genome.fa.s3.2.7.7.80.10.50.1000.174.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr8
Parameters: 2 7 7 80 10 50 1000
Length:  70076365

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   

This is table  174  of  210  ( 25174 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57822789--57823147	87	4.1	87	82	3	409	32	11	28	26	1.92
57842619--57842654	16	2.3	15	90	4	54	25	16	0	58	1.38
57846294--57846392	50	2.0	50	92	4	164	19	17	17	46	1.84
57855616--57855652	20	1.9	18	89	10	56	37	2	5	54	1.38
57857269--57857307	20	2.0	20	89	0	60	20	23	2	53	1.57
57870851--57870884	16	2.2	15	89	5	50	44	0	0	55	0.99
57873878--57873915	16	2.5	15	87	8	51	28	2	5	63	1.30
57874513--57874562	26	1.9	26	91	0	82	28	28	24	20	1.99
57880483--57880520	16	2.5	15	87	8	51	28	2	5	63	1.30
57881116--57881166	26	2.0	26	88	0	75	25	29	25	19	1.99
57890775--57890841	34	1.9	35	90	3	109	29	10	13	46	1.76
57902441--57902544	50	2.1	50	100	0	208	29	23	15	31	1.95
57904134--57904314	90	2.0	90	100	0	362	23	16	18	41	1.90
57908197--57908256	28	2.1	28	96	0	111	45	5	6	43	1.52
57909442--57909554	50	2.3	51	81	4	140	21	28	22	28	1.99
57911774--57911907	72	1.9	72	85	3	189	25	23	17	33	1.96
57922542--57922580	15	2.6	15	83	0	51	28	43	15	12	1.83
57924931--57924959	15	1.9	15	100	0	58	34	13	13	37	1.85
57930359--57930419	30	2.1	29	84	9	79	50	9	6	32	1.61
57930359--57930416	29	2.0	29	83	6	73	50	10	6	32	1.63
57935027--57935075	23	2.0	24	81	14	57	38	14	4	42	1.64
57936501--57936527	14	1.9	14	100	0	54	14	25	22	37	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57938888--57938945	29	2.0	29	96	0	107	24	22	31	22	1.99
57942544--57942592	20	2.7	18	77	22	57	51	2	2	44	1.24
57942606--57942647	19	2.3	18	84	8	50	54	0	0	45	0.99
57944611--57944853	50	4.7	51	82	5	258	26	20	29	24	1.99
57956254--57956318	16	3.9	16	76	15	53	38	1	3	56	1.24
57957090--57957129	21	2.0	21	85	5	55	40	7	47	5	1.54
57963736--57963836	27	3.6	27	85	4	139	28	23	10	36	1.89
57967691--57967729	19	2.2	17	86	9	51	46	2	7	43	1.46
57969979--57970119	6	22.5	6	74	8	102	72	2	18	7	1.18
57970107--57970141	18	1.9	18	88	11	54	57	0	20	22	1.41
57991590--57991714	54	2.3	54	86	4	180	32	10	16	41	1.82
57993510--57993563	27	2.0	28	82	10	67	51	11	0	37	1.37
58002939--58002997	27	2.2	27	90	0	91	40	13	18	27	1.88
58007350--58007409	10	5.9	10	75	9	50	30	15	28	26	1.96
58007353--58007409	20	2.8	20	81	7	62	28	15	29	26	1.96
58007850--58007894	20	2.2	20	84	8	54	11	6	11	71	1.31
58014839--58015012	50	3.5	50	87	0	231	20	28	21	28	1.98
58019081--58019165	25	3.4	25	90	0	134	31	20	28	20	1.97
58031991--58032037	22	2.1	22	84	4	58	34	0	21	44	1.52
58032018--58032067	20	2.4	21	80	12	59	46	0	18	36	1.49
58036997--58037035	17	2.3	17	86	0	51	25	20	23	30	1.98
58049432--58049536	52	2.0	53	83	1	131	33	19	14	33	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58051374--58051427	20	2.7	20	94	0	90	22	20	3	53	1.61
58052265--58052387	46	2.7	46	83	1	149	17	21	15	45	1.85
58052368--58052570	89	2.3	90	78	7	209	23	21	16	38	1.92
58052375--58052569	45	4.4	45	75	5	171	23	21	17	38	1.93
58054848--58054975	54	2.4	54	90	2	204	21	23	25	29	1.99
58055876--58055911	6	6.0	6	100	0	72	33	33	0	33	1.58
58061317--58061423	20	5.3	20	79	5	117	39	20	28	11	1.87
58076218--58076246	13	2.1	14	93	6	51	27	0	13	58	1.36
58080893--58080921	13	2.1	14	93	6	51	27	0	13	58	1.36
58083780--58083808	13	2.1	14	93	6	51	27	0	13	58	1.36
58091456--58091718	45	5.9	45	94	0	438	38	15	19	26	1.92
58093067--58093121	23	2.5	22	76	5	56	47	9	1	41	1.46
58093048--58093349	93	3.2	93	72	9	270	46	12	1	39	1.51
58093054--58093437	186	2.0	190	91	4	618	46	13	1	39	1.51
