genome.fa.s3.2.7.7.80.10.50.1000.102.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr8
Parameters: 2 7 7 80 10 50 1000
Length:  70076365

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   

This is table  102  of  210  ( 25174 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34722766--34722866	43	2.3	43	83	3	123	20	12	24	41	1.88
34722987--34723030	23	1.9	23	90	0	70	40	20	11	27	1.86
34724294--34724340	23	2.0	23	91	0	76	42	4	10	42	1.59
34724396--34724434	19	2.1	19	85	9	53	71	0	17	10	1.12
34724668--34724695	12	2.3	12	100	0	56	35	0	28	35	1.58
34725246--34725275	15	2.0	15	93	0	51	36	0	13	50	1.42
34729701--34729778	30	2.6	30	83	0	84	33	21	16	28	1.95
34730944--34731016	28	2.6	28	95	0	128	54	6	2	35	1.41
34731425--34731487	31	2.0	31	93	0	108	49	9	6	34	1.61
34741932--34742050	49	2.4	49	77	5	123	26	21	16	36	1.94
34744862--34744888	11	2.5	11	100	0	54	66	18	7	7	1.40
34758307--34758332	2	13.0	2	100	0	52	50	0	0	50	1.00
34758405--34758431	2	13.5	2	100	0	54	48	0	0	51	1.00
34772153--34772204	27	1.9	27	85	14	72	34	1	40	23	1.66
34773652--34773683	16	2.0	16	93	0	55	65	0	6	28	1.16
34773971--34773999	3	9.7	3	100	0	58	68	0	0	31	0.89
34774082--34774130	23	2.1	22	82	14	55	53	16	4	26	1.61
34775472--34775837	182	2.0	182	96	0	669	22	20	25	30	1.98
34777561--34777716	57	2.7	57	89	5	235	48	10	12	28	1.75
34779270--34779309	21	1.9	21	85	10	55	62	2	0	35	1.09
34780686--34780722	18	2.1	18	94	0	65	59	0	13	27	1.35
34780954--34781004	16	3.1	16	72	16	50	41	3	0	54	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34781043--34781084	17	2.5	17	88	3	59	59	0	9	30	1.29
34782192--34782255	31	2.1	31	82	11	78	39	0	18	42	1.51
34783153--34783192	3	13.3	3	100	0	80	67	0	0	32	0.91
34785916--34785940	6	4.2	6	100	0	50	16	16	0	68	1.22
34787249--34787288	19	2.1	19	90	4	62	67	0	2	30	1.04
34787927--34787978	16	3.2	16	91	0	77	28	0	34	36	1.58
34787959--34788068	45	2.6	43	80	9	129	33	5	29	31	1.80
34788101--34790249	137	15.7	137	99	0	4255	46	13	14	25	1.82
34792243--34792284	21	2.0	21	95	0	75	23	40	0	35	1.55
34792428--34792473	18	2.6	18	82	3	58	45	32	0	21	1.52
34807357--34807444	45	2.0	45	88	0	131	26	20	18	35	1.95
34807955--34808124	88	1.9	88	80	1	198	29	24	16	30	1.96
34807983--34808172	88	2.2	88	79	1	202	30	22	20	27	1.98
34808071--34808526	132	3.5	131	88	1	615	27	24	19	29	1.98
34808885--34808942	24	2.4	24	82	0	62	31	22	10	36	1.88
34817516--34817573	24	2.4	24	82	5	73	36	20	31	12	1.89
34817536--34817589	24	2.2	24	83	0	63	35	25	25	12	1.92
34825312--34825379	25	2.8	25	77	2	75	35	20	26	17	1.95
34827213--34827258	18	2.5	17	80	13	56	36	21	2	39	1.66
34829467--34829517	20	2.5	20	93	3	84	21	54	0	23	1.44
34830309--34830347	16	2.4	17	91	4	62	56	2	2	38	1.27
34833853--34833916	29	2.3	26	73	19	67	48	6	4	40	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34838177--34838293	48	2.5	46	88	2	171	29	13	21	35	1.92
34840702--34840744	21	2.0	21	86	4	59	13	0	2	83	0.74
34840706--34840744	8	4.5	8	87	12	51	12	0	2	84	0.72
34851656--34851712	21	2.7	21	80	2	69	19	26	40	14	1.89
34852590--34852639	20	2.4	22	75	18	54	70	4	2	24	1.15
34858193--34858404	103	2.0	104	97	2	401	39	17	10	33	1.84
34862284--34862337	7	7.7	7	100	0	108	27	0	0	72	0.85
34864821--34864861	21	2.0	21	95	0	73	29	0	26	43	1.55
34864826--34864871	21	2.1	21	84	4	56	30	6	26	36	1.82
34869141--34869222	42	2.0	42	85	4	112	25	25	26	21	2.00
34871164--34871348	92	2.0	92	94	2	327	42	25	3	28	1.72
34874214--34874240	2	13.5	2	100	0	54	0	0	48	51	1.00
34876160--34876208	18	2.7	17	81	12	53	67	0	0	32	0.91
34877788--34877860	37	2.0	35	84	5	92	39	2	6	50	1.43
