genome.fa.s3.2.7.7.80.10.50.1000.197.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr8
Parameters: 2 7 7 80 10 50 1000
Length:  70076365

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   

This is table  197  of  210  ( 25174 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65470478--65471369	446	2.0	446	99	0	1759	38	4	19	37	1.73
65479777--65480312	41	13.1	41	99	0	1063	29	24	19	27	1.98
65485585--65485648	23	2.6	24	80	7	76	62	1	0	35	1.05
65485589--65485622	17	1.9	17	88	5	50	67	0	0	32	0.91
65485593--65485631	12	3.3	12	78	7	53	71	0	0	28	0.86
65508098--65508163	13	5.1	13	78	7	71	33	6	22	37	1.79
65509184--65509226	21	2.1	20	83	12	52	72	0	0	27	0.85
65509950--65510150	100	2.0	100	99	0	393	37	13	19	28	1.91
65510425--65510519	37	2.5	37	82	3	100	17	13	24	44	1.85
65510430--65510519	39	2.4	37	83	3	99	18	14	21	45	1.85
65511689--65511738	11	4.6	11	85	5	57	66	4	0	30	1.10
65511700--65511740	11	3.7	11	90	0	64	60	4	0	34	1.18
65511684--65511744	32	1.9	31	90	3	95	62	4	0	32	1.17
65511814--65511842	3	9.7	3	100	0	58	31	0	0	68	0.89
65512739--65512776	15	2.4	17	82	13	53	39	18	2	39	1.65
65513449--65513506	1	58.0	1	92	0	89	94	5	0	0	0.29
65513440--65513506	34	2.0	34	93	0	116	88	10	1	0	0.59
65513445--65513501	28	2.1	28	96	3	107	91	8	0	0	0.43
65517270--65517458	98	1.9	98	100	0	378	21	20	31	27	1.98
65521227--65521260	14	2.4	14	90	0	50	29	0	5	64	1.17
65525303--65525376	26	2.8	26	93	0	130	45	17	13	22	1.83
65536873--65536920	22	2.2	21	78	7	51	33	2	4	60	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65546829--65546860	15	2.1	15	100	0	64	31	6	31	31	1.82
65554572--65554623	22	2.4	22	100	0	104	40	5	32	21	1.77
65556743--65557394	216	3.0	216	96	0	1205	40	12	13	33	1.82
65558736--65559145	206	2.0	205	88	0	613	40	20	15	23	1.91
65564497--65564639	70	2.0	71	98	1	279	43	6	6	42	1.58
65579971--65580000	10	2.9	10	95	5	51	50	6	3	40	1.45
65583163--65583305	57	2.4	59	85	9	175	30	21	25	22	1.99
65584272--65584296	2	12.5	2	100	0	50	0	48	0	52	1.00
65590668--65590692	13	1.9	13	100	0	50	24	0	0	76	0.80
65592028--65592075	17	2.8	17	100	0	96	41	6	4	47	1.48
65596063--65596138	39	2.0	38	82	7	91	38	3	2	55	1.33
65600228--65600258	6	5.2	6	96	0	53	45	0	54	0	0.99
65606606--65607000	210	1.9	211	88	0	594	37	15	17	29	1.91
65608951--65609091	51	2.8	50	78	8	124	37	7	17	37	1.77
65613084--65613157	13	5.5	13	79	9	76	39	28	6	25	1.81
65613094--65613137	16	2.9	16	87	12	67	34	31	6	27	1.83
65619922--65619983	30	2.1	29	87	3	88	33	17	17	30	1.94
65624398--65624475	30	2.7	29	80	4	93	25	19	7	47	1.76
65634550--65634587	20	1.9	20	88	0	58	55	21	0	23	1.44
65638203--65638227	5	5.0	5	100	0	50	80	0	0	20	0.72
65641948--65642015	30	2.3	30	89	0	100	42	17	16	23	1.88
65645322--65645394	30	2.3	31	83	6	94	27	16	34	21	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65649648--65649747	29	3.4	29	85	8	123	21	14	21	44	1.86
65653792--65653825	17	2.0	17	94	0	59	41	0	14	44	1.45
65656541--65656583	21	2.0	21	90	0	68	44	18	25	11	1.84
65657258--65657297	21	1.9	21	84	0	53	50	20	0	30	1.49
65660179--65660208	15	2.0	15	93	0	51	60	0	3	36	1.14
65669347--65669410	28	2.3	28	78	7	69	12	9	6	71	1.29
65669427--65669535	46	2.2	51	81	14	131	44	1	0	52	1.18
65669427--65669496	22	3.1	22	85	4	86	41	1	1	55	1.17
65669596--65669634	16	2.4	16	95	0	69	38	2	0	58	1.12
65670196--65670263	22	3.0	22	76	2	55	41	4	2	51	1.37
65670291--65670322	15	2.1	15	94	0	55	31	21	15	31	1.95
65680830--65680882	26	2.0	27	96	3	99	18	7	33	39	1.79
65680868--65680930	33	1.9	33	100	0	126	25	0	39	34	1.56
65680836--65680930	16	6.2	16	81	14	121	23	2	36	37	1.67