58093186--58093945	92	8.2	92	83	1	867	45	17	1	35	1.58
58095010--58095038	6	4.8	6	100	0	58	34	0	65	0	0.93
58095041--58095081	4	10.2	4	100	0	82	0	24	24	51	1.49
58095083--58095112	2	15.0	2	92	0	51	0	3	50	46	1.18
58099340--58099381	22	2.0	21	86	13	59	21	0	0	78	0.75
58099386--58099586	109	1.9	108	89	3	314	31	23	13	30	1.94
58100374--58100413	12	3.5	12	80	13	57	72	5	0	22	1.04
58100369--58100422	22	2.4	23	96	3	101	75	3	0	20	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58104403--58104436	10	3.4	10	100	0	68	29	8	11	50	1.69
58105093--58105123	15	2.1	15	93	0	53	38	6	22	32	1.80
58105558--58105727	85	2.0	85	96	0	313	35	11	8	43	1.73
58106685--58106741	19	2.7	20	82	15	62	50	0	3	45	1.18
58112451--58112488	19	2.0	19	89	0	58	34	0	5	60	1.19
58113970--58114050	32	2.5	31	78	11	92	13	44	11	30	1.79
58113991--58114063	32	2.2	32	83	7	85	16	49	8	26	1.73
58113970--58114142	64	2.7	64	75	7	161	14	44	10	30	1.79
58114121--58114182	33	1.9	33	87	9	92	16	43	3	37	1.64
58128999--58129091	25	3.8	25	76	7	82	26	22	18	32	1.97
58129035--58129101	25	2.7	25	79	9	73	29	23	19	26	1.98
58129880--58129958	25	3.2	25	78	7	70	27	22	18	30	1.98
58129896--58129961	25	2.6	25	81	9	80	30	22	19	27	1.98
58130749--58130815	25	2.7	25	81	9	82	28	23	20	26	1.99
58128695--58131255	858	3.0	858	96	1	4681	32	12	19	35	1.89
58133876--58133973	27	3.6	27	90	5	144	23	24	18	33	1.97
58133846--58133974	54	2.4	54	86	0	168	23	25	17	34	1.96
58133896--58134001	27	3.9	27	87	4	142	24	23	16	34	1.95
58133882--58134000	54	2.2	54	87	0	166	24	23	16	35	1.95
58136934--58137013	42	1.9	42	87	5	117	25	28	22	23	1.99
58137807--58137854	22	2.2	22	85	7	62	29	20	6	43	1.76
58145356--58145380	8	3.1	8	100	0	50	24	0	0	76	0.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58147375--58147758	50	7.7	50	85	1	468	27	21	29	21	1.99
58162035--58162090	26	2.2	26	83	0	67	33	26	14	25	1.94
58162052--58162141	26	3.6	24	71	13	65	35	25	14	24	1.93
58162120--58162176	27	2.1	28	86	3	80	43	22	12	21	1.85
58162052--58162195	78	1.9	77	84	10	195	37	23	13	25	1.92
58167788--58167828	6	6.7	6	97	2	73	70	14	0	14	1.16
58170837--58170883	21	2.3	21	85	3	60	48	17	0	34	1.47
58172597--58172658	24	2.6	23	80	12	72	20	16	25	37	1.93
58190299--58190429	29	4.4	29	71	16	88	35	17	22	24	1.95
58190299--58190493	90	2.2	90	85	3	268	35	16	23	25	1.95
58190389--58190530	61	2.3	60	84	5	187	33	16	23	25	1.96
58190396--58190530	60	2.2	61	88	1	191	32	17	23	25	1.97
58193611--58194307	347	2.0	347	99	0	1376	31	24	20	23	1.98
58203631--58203660	12	2.5	12	94	0	51	6	30	40	23	1.80
58209104--58209246	50	2.7	53	79	6	148	26	21	27	24	1.99
58219998--58220195	50	3.9	50	81	7	211	27	20	28	23	1.99
58220460--58220498	20	2.0	20	89	0	60	53	2	25	17	1.56
58229975--58230017	3	14.0	3	90	4	68	32	2	0	65	1.06
58232125--58232167	19	2.3	18	84	15	52	20	23	13	41	1.88
58234203--58234271	1	69.0	1	76	0	57	86	7	0	5	0.69
58234289--58234322	6	5.3	6	86	13	50	79	0	20	0	0.73
58234291--58234321	14	2.3	13	94	5	53	83	0	16	0	0.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58236371--58237578	88	13.7	88	95	0	1979	25	24	24	25	2.00
58237611--58237819	88	2.4	88	90	0	328	32	18	22	26	1.97
58237699--58238166	132	3.6	132	87	2	622	32	17	22	26	1.96
58237699--58238176	261	1.8	262	84	4	597	33	17	22	26	1.96
58239434--58239691	132	2.0	132	95	0	462	29	18	24	26	1.98
58239797--58239891	44	2.2	45	80	5	122	29	17	26	26	1.98
58239759--58240027	129	2.1	129	81	4	317	30	18	22	28	1.97
58243815--58243927	58	1.9	58	96	0	208	17	14	21	46	1.83
58245756--58245854	43	2.3	42	84	1	117	31	27	16	25	1.96
58252196--58252239	20	2.3	19	80	7	52	63	4	6	25	1.38

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210