genome.fa.s3.2.7.7.80.10.50.1000.30.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr8
Parameters: 2 7 7 80 10 50 1000
Length:  70076365

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   

This is table  30  of  210  ( 25174 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10687946--10688071	62	2.0	62	90	0	198	45	11	11	31	1.76
10701125--10701181	22	2.6	21	81	15	62	24	29	3	42	1.71
10702141--10702165	7	3.6	7	100	0	50	28	0	12	60	1.32
10702815--10702854	18	2.2	18	86	0	53	17	30	5	47	1.69
10703395--10703964	22	26.2	22	83	9	656	42	30	0	26	1.61
10703402--10703450	15	3.5	15	69	25	52	42	34	0	22	1.54
10703395--10703964	43	13.1	44	82	9	656	42	30	0	26	1.61
10703860--10703912	15	3.6	15	92	7	83	41	32	0	26	1.56
10703873--10703912	8	5.2	8	88	11	66	42	32	0	25	1.55
10703860--10703934	15	5.1	14	84	10	80	41	32	0	26	1.56
10707385--10707955	127	4.5	127	90	2	859	29	23	16	30	1.97
10711919--10711967	19	2.6	18	78	9	53	51	2	2	44	1.24
10711954--10712026	30	2.5	28	82	10	85	56	5	0	38	1.23
10714522--10714637	21	5.6	21	73	19	82	61	2	6	30	1.34
10714526--10714617	3	29.7	3	81	10	105	64	1	4	30	1.20
10720137--10720197	26	2.4	26	88	2	88	21	16	24	37	1.93
10720137--10720224	25	3.5	24	83	7	104	21	15	26	36	1.94
10720181--10720250	25	2.8	25	84	2	77	22	18	24	34	1.96
10720934--10720979	21	2.2	21	84	0	56	10	34	28	26	1.90
10722912--10722948	19	1.9	19	88	0	56	29	8	2	59	1.40
10727252--10727290	11	3.5	11	83	16	53	69	0	2	28	1.02
10728230--10728291	26	2.5	26	80	12	76	45	1	1	51	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10728267--10728307	18	2.3	19	88	12	61	43	0	2	53	1.13
10728215--10728322	44	2.4	45	80	3	130	42	0	4	51	1.28
10731047--10731154	54	2.0	54	87	0	153	26	20	20	32	1.97
10732480--10732534	27	2.0	27	82	6	67	69	9	0	21	1.16
10733474--10733545	5	15.2	5	80	11	89	37	0	1	61	1.05
10747545--10747591	21	2.2	21	85	7	60	25	25	8	40	1.84
10752741--10752774	17	2.1	16	88	5	50	0	29	0	70	0.87
10758177--10758288	54	2.1	52	82	11	131	45	3	1	49	1.30
10764569--10765976	714	2.0	712	86	1	1998	29	21	17	31	1.96
10767958--10768346	124	3.1	125	88	4	554	28	16	16	38	1.91
10768452--10768534	34	2.4	34	82	4	96	40	16	0	42	1.49
10768499--10768573	29	2.7	29	83	4	82	37	14	1	46	1.53
10775200--10775243	18	2.4	18	92	0	70	40	45	2	11	1.53
10775388--10775472	9	9.4	9	88	0	107	25	8	22	43	1.81
10775388--10775464	27	2.9	27	90	0	118	24	9	23	42	1.83
10789193--10789240	25	1.9	25	91	0	78	35	25	18	20	1.95
10792504--10792674	85	2.0	86	96	1	317	43	12	7	36	1.70
10795038--10795083	20	2.3	20	79	17	60	13	23	6	56	1.60
10795289--10795530	50	4.7	50	79	4	209	23	28	21	26	1.99
10795637--10795681	22	2.1	21	83	4	54	53	11	4	31	1.56
10799401--10799436	13	2.8	13	95	0	63	33	0	16	50	1.46
10799597--10799664	32	2.1	32	86	10	95	41	0	11	47	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10811046--10811092	24	2.0	24	100	0	94	55	4	12	27	1.56
10814512--10814651	72	1.9	72	100	0	280	50	7	5	37	1.54
10815321--10816329	503	2.0	503	91	0	1653	40	21	11	26	1.88
10819750--10819776	2	13.5	2	100	0	54	0	48	0	51	1.00
10829451--10829557	55	1.9	55	90	0	169	39	14	21	25	1.90
10832805--10832877	37	1.9	37	84	13	96	32	23	1	42	1.63
10832865--10832908	23	1.9	22	82	17	54	36	25	0	38	1.56
10833003--10833143	51	2.8	51	81	4	176	32	30	15	21	1.94
10839862--10839929	20	3.4	21	78	8	70	16	36	14	32	1.89
10839848--10839930	40	2.1	40	86	4	114	15	34	15	33	1.90
10839855--10839953	40	2.5	40	83	6	112	18	35	13	33	1.89
10846226--10846421	27	7.3	26	80	4	187	15	19	21	42	1.88
10846230--10846421	53	3.6	52	81	6	206	15	19	22	42	1.88
10846226--10846421	80	2.5	80	83	1	232	15	19	21	42	1.88
