	4.2	16	74	14	52	60	7	0	32	1.24
50580421--50580491	30	2.4	30	83	2	81	60	7	0	32	1.23
50580499--50580537	19	2.0	20	90	5	62	0	20	0	79	0.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50580502--50580557	22	2.5	22	79	2	67	0	28	0	71	0.86
50584812--50584955	51	2.8	51	85	2	182	23	17	27	31	1.97
50584950--50585044	45	2.1	45	86	0	136	28	17	24	29	1.97
50590229--50590323	41	2.3	41	85	0	127	32	15	29	22	1.95
50596714--50596759	23	2.1	23	88	8	69	47	0	0	52	1.00
50596728--50596758	16	2.0	16	93	6	55	51	0	0	48	1.00
50610106--50610148	19	2.1	19	83	12	50	46	0	2	51	1.13
50616693--50616731	18	2.2	17	86	13	53	33	0	20	46	1.51
50616944--50617018	23	3.3	23	92	0	123	17	21	26	34	1.95
50632188--50632414	27	8.4	27	89	0	319	43	21	17	18	1.88
50633741--50633795	26	2.1	26	89	0	83	40	21	16	21	1.91
50633969--50634056	27	3.3	27	90	0	140	18	18	21	42	1.90
50642053--50642125	36	2.0	36	100	0	146	35	16	13	34	1.88
50643122--50643157	14	2.4	15	86	13	56	27	2	5	63	1.30
50643122--50643162	14	2.8	14	88	7	55	29	2	4	63	1.28
50654597--50654641	21	2.2	21	77	18	51	8	2	40	48	1.47
50658877--50658925	20	2.5	20	83	6	64	34	16	28	20	1.94
50658910--50658948	20	2.0	20	85	5	53	41	12	30	15	1.85
50661786--50661868	26	3.2	26	76	15	82	43	15	10	30	1.81
50661799--50661882	26	3.3	24	79	15	89	44	14	9	32	1.77
50663315--50663461	27	5.4	27	78	4	109	27	23	8	40	1.83
50663536--50663596	27	2.3	26	83	8	77	26	24	14	34	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50663676--50663776	50	2.0	50	90	0	157	25	24	15	33	1.95
50665216--50665284	20	3.5	20	89	0	111	8	20	24	46	1.79
50667551--50667598	24	2.0	24	100	0	96	29	25	4	41	1.74
50683724--50683784	25	2.4	25	81	10	72	39	3	0	57	1.15
50686612--50686653	21	2.0	21	86	4	59	33	7	11	47	1.68
50710164--50710223	23	2.6	23	86	2	84	46	26	16	10	1.78
50710164--50710251	24	3.7	23	81	1	95	44	25	18	12	1.84
50711454--50711551	22	4.5	22	80	0	97	42	22	23	11	1.85
50711520--50711581	22	2.8	21	82	9	61	41	19	25	12	1.87
50711481--50711572	44	2.1	44	81	4	105	42	19	26	11	1.86
50713691--50713769	33	2.4	32	85	4	104	35	18	10	35	1.85
50718006--50718051	20	2.4	18	89	10	74	17	2	15	65	1.37
50718173--50718214	12	3.3	13	87	9	52	64	0	0	35	0.94
50724287--50724321	16	2.3	15	90	5	52	28	0	71	0	0.86
50731780--50731930	70	2.2	71	82	2	180	17	19	24	38	1.93
50731915--50732355	137	3.2	137	79	4	377	19	19	23	37	1.94
50731916--50732431	69	7.5	68	72	10	276	20	18	23	37	1.94
50732303--50732455	69	2.2	69	77	2	155	22	17	23	35	1.95
50734782--50734951	45	3.8	45	81	9	197	37	25	13	23	1.91
50734782--50734957	90	2.0	88	86	4	246	36	25	13	23	1.92
50742909--50742933	6	4.2	6	100	0	50	68	0	32	0	0.90
50751075--50751340	137	1.9	137	81	6	324	31	24	19	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50759124--50759185	32	2.0	32	90	3	99	43	11	16	29	1.82
50770016--50770073	4	14.5	4	77	0	62	44	1	27	25	1.64
50772976--50773012	14	2.6	14	95	4	65	29	27	13	29	1.94
50780795--50781153	152	2.4	152	88	3	512	41	4	9	44	1.57
