genome.fa.s3.2.7.7.80.10.50.1000.147.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr8
Parameters: 2 7 7 80 10 50 1000
Length:  70076365

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   

This is table  147  of  210  ( 25174 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48894744--48894784	19	2.2	19	86	0	55	14	46	0	39	1.45
48898172--48898217	23	2.0	23	87	8	67	65	0	2	32	1.05
48899029--48899077	24	2.0	24	100	0	98	36	8	26	28	1.85
48916045--48916078	5	6.8	5	93	0	59	35	0	2	61	1.11
48927085--48927139	27	2.0	28	96	3	103	43	10	12	32	1.78
48932619--48932812	29	6.7	28	76	7	138	22	27	13	36	1.92
48932605--48932782	58	3.1	58	77	5	153	22	27	14	35	1.93
48932619--48932812	87	2.2	88	86	2	275	22	27	13	36	1.92
48933554--48933591	20	1.9	20	94	0	67	23	7	0	68	1.16
48935414--48935439	12	2.2	12	100	0	52	23	7	15	53	1.67
48945009--48945047	19	2.1	19	90	0	60	41	20	0	38	1.53
48949048--48949112	30	2.2	30	97	0	121	67	0	0	32	0.91
48954089--48954150	26	2.4	26	83	5	72	43	9	12	33	1.76
48958902--48958992	39	2.3	39	86	3	121	45	21	4	28	1.71
48960983--48961022	20	2.1	18	86	9	53	60	2	0	37	1.11
48961621--48961661	17	2.5	17	80	7	50	65	2	0	31	1.05
48961623--48961670	15	3.1	14	78	18	51	68	2	0	29	1.01
48979011--48979233	68	3.3	64	75	14	193	36	17	19	26	1.93
48984670--48984737	26	2.6	26	92	0	109	22	30	23	23	1.99
48986571--48986612	20	2.1	21	87	12	63	16	16	4	61	1.50
48995561--48995671	51	2.2	51	100	0	222	38	18	16	26	1.92
49005446--49005481	13	2.9	12	92	8	63	77	0	8	13	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49006044--49006075	14	2.3	14	100	0	64	12	31	12	43	1.80
49006968--49007019	23	2.2	23	86	3	68	44	25	21	9	1.82
49008231--49008368	29	4.8	28	88	5	170	37	22	13	26	1.91
49008201--49008400	58	3.5	57	81	7	190	36	22	13	28	1.91
49008231--49008397	29	5.8	29	83	4	167	37	22	12	27	1.90
49008231--49008397	87	1.9	87	80	9	198	37	22	12	27	1.90
49009720--49009768	13	3.8	13	91	0	71	32	22	12	32	1.91
49017092--49017131	19	2.1	19	100	0	80	32	5	5	57	1.42
49018393--49018449	25	2.2	26	81	12	73	29	14	10	45	1.78
49020582--49020811	79	2.9	79	97	0	424	44	9	16	29	1.79
49023472--49023548	27	2.9	27	84	3	93	24	20	12	41	1.88
49023502--49023566	27	2.4	27	84	0	76	23	21	13	41	1.89
49023672--49023789	27	4.4	27	78	9	116	28	26	12	32	1.93
49023690--49023783	26	3.6	26	80	7	91	29	25	12	31	1.93
49025672--49025708	19	1.9	19	88	0	56	0	27	0	72	0.84
49025673--49025704	11	2.8	12	86	13	50	0	25	0	75	0.81
49028709--49028768	26	2.3	27	82	2	68	25	13	13	48	1.78
49028906--49029099	26	7.3	27	79	6	186	30	26	11	30	1.92
49028906--49029098	53	3.7	52	80	9	196	30	26	11	31	1.92
49029207--49029307	50	2.0	50	84	0	130	25	20	16	36	1.94
49033976--49034135	40	4.0	40	82	1	178	29	20	21	28	1.98
49033966--49034131	80	2.1	80	82	2	208	32	20	19	27	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49034171--49034374	103	2.0	99	84	3	264	32	21	20	25	1.97
49034375--49034462	7	12.4	7	74	2	59	19	0	34	46	1.50
49034659--49034723	7	9.1	7	80	9	78	13	0	44	41	1.44
49034647--49034693	22	2.1	22	84	7	60	17	0	34	48	1.47
49034647--49034706	29	2.1	29	87	0	84	16	0	38	45	1.48
49034655--49034723	29	2.4	29	83	7	88	14	0	42	43	1.45
49035312--49035367	11	5.2	11	78	2	60	25	28	3	42	1.71
49035343--49035440	51	1.9	51	87	4	144	27	23	3	45	1.67
49036583--49036615	7	4.7	7	92	0	57	30	0	12	57	1.35
49037507--49038359	114	7.5	113	88	2	1129	26	21	24	26	1.99
49037507--49038359	227	3.8	226	88	1	1152	26	21	24	26	1.99
49037514--49038359	341	2.5	341	88	0	1237	27	21	24	26	1.99
49040245--49040270	5	5.2	5	100	0	52	80	0	0	19	0.71
49043095--49043780	22	32.0	20	79	10	636	42	30	1	25	1.64