34878923--34879149	43	5.3	43	87	1	276	28	27	20	23	1.99
34878901--34879149	86	2.9	88	82	5	310	28	26	20	24	1.99
34878921--34879188	86	3.1	84	79	8	281	29	27	19	23	1.98
34880177--34880207	16	1.9	16	100	0	62	38	12	12	35	1.82
34881199--34881237	21	1.9	21	89	5	62	35	0	5	58	1.20
34883468--34883665	41	4.8	41	83	6	258	33	26	18	22	1.96
34883468--34883842	82	4.5	82	72	11	321	32	26	18	22	1.97
34883545--34883883	170	2.0	171	99	0	671	31	26	20	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34883715--34883836	41	3.0	42	85	6	169	34	27	17	21	1.95
34883871--34883966	39	2.4	40	83	10	117	17	20	21	39	1.92
34883891--34883965	40	1.9	37	89	7	114	21	22	21	34	1.97
34890466--34890503	19	2.0	19	100	0	76	31	21	10	36	1.87
34897281--34897317	19	1.9	19	88	0	56	24	2	5	67	1.25
34897412--34897468	22	2.6	22	88	0	78	8	3	42	45	1.52
34897905--34897987	31	2.6	31	72	14	80	49	12	13	25	1.76
34898866--34898891	13	2.0	13	100	0	52	23	7	7	61	1.49
34899955--34899991	19	1.9	19	88	0	56	24	2	5	67	1.25
34900086--34900142	22	2.6	22	88	0	78	8	3	42	45	1.52
34900579--34900661	31	2.6	31	72	14	80	49	12	13	25	1.76
34901197--34901473	134	2.1	135	97	2	522	45	5	6	42	1.54
34902342--34902469	66	2.0	65	90	4	206	41	5	3	50	1.41
34903058--34903088	3	10.3	3	100	0	62	67	0	0	32	0.91
34903323--34903377	24	2.3	25	81	6	60	63	0	1	34	1.05
34903853--34903891	15	2.8	14	85	11	53	30	0	0	69	0.89
34903856--34903886	16	2.0	16	93	6	55	25	0	0	74	0.82
34911139--34911207	3	23.0	3	90	0	93	63	4	2	28	1.28
34911531--34911577	23	2.0	24	87	4	69	38	17	6	38	1.75
34911569--34911594	12	2.2	12	100	0	52	42	15	7	34	1.75
34911708--34911738	14	2.2	14	94	0	53	12	0	9	77	0.99
34911853--34911905	3	17.7	3	100	0	106	32	0	0	67	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34931848--34931935	23	3.7	23	74	17	56	34	3	5	56	1.39
34933042--34933086	23	2.0	23	86	8	65	4	11	6	77	1.09
34933888--34933933	18	2.5	19	76	13	51	23	0	2	73	0.94
34934892--34935061	88	1.9	88	86	0	241	28	17	27	27	1.97
34935082--34935185	50	2.1	50	80	3	111	25	24	25	25	2.00
34935255--34935394	50	2.8	50	74	2	129	27	20	25	26	1.99
34935263--34935771	100	5.1	100	84	4	591	30	20	23	25	1.99
34935363--34935622	50	5.2	49	66	4	153	32	21	22	23	1.98
34935460--34935721	50	5.2	50	68	6	172	31	20	23	23	1.98
34935777--34936017	129	1.9	127	85	1	338	28	19	21	30	1.97
34936784--34936827	21	2.1	21	87	8	63	4	11	6	77	1.11
34937407--34937440	15	2.3	15	90	5	52	35	5	2	55	1.39
34937407--34937449	14	3.1	14	83	9	52	32	4	2	60	1.30
34938141--34938572	189	2.3	189	99	0	855	32	16	16	34	1.91
34945058--34945330	136	2.0	137	99	0	539	38	5	5	50	1.49
34953450--34953483	12	2.8	12	86	0	50	64	0	11	23	1.26
34955327--34955397	33	2.3	30	86	13	92	23	5	11	59	1.53
34955429--34955471	17	2.5	17	76	3	50	62	0	0	37	0.95
34961187--34961826	44	14.7	44	70	10	279	27	25	19	27	1.99
34961187--34961828	217	2.9	218	92	0	1052	27	25	19	28	1.99
34962347--34962445	49	2.0	49	98	0	189	30	20	13	36	1.90
34962413--34962897	128	3.8	127	91	1	727	23	23	18	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34964201--34964237	13	2.7	14	91	4	58	10	13	0	75	1.04
34964201--34964244	14	3.2	14	84	12	56	11	11	0	77	1.00
34964201--34964237	7	5.4	7	90	6	58	10	13	0	75	1.04
34965096--34965167	6	11.7	6	83	5	90	12	4	13	69	1.33
34969922--34969981	30	2.0	30	84	12	79	65	0	1	33	1.03
34969934--34969981	14	3.1	16	79	14	64	64	0	2	33	1.05
34970160--34970222	25	2.5	25	79	7	65	63	1	3	31	1.19
34976899--34976948	20	2.5	19	84	9	64	70	6	2	22	1.20
34981503--34981548	3	15.3	3	100	0	92	67	0	0	32	0.91
34981692--34981787	40	2.4	40	84	3	122	39	19	22	17	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210