50781760--50781800	16	2.7	16	85	7	50	17	7	2	73	1.17
50782534--50782578	3	15.0	3	100	0	90	66	0	0	33	0.92
50799835--50799860	4	6.5	4	100	0	52	76	0	0	23	0.78
50800154--50800238	42	2.0	42	93	0	143	42	10	9	37	1.72
50801796--50801841	23	2.0	22	83	4	56	43	2	13	41	1.55
50811693--50811741	25	1.9	26	84	12	66	51	6	0	42	1.27
50811645--50811789	68	2.1	69	83	3	177	53	4	2	40	1.32
50817069--50817117	25	1.9	26	84	12	66	51	6	0	42	1.27
50817021--50817165	68	2.1	69	83	3	177	53	4	2	40	1.32
50830462--50830542	26	3.2	26	62	22	62	24	14	27	33	1.95
50830544--50830642	46	2.2	43	82	12	119	24	19	24	32	1.97
50830766--50830797	16	2.0	16	93	0	55	59	0	15	25	1.36
50855937--50856099	57	2.9	57	85	3	195	41	8	20	30	1.82
50865078--50865102	8	3.1	8	100	0	50	24	0	0	76	0.80
50869161--50869192	8	4.0	8	100	0	64	25	0	0	75	0.81
50869665--50869709	22	2.0	23	91	4	74	28	2	2	66	1.15
50877028--50877074	17	2.8	17	77	9	51	23	4	4	68	1.26
50877831--50877855	13	1.9	13	100	0	50	84	0	0	16	0.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50881819--50881903	43	2.0	43	88	0	125	35	10	15	38	1.82
50882980--50883034	19	2.8	19	80	17	60	67	0	7	25	1.16
50884646--50884671	9	2.9	9	100	0	52	19	23	0	57	1.40
50885338--50885393	13	4.5	13	78	13	55	50	16	0	33	1.45
50885989--50886024	8	4.8	8	86	13	58	11	0	0	88	0.50
50885988--50886024	14	2.6	14	91	4	56	13	0	0	86	0.57
50889567--50889609	18	2.4	18	84	0	59	16	11	41	30	1.83
50898835--50898884	26	1.9	26	100	0	100	42	16	18	24	1.89
50901480--50901511	16	2.0	16	93	0	55	43	6	21	28	1.77
50901696--50901851	58	2.7	59	84	7	185	54	2	0	42	1.18
50903408--50903511	41	2.5	41	87	0	136	27	22	20	29	1.98
50908974--50909024	21	2.4	21	96	0	93	31	0	9	58	1.30
50909014--50909105	47	2.0	47	95	0	166	45	5	6	42	1.53
50909167--50909202	17	2.1	18	89	5	56	63	13	2	19	1.41
50910764--50910800	19	1.9	19	89	10	58	70	18	8	2	1.25
50913101--50913273	43	4.0	42	74	15	165	24	17	26	31	1.97
50917107--50918083	484	2.0	484	93	0	1686	40	16	9	32	1.82
50918332--50918456	45	2.8	45	88	1	180	32	23	22	21	1.98
50918509--50918540	2	16.0	2	100	0	64	50	0	0	50	1.00
50921456--50921553	25	3.8	25	88	8	135	42	10	15	31	1.80
50921456--50921553	52	1.9	50	85	8	135	42	10	15	31	1.80
50921689--50921763	35	2.1	35	95	0	132	45	17	16	21	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50925757--50925800	18	2.4	18	81	7	54	70	2	13	13	1.26
50928831--50930151	440	3.0	440	96	0	2381	27	19	17	35	1.94
50930576--50930612	15	2.4	16	90	4	58	54	2	0	43	1.14
50938487--50938575	40	2.2	41	84	7	112	39	2	2	56	1.24
50941294--50941333	21	1.9	21	84	0	53	62	2	7	27	1.35
50941893--50941986	19	4.7	21	89	9	135	40	12	8	38	1.74
50941893--50941987	40	2.4	38	87	5	136	40	13	8	37	1.75
50945752--50945785	17	2.0	17	100	0	68	52	5	5	35	1.50
50945880--50945936	25	2.2	26	93	6	107	24	0	38	36	1.56
50950768--50950812	14	3.3	14	87	3	56	48	11	0	40	1.39

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210