genome.fa.s3.2.7.7.80.10.50.1000.98.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr8
Parameters: 2 7 7 80 10 50 1000
Length:  70076365

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   

This is table  98  of  210  ( 25174 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33598606--33598665	26	2.3	26	85	5	77	23	20	20	36	1.95
33604321--33604364	14	3.1	15	87	12	58	47	9	0	43	1.35
33604333--33604368	15	2.4	16	86	13	58	47	8	0	44	1.33
33626200--33626291	30	2.9	32	76	12	100	38	16	1	44	1.55
33626271--33626327	29	1.9	30	82	3	71	42	19	5	33	1.74
33634560--33634749	25	7.6	25	69	9	100	20	23	18	37	1.94
33644777--33644852	4	18.5	4	75	22	61	75	0	2	22	0.93
33644784--33644833	5	10.0	5	75	16	50	76	0	4	20	0.95
33644769--33644853	30	2.9	29	86	5	118	74	0	2	23	0.94
33644777--33644853	13	5.1	16	77	19	78	75	0	2	22	0.93
33649300--33649504	105	2.0	105	93	0	347	21	22	27	28	1.99
33651158--33651183	9	2.9	9	100	0	52	80	0	0	19	0.71
33651412--33651447	15	2.5	14	86	8	54	44	8	0	47	1.33
33657802--33657831	3	10.0	3	100	0	60	66	0	0	33	0.92
33665982--33666170	96	2.0	97	98	1	371	25	17	13	42	1.87
33679954--33679980	4	6.8	4	100	0	54	48	0	0	51	1.00
33681104--33681150	23	2.0	23	100	0	94	40	17	4	38	1.69
33681646--33681698	20	2.6	19	80	14	61	43	15	13	28	1.84
33684491--33685408	506	1.8	506	79	5	1084	33	16	10	38	1.84
33684529--33685581	252	4.2	249	74	9	846	33	17	10	37	1.84
33686356--33686396	19	2.3	18	87	8	57	53	0	7	39	1.29
33689498--33689523	7	3.7	7	100	0	52	15	0	0	84	0.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33699572--33699633	3	20.7	3	79	0	70	32	3	4	59	1.34
33699714--33699759	23	2.0	24	91	4	76	39	10	0	50	1.38
33699701--33699762	27	2.3	27	88	5	90	35	8	3	53	1.47
33699811--33699857	20	2.4	19	76	13	51	38	10	0	51	1.37
33699990--33700075	19	4.7	17	71	21	59	18	5	5	69	1.29
33701628--33701786	80	2.0	80	97	0	300	43	5	6	44	1.53
33709872--33710190	135	2.3	136	89	6	470	31	7	15	45	1.74
33727683--33728205	44	11.8	44	70	6	210	29	17	24	28	1.97
33727703--33728209	89	5.7	89	91	0	730	30	17	24	27	1.97
33727719--33728207	45	11.0	45	72	5	330	30	18	24	27	1.98
33738816--33738905	39	2.2	40	90	3	137	40	2	4	53	1.33
33739781--33739824	7	6.3	7	97	0	70	22	0	31	45	1.53
33739900--33740188	126	2.3	126	92	0	479	33	20	19	25	1.96
33743766--33743808	18	2.4	18	88	0	59	44	9	27	18	1.80
33743902--33743974	30	2.4	30	93	0	119	10	13	45	30	1.78
33745679--33745725	11	4.4	10	82	12	58	48	0	29	21	1.50
33749220--33749245	7	3.7	7	100	0	52	84	0	0	15	0.62
33749196--33749251	14	4.2	13	77	6	58	71	1	3	23	1.11
33749603--33749659	29	2.0	29	89	0	87	28	21	17	33	1.96
33750576--33750602	3	9.0	3	100	0	54	66	0	0	33	0.92
33753404--33753636	46	5.0	46	93	2	378	37	9	25	27	1.87
33753404--33753636	93	2.5	92	94	2	396	37	9	25	27	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33755981--33756964	51	19.3	51	98	0	1905	31	15	23	29	1.95
33757271--33757565	136	2.2	136	93	0	500	49	9	11	29	1.70
33757853--33757885	13	2.5	13	90	0	57	39	0	27	33	1.57
33759379--33759441	32	1.9	34	83	6	85	38	3	4	53	1.38
33759584--33759608	13	1.9	13	100	0	50	36	16	16	32	1.90
33761257--33761306	23	2.2	23	89	7	75	50	8	0	42	1.32
33768427--33768512	31	2.5	35	72	25	94	52	3	0	44	1.18
33768440--33768508	30	2.2	32	87	7	97	52	4	0	43	1.21
33777284--33777551	134	2.0	134	100	0	536	36	18	5	38	1.76
33779035--33779090	24	2.3	24	79	11	69	14	26	21	37	1.92
33779336--33779396	5	12.2	5	96	0	113	37	0	22	39	1.55
33782849--33782877	6	4.8	6	100	0	58	82	0	0	17	0.66
33783748--33783802	21	2.6	21	88	0	83	23	9	38	29	1.85
33783914--33783969	18	3.1	18	72	23	55	55	3	1	39	1.28