49043095--49043780	43	16.0	42	80	8	721	42	30	1	25	1.64
49045338--49045385	24	2.0	24	88	12	71	43	6	8	41	1.60
49048746--49048802	24	2.4	24	84	0	78	24	7	26	42	1.80
49049087--49049332	134	1.8	134	97	0	465	38	14	16	30	1.88
49050798--49050836	18	2.1	18	85	4	51	74	2	7	15	1.15
49051369--49051408	18	2.2	18	86	0	53	15	45	5	35	1.68
49052040--49052074	15	2.2	16	90	5	54	60	0	0	40	0.97
49052586--49052637	20	2.8	18	78	21	63	51	3	1	42	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49052552--49052697	68	2.1	69	83	3	188	52	4	3	39	1.37
49058918--49059132	70	3.1	70	64	20	189	37	9	6	46	1.63
49058851--49059062	67	3.1	67	63	20	168	39	8	8	43	1.66
49058838--49059361	137	3.8	137	92	2	786	39	8	6	44	1.62
49062309--49062366	9	6.4	9	73	0	53	39	27	10	22	1.86
49062429--49062517	39	2.3	39	84	2	124	19	2	28	50	1.59
49062496--49062525	13	2.3	13	100	0	60	16	0	43	40	1.48
49065313--49065343	12	2.6	12	100	0	62	6	25	16	51	1.68
49074445--49074531	45	1.9	45	90	0	138	26	16	24	33	1.95
49079086--49079122	18	2.1	18	90	10	58	54	5	21	18	1.64
49083416--49083488	25	3.0	24	82	13	103	20	23	23	32	1.98
49083414--49083528	25	4.6	25	76	12	101	22	22	24	30	1.99
49083416--49083528	50	2.3	50	85	3	147	22	23	24	30	1.99
49085467--49085513	19	2.4	20	96	3	87	74	4	4	17	1.14
49090009--49090298	161	1.8	161	97	0	553	38	13	16	31	1.88
49092457--49092502	3	15.0	3	90	4	74	36	0	0	63	0.95
49096223--49096263	16	2.7	15	85	10	57	41	7	0	51	1.30
49097771--49097808	15	2.6	15	83	4	51	18	2	34	44	1.64
49102913--49102944	14	2.3	14	94	0	55	21	18	34	25	1.96
49110133--49110205	29	2.5	30	86	2	112	46	13	26	13	1.80
49110057--49110293	60	4.0	61	74	6	223	42	15	22	19	1.89
49110057--49110321	90	2.9	88	73	11	234	41	15	23	20	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49110064--49110318	30	8.5	30	73	10	123	41	15	22	20	1.89
49112042--49112321	137	2.0	138	84	3	359	33	26	19	21	1.97
49113764--49114149	137	2.8	136	84	4	461	21	19	27	31	1.98
49117757--49117924	42	4.0	42	100	0	336	30	14	11	42	1.81
49119619--49119661	22	2.0	22	95	0	77	67	4	9	18	1.36
49120519--49120917	138	2.9	137	87	2	532	23	21	24	31	1.98
49129610--49129637	5	5.6	5	100	0	56	60	21	0	17	1.36
49131878--49131909	11	2.8	11	95	4	55	71	0	9	18	1.12
49147721--49147746	7	3.7	7	100	0	52	30	26	0	42	1.56
49175585--49175609	13	1.9	13	100	0	50	56	12	8	24	1.62
49175650--49175722	37	2.0	37	91	5	121	36	8	15	39	1.77
49188084--49188186	48	2.1	48	92	0	170	22	27	24	26	2.00
49188084--49188205	48	2.5	48	85	5	158	23	27	22	25	2.00
49189707--49189761	28	2.0	28	85	0	74	25	21	21	30	1.98
49190299--49190328	14	2.2	14	94	5	53	40	6	0	53	1.27
49190788--49190827	19	2.1	19	85	0	53	15	47	0	37	1.45
49190776--49190821	15	3.0	16	79	17	53	17	45	0	36	1.49
49192807--49192845	20	2.0	20	85	10	53	74	5	10	10	1.21
49194417--49194717	27	11.1	27	74	11	208	31	14	24	29	1.95
49194417--49194677	81	3.2	81	80	4	269	29	14	25	29	1.95
49196436--49196468	16	2.0	17	88	5	50	42	6	18	33	1.75
49205920--49206047	26	4.8	27	80	7	127	23	18	25	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49205894--49206047	81	1.9	81	84	0	209	23	18	24	33	1.97
49218531--49218642	51	2.2	51	84	4	138	34	20	19	25	1.96
49220698--49221117	138	3.0	138	88	1	628	46	5	7	40	1.54
49228871--49228941	30	2.4	30	80	0	79	18	30	25	25	1.98
49230017--49230103	25	3.5	25	93	3	140	31	24	13	31	1.94
49236089--49236273	61	3.1	59	79	6	201	29	20	15	35	1.93
49236238--49236302	32	2.0	32	87	0	94	24	27	10	36	1.89
49236255--49236469	61	3.5	61	73	5	175	26	27	9	35	1.88
49236603--49236755	53	2.9	54	82	3	195	26	24	14	33	1.94
49240873--49240989	61	1.9	61	82	3	146	25	24	14	35	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210