10855084--10855118	18	1.9	18	88	0	52	25	14	11	48	1.77
10857396--10857457	26	2.5	23	76	16	70	35	3	38	22	1.71
10857797--10858267	265	1.8	257	88	3	717	34	19	20	25	1.96
10864833--10865272	227	1.9	228	90	2	706	38	14	17	29	1.90
10866119--10866159	18	2.3	18	80	20	50	9	2	14	73	1.19
10866571--10867073	252	2.0	252	96	0	918	37	15	15	31	1.89
10870757--10870787	9	3.3	9	91	8	53	0	22	0	77	0.77
10870758--10870787	14	2.1	15	93	6	53	0	20	0	80	0.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10870758--10870787	5	6.2	5	92	7	53	0	20	0	80	0.72
10879773--10880008	50	4.6	50	76	7	192	23	27	20	27	1.99
10889888--10889975	22	3.9	22	78	11	88	39	19	23	17	1.92
10889888--10890059	25	7.4	25	75	10	125	39	18	23	19	1.92
10889889--10889975	47	1.9	44	83	6	111	39	19	24	17	1.92
10889944--10890059	44	2.5	44	81	8	124	37	17	22	22	1.93
10889970--10890006	19	1.9	19	94	0	65	35	10	29	24	1.89
10902561--10902593	16	2.0	17	88	5	50	18	3	6	72	1.18
10903202--10903230	12	2.3	13	94	5	51	72	13	6	6	1.26
10908095--10908153	30	2.0	30	86	6	84	40	0	38	20	1.53
10909791--10909821	16	1.9	16	100	0	62	19	0	9	70	1.14
10916688--10916731	21	2.1	21	95	0	79	11	22	15	50	1.76
10916696--10916754	21	2.8	21	82	5	66	13	23	18	44	1.86
10916726--10916802	21	3.7	21	89	0	109	19	20	16	42	1.89
10916686--10916815	42	3.1	43	78	12	137	15	22	15	46	1.83
10921163--10921206	23	1.9	23	90	0	70	27	11	2	59	1.44
10921868--10921926	26	2.1	31	84	15	83	62	5	1	30	1.26
10926901--10926925	10	2.5	10	100	0	50	64	0	8	28	1.22
10928403--10929478	298	3.6	298	94	1	1791	32	19	19	28	1.96
10932903--10932942	16	2.5	16	91	0	71	35	5	32	27	1.79
10934410--10934513	49	2.1	49	90	0	163	49	10	8	31	1.68
10936635--10936705	27	2.5	28	77	20	69	45	2	5	46	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10949449--10949592	48	3.0	48	97	0	270	30	28	12	28	1.93
10955239--10955318	31	2.6	31	90	2	117	20	10	21	48	1.78
10970442--10970473	2	16.0	2	100	0	64	0	50	0	50	1.00
10984370--10984527	70	2.3	69	78	1	172	34	17	10	37	1.84
10984127--10984437	140	2.2	140	82	3	367	35	19	9	35	1.85
10984334--10984673	69	4.9	69	72	3	227	32	17	11	39	1.84
10991909--10991963	25	2.2	25	81	12	60	18	21	25	34	1.96
10991918--10991979	25	2.5	24	77	15	63	20	19	22	37	1.95
10994017--10994683	44	15.0	45	68	13	324	28	23	24	23	1.99
10994017--10994882	89	9.8	88	82	4	827	28	23	23	24	2.00
10995676--10995700	7	3.6	7	100	0	50	48	12	16	24	1.79
10996447--10996494	3	16.0	3	84	0	60	31	4	4	60	1.35
10996447--10996494	15	3.2	15	90	0	69	31	4	4	60	1.35
10996449--10996503	18	3.1	18	84	5	67	30	3	5	60	1.37
11001864--11001946	43	2.0	42	80	7	96	49	16	20	13	1.79
11003286--11005306	89	22.7	88	82	4	2013	28	25	22	23	1.99
11004918--11005160	44	5.5	42	67	13	130	28	26	23	20	1.99
11006868--11006929	21	2.8	21	71	17	54	32	11	0	56	1.35
11017034--11017734	81	8.7	81	86	1	796	42	17	28	11	1.84
11017232--11017457	36	5.8	36	70	19	157	44	16	27	11	1.82
11017470--11017694	36	5.8	36	69	17	117	43	16	27	13	1.85
11020253--11020289	13	2.8	13	83	0	56	24	45	21	8	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11021386--11021465	39	2.1	39	100	0	160	28	15	7	48	1.71
11025956--11025990	15	2.4	15	95	4	63	40	5	17	37	1.73
11026741--11026798	30	1.9	30	89	0	89	41	3	24	31	1.71
11027010--11027041	13	2.5	13	94	0	55	31	0	12	56	1.37
11040075--11040141	29	2.3	29	92	0	107	19	25	35	19	1.95
11043515--11043546	16	2.0	16	100	0	64	12	12	12	62	1.55
11047941--11048043	41	2.5	40	89	4	154	51	5	22	20	1.68
11048009--11048054	24	1.9	24	90	0	74	56	6	23	13	1.60
11054763--11054923	46	3.6	45	94	3	272	32	15	23	28	1.95
11055501--11055646	73	2.0	73	100	0	292	28	16	24	30	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210