genome.fa.s3.2.7.7.80.10.50.1000.199.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr8
Parameters: 2 7 7 80 10 50 1000
Length:  70076365

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   

This is table  199  of  210  ( 25174 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66381807--66381858	17	3.1	17	91	2	79	28	25	5	40	1.78
66384894--66384968	36	2.1	36	94	0	132	45	12	9	33	1.73
66385709--66385741	16	2.1	16	88	11	50	36	0	9	54	1.32
66385905--66385963	26	2.3	27	82	8	70	30	10	8	50	1.66
66386176--66386212	13	2.8	13	87	4	56	21	5	5	67	1.31
66389137--66389162	2	13.0	2	100	0	52	50	0	0	50	1.00
66406250--66406289	21	1.9	21	100	0	80	47	15	15	22	1.82
66420633--66420666	18	1.9	17	88	5	50	50	0	0	50	1.00
66420706--66420756	19	2.7	20	81	9	61	35	1	7	54	1.40
66420714--66420756	18	2.2	20	88	8	63	39	0	4	55	1.20
66421868--66421896	14	2.1	14	93	6	51	37	0	0	62	0.96
66421883--66421907	8	3.1	8	100	0	50	52	0	0	48	1.00
66427526--66428726	309	3.9	307	86	3	1561	35	14	18	31	1.92
66429251--66429485	80	3.0	78	85	3	310	28	24	11	35	1.91
66430555--66430989	217	2.0	218	99	0	863	32	8	6	52	1.58
66430961--66431012	12	4.2	12	75	15	52	36	1	0	61	1.07
66430961--66431019	19	3.2	18	79	15	59	37	1	0	61	1.07
66430968--66431018	27	2.0	25	92	7	84	35	1	0	62	1.06
66431332--66431501	84	2.0	84	90	0	268	45	19	14	21	1.85
66437181--66437962	308	2.5	306	85	3	1022	35	14	19	30	1.91
66446905--66446960	25	2.2	25	87	6	76	41	19	14	25	1.89
66448551--66448757	101	2.1	101	88	0	308	45	14	16	22	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66450447--66450476	3	10.0	3	100	0	60	66	0	33	0	0.92
66453844--66453953	56	2.0	56	96	0	202	40	9	8	41	1.66
66454667--66454721	23	2.4	24	85	14	80	60	0	7	32	1.24
66456072--66456119	15	3.4	14	77	13	53	33	4	20	41	1.72
66458765--66458937	41	4.2	41	84	0	220	34	17	21	26	1.96
66458966--66459163	42	4.7	43	79	12	232	21	17	26	33	1.96
66458925--66459163	84	2.8	83	91	1	352	22	17	26	33	1.96
66465665--66465833	42	4.0	42	100	0	338	40	14	21	24	1.90
66467821--66468027	101	2.1	101	89	0	317	45	15	16	22	1.84
66473985--66474028	15	3.1	15	81	18	67	31	0	25	43	1.55
66473983--66474049	27	2.5	27	85	0	80	35	0	20	43	1.53
66475783--66475842	24	2.6	24	79	10	63	30	0	1	68	0.99
66475790--66475842	19	2.8	19	75	11	56	28	0	1	69	0.99
66475782--66475843	23	2.7	22	73	11	54	30	0	1	67	1.00
66476764--66476866	51	2.0	51	100	0	206	37	3	23	34	1.73
66485005--66485046	22	1.9	22	90	0	66	40	14	28	16	1.88
66485005--66485081	20	3.7	19	75	6	55	44	15	27	12	1.83
66489775--66489823	21	2.3	21	75	6	55	6	16	4	73	1.19
66492348--66492394	24	2.0	23	84	12	60	51	4	14	29	1.62
66494567--66494630	19	3.0	22	75	24	66	37	4	3	54	1.37
66494584--66494649	19	3.4	19	73	19	64	37	4	1	56	1.29
66494571--66494648	39	1.9	42	89	7	126	37	3	2	56	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66494595--66494656	19	3.2	19	75	18	56	41	1	1	54	1.19
66496749--66496786	16	2.3	17	90	4	60	5	26	5	63	1.37
66504979--66505013	5	6.8	5	90	3	52	20	17	20	42	1.89
66508150--66508192	18	2.4	18	88	0	59	41	44	2	11	1.53
66508296--66508371	9	8.4	9	88	5	109	25	7	22	44	1.79
66508875--66509047	83	2.1	84	94	1	303	36	5	9	47	1.59
66510163--66510198	18	2.0	18	89	10	56	69	5	0	25	1.10
66510167--66510206	18	2.2	19	86	4	55	70	5	0	25	1.08
66510305--66510954	113	5.8	112	77	9	527	26	24	18	30	1.98
66510305--66510954	114	5.7	114	78	7	524	26	24	18	30	1.98
66510528--66510954	229	1.9	229	83	3	502	25	23	18	31	1.97
66511047--66511135	40	2.2	40	83	0	106	19	20	25	34	1.96
66512879--66512921	14	2.9	15	80	12	54	34	2	0	62	1.08
66514635--66514689	26	2.1	27	90	10	87	34	10	0	54	1.36