65690748--65690792	20	2.2	20	84	0	54	55	6	0	37	1.26
65692852--65692891	19	2.0	21	85	9	57	7	30	10	52	1.62
65700054--65700181	28	4.6	28	81	5	125	32	20	16	30	1.94
65700076--65700181	28	3.8	28	86	2	151	33	21	16	27	1.95
65700076--65700180	55	1.9	55	88	0	156	34	21	17	26	1.95
65712863--65713227	102	3.5	106	89	4	540	30	18	20	30	1.96
65713251--65713572	110	2.9	108	86	9	391	28	19	18	32	1.96
65721214--65721268	25	2.2	24	90	9	85	56	3	3	36	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65729880--65729952	38	1.9	38	86	5	103	36	1	4	57	1.26
65733422--65733468	24	2.0	24	84	16	62	31	0	17	51	1.46
65733627--65733761	40	3.5	38	75	12	116	26	17	23	31	1.97
65737266--65737485	40	5.5	40	87	5	320	19	31	17	31	1.95
65737266--65737485	79	2.8	79	86	4	309	19	31	17	31	1.95
65737397--65737462	20	3.3	20	75	8	80	15	34	16	33	1.90
65740295--65740453	44	3.7	43	74	12	139	29	27	17	25	1.97
65751596--65751622	4	6.8	4	100	0	54	25	0	22	51	1.48
65755265--65755290	6	4.3	6	100	0	52	15	0	0	84	0.62
65759852--65759896	16	2.8	16	80	12	56	48	0	2	48	1.13
65759908--65759949	16	2.7	15	82	13	50	59	2	0	38	1.10
65760219--65760251	7	4.9	7	92	7	59	42	0	0	57	0.98
65779998--65780024	11	2.5	11	100	0	54	14	0	22	62	1.31
65782980--65783204	117	1.9	117	99	0	441	39	5	15	39	1.71
65784282--65784372	41	2.2	42	86	5	123	17	21	16	43	1.87
65787611--65787659	9	5.4	9	87	0	71	42	24	8	24	1.81
65787611--65787659	18	2.7	18	96	0	89	42	24	8	24	1.81
65793129--65793194	21	3.1	21	78	4	71	31	1	6	60	1.30
65795370--65795436	21	3.2	21	83	8	66	49	19	1	29	1.57
65795385--65795447	20	3.1	20	84	6	65	44	15	6	33	1.72
65796051--65796095	5	8.8	5	90	4	72	2	22	0	75	0.91
65799159--65799213	27	2.0	27	96	0	101	32	9	23	34	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65801044--65801133	41	2.2	41	91	0	144	33	16	20	30	1.94
65801181--65801270	41	2.2	41	78	6	101	16	18	21	43	1.88
65802316--65802399	37	2.3	35	84	8	98	65	2	23	8	1.32
65813257--65813325	29	2.4	29	83	13	81	42	1	4	52	1.30
65815931--65815957	5	5.4	5	100	0	54	22	0	18	59	1.38
65821320--65821389	24	2.9	24	97	0	131	8	35	21	34	1.84
65824071--65824101	14	2.1	15	94	5	55	51	9	6	32	1.60
65825081--65825128	24	2.0	24	84	8	62	16	14	35	33	1.89
65839395--65839463	35	2.0	35	97	0	129	47	20	17	14	1.82
65841349--65841385	19	1.9	19	88	0	56	59	27	2	10	1.44
65852884--65852944	17	3.4	17	70	12	59	27	9	21	40	1.85
65854937--65855032	19	4.8	19	88	5	111	39	15	7	37	1.75
65865674--65865711	20	1.9	20	94	0	67	52	7	5	34	1.53
65869084--65869141	28	2.1	28	96	0	107	27	20	12	39	1.88
65884670--65884765	31	3.1	31	95	3	174	31	9	13	45	1.75
65901676--65901749	38	1.9	38	94	0	130	37	16	9	36	1.81
65905794--65905823	14	2.1	15	93	6	53	40	0	0	60	0.97
65907882--65907922	21	2.0	21	85	9	57	46	12	7	34	1.69
65908504--65908557	27	2.0	27	88	0	81	35	24	22	18	1.96
65908728--65908779	26	2.1	25	86	10	72	40	21	19	19	1.92
65909047--65909167	27	4.5	27	76	4	93	32	10	19	37	1.87
65909173--65909292	63	1.9	63	89	3	188	33	23	20	23	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65912634--65912679	25	1.9	25	86	8	69	34	6	8	50	1.59
65918113--65918236	63	2.0	63	85	0	167	24	25	25	25	2.00
65918237--65918262	12	2.2	12	100	0	52	23	42	15	19	1.89
65923158--65923217	30	2.0	31	86	3	86	40	0	40	20	1.52
65923515--65923552	18	2.1	18	90	0	58	39	15	10	34	1.82
65933467--65933528	24	2.6	23	80	7	70	24	20	1	53	1.55
65936403--65936749	173	2.0	174	99	0	687	33	13	8	44	1.75
65940014--65940038	7	3.6	7	100	0	50	0	16	44	40	1.47
65942959--65943028	28	2.5	28	93	4	115	47	7	7	38	1.59
65943071--65943133	33	1.9	33	83	0	81	53	3	3	39	1.33

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210