33787149--33787192	6	7.2	6	84	5	61	40	0	59	0	0.98
33787149--33787192	18	2.4	19	96	3	81	40	0	59	0	0.98
33787149--33787201	24	2.2	24	86	0	70	41	0	58	0	0.98
33789621--33789688	15	4.4	15	71	16	50	52	5	0	41	1.25
33790081--33790161	31	2.5	32	84	4	101	51	16	4	27	1.64
33790183--33790226	14	3.1	14	81	18	56	40	20	6	31	1.79
33794632--33794699	26	2.7	23	70	18	55	67	4	1	26	1.18
33795812--33795849	16	2.4	16	86	8	51	44	18	0	36	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33795927--33795993	29	2.3	29	78	0	71	22	16	17	43	1.88
33796195--33796241	22	2.1	22	92	0	76	27	31	0	40	1.57
33804620--33804676	21	2.7	21	88	0	87	15	15	43	24	1.86
33814465--33814513	21	2.3	21	75	6	55	28	22	32	16	1.95
33817430--33817816	196	2.0	198	91	1	625	34	18	11	34	1.88
33820381--33820428	24	2.0	24	95	0	87	41	10	25	22	1.85
33820518--33820593	21	3.6	21	80	3	64	17	23	19	39	1.92
33821839--33821882	21	2.2	20	84	12	54	47	11	4	36	1.60
33826084--33826281	109	1.8	109	83	0	261	31	16	25	26	1.97
33842020--33842060	21	2.0	21	90	9	66	53	2	12	31	1.51
33844996--33845039	21	2.2	20	87	4	61	77	2	0	20	0.88
33846694--33846729	13	2.8	13	91	8	56	47	5	8	38	1.57
33847825--33847988	50	3.3	50	91	1	249	24	26	21	27	1.99
33847835--33847980	25	5.8	25	84	6	170	24	28	20	26	1.99
33847823--33847992	75	2.3	75	80	10	195	25	27	20	27	1.99
33856096--33856145	24	2.1	24	88	7	75	32	2	4	62	1.25
33856096--33856194	13	7.5	13	69	19	55	32	2	3	62	1.22
33862554--33862603	14	3.5	13	80	20	55	0	18	8	74	1.06
33862554--33862599	15	3.1	15	82	14	51	0	17	8	73	1.07
33863370--33863440	28	2.5	28	76	17	67	30	4	2	61	1.29
33863375--33863563	92	2.1	90	88	7	285	33	4	5	57	1.41
33868133--33868481	132	2.6	132	90	2	549	30	19	24	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33868488--33868608	44	2.8	44	87	0	161	23	19	25	31	1.98
33868491--33868625	44	3.1	44	82	2	155	28	17	23	30	1.97
33870302--33870336	12	2.8	12	91	4	52	8	2	2	85	0.79
33880273--33880337	31	2.1	31	88	0	94	32	10	13	43	1.79
33881733--33881891	78	2.1	78	96	1	293	27	27	11	33	1.92
33883626--33883787	9	17.3	9	67	18	73	12	2	59	24	1.46
33883586--33883671	12	7.2	12	73	10	50	13	3	59	23	1.50
33883674--33883755	36	2.3	36	82	4	94	15	3	58	21	1.53
33883704--33883876	36	4.6	36	70	19	113	14	4	60	21	1.51
33883767--33884114	105	3.2	105	85	9	498	13	4	58	23	1.55
33883881--33884379	129	4.1	119	88	7	614	13	4	58	23	1.54
33884094--33884140	12	3.9	12	78	10	51	10	2	65	21	1.33
33884093--33884637	18	29.3	18	65	14	90	11	4	60	24	1.48
33884235--33884745	24	21.7	23	70	15	232	11	4	59	24	1.50
33884160--33884655	72	7.2	70	69	19	258	11	4	59	25	1.49
33884289--33884475	96	1.9	96	88	2	277	11	4	58	26	1.51
33884356--33884538	42	4.7	40	72	16	159	8	4	59	27	1.48
33884453--33884631	42	4.4	42	73	9	113	10	3	60	25	1.45
33884445--33884745	72	4.2	71	79	9	281	10	4	60	24	1.49
33884691--33884745	12	4.6	12	79	0	65	9	7	60	23	1.52
33884628--33884772	72	2.0	72	84	5	186	14	7	55	22	1.65
33884779--33884829	24	2.1	24	81	0	57	11	3	60	23	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33892970--33893007	20	1.9	20	94	0	67	28	0	15	55	1.41
33894733--33894856	37	3.3	37	88	2	158	17	11	30	40	1.85
33895676--33895727	10	5.2	9	76	17	50	28	3	0	67	1.08
33899719--33899845	35	3.6	35	84	2	175	40	30	11	17	1.84
33900753--33900824	6	12.0	6	100	0	144	0	0	16	83	0.65
33901844--33901884	20	2.0	21	90	4	66	34	41	2	21	1.67
33903358--33903390	10	3.7	9	88	11	50	84	6	0	9	0.76
33903358--33903395	18	2.1	18	90	5	58	78	7	0	13	0.94
33903358--33903390	9	3.5	10	92	8	52	84	6	0	9	0.76
33903387--33903501	30	3.9	30	82	7	130	32	24	5	38	1.78

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210