66514635--66514683	24	2.0	26	88	8	75	34	10	0	55	1.34
66514757--66514808	27	1.9	27	84	0	68	30	23	32	13	1.93
66514882--66514920	19	2.1	19	85	4	53	35	7	0	56	1.28
66514887--66514929	18	2.3	19	84	4	52	39	11	0	48	1.40
66516021--66516087	27	2.4	27	90	7	100	49	0	10	40	1.37
66521911--66521950	18	2.2	19	90	4	64	72	2	0	25	0.97
66528414--66528472	31	1.9	31	82	0	73	45	8	6	38	1.61
66536760--66536935	90	2.0	90	91	0	289	35	17	13	34	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66537083--66537118	10	3.6	10	88	11	56	0	58	0	41	0.98
66541165--66541580	49	8.6	48	78	9	226	32	18	25	23	1.97
66541165--66541619	48	9.4	49	80	9	404	32	18	25	23	1.97
66541260--66541605	93	3.5	102	79	10	280	34	19	24	21	1.96
66544550--66544629	26	3.0	26	66	10	72	55	1	11	32	1.43
66544658--66544688	16	1.9	16	100	0	62	70	0	9	19	1.14
66544990--66545025	13	2.7	14	87	12	58	63	0	5	30	1.17
66545290--66545325	13	2.7	14	87	12	58	63	0	5	30	1.17
66546977--66547056	26	3.0	26	66	10	72	55	1	11	32	1.43
66547085--66547115	16	1.9	16	100	0	62	70	0	9	19	1.14
66547417--66547452	13	2.7	14	87	12	58	63	0	5	30	1.17
66547818--66547880	33	1.9	33	83	0	81	23	46	14	15	1.83
66550974--66551227	49	5.1	48	82	6	280	20	23	19	36	1.95
66550974--66551227	98	2.6	98	84	7	320	20	23	19	36	1.95
66557812--66557882	31	2.2	33	78	14	76	32	1	5	60	1.29
66558903--66559049	60	2.5	59	80	4	170	27	21	15	34	1.94
66561736--66561781	23	2.0	23	87	8	67	32	8	19	39	1.82
66566416--66566453	20	1.9	20	88	0	58	50	13	7	28	1.69
66566402--66566468	34	1.9	35	87	3	100	47	13	7	31	1.70
66567882--66567925	12	3.5	12	76	11	52	68	0	0	31	0.90
66577518--66577635	43	2.7	42	84	6	146	32	7	18	41	1.79
66582091--66582129	19	2.1	19	90	0	60	33	7	7	51	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66599585--66599727	58	2.5	57	85	5	180	44	0	4	50	1.26
66599760--66600018	128	2.0	129	98	0	502	33	15	6	43	1.73
66600029--66600070	16	2.7	15	89	10	66	26	23	9	40	1.85
66611023--66611127	52	2.0	52	100	0	210	38	20	18	22	1.94
66611272--66611319	20	2.2	22	75	17	55	20	31	10	37	1.87
66611283--66611323	20	2.0	20	100	0	82	19	29	14	36	1.92
66618207--66618271	19	3.4	19	80	15	64	49	1	23	26	1.59
66621676--66621766	44	2.1	44	95	0	164	29	13	10	46	1.77
66622774--66622928	49	3.2	48	68	14	138	45	16	13	25	1.83
66622754--66623038	97	2.9	97	92	2	466	47	16	12	24	1.81
66623461--66623504	22	2.0	22	91	4	72	68	13	18	0	1.22
66624145--66624207	27	2.3	27	81	8	74	53	4	3	38	1.38
66626185--66626582	57	6.8	59	83	5	495	12	30	14	42	1.83
66626185--66626582	117	3.4	117	97	0	742	12	30	14	42	1.83
66633107--66633141	18	1.9	18	94	0	61	31	34	14	20	1.92
66633154--66633183	15	2.0	15	93	0	51	16	50	13	20	1.78
66633164--66633309	63	2.3	63	78	4	161	19	36	19	23	1.94
66636789--66636825	9	4.1	9	92	0	65	29	10	13	45	1.77
66639343--66639433	44	2.1	44	93	0	155	31	12	9	46	1.74
66640425--66640712	97	2.9	100	90	4	449	46	16	12	24	1.82
66641833--66641895	27	2.3	27	81	8	74	53	4	3	38	1.38
66645032--66645061	14	2.1	14	100	0	60	63	16	6	13	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66648766--66648838	13	5.7	13	75	18	55	47	4	1	46	1.30
66652164--66652204	22	1.9	21	95	5	73	43	14	12	29	1.82
66653645--66653681	9	4.1	9	92	0	65	29	10	13	45	1.77
66653735--66653765	9	3.4	9	90	0	53	38	22	12	25	1.90
66654356--66654390	18	1.9	18	88	0	52	17	0	2	80	0.84
66654398--66654447	22	2.3	23	79	10	59	20	16	6	58	1.59
66655347--66655380	17	2.0	17	88	0	50	35	0	2	61	1.11
66656031--66656070	11	3.5	11	86	6	62	37	0	10	52	1.35
66656022--66656070	23	2.1	23	100	0	98	38	0	12	48	1.41
66656022--66656070	12	4.3	11	84	7	62	38	0	12	48	1.41

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210