genome.fa.s3.2.7.7.80.10.50.1000.146.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr8
Parameters: 2 7 7 80 10 50 1000
Length:  70076365

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   

This is table  146  of  210  ( 25174 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48462585--48462644	26	2.3	27	80	13	72	53	18	1	26	1.54
48473480--48473526	24	2.0	24	82	0	58	42	17	2	38	1.61
48474003--48474188	41	4.5	41	84	2	214	28	21	20	29	1.98
48474050--48474204	82	1.9	82	83	2	204	30	18	21	29	1.96
48474050--48474188	41	3.4	41	91	0	215	29	18	20	30	1.97
48474301--48474431	61	2.1	61	81	2	156	40	16	8	35	1.78
48474431--48474590	65	2.5	62	78	12	175	43	15	8	33	1.76
48475348--48475381	17	2.0	17	88	11	52	64	17	2	14	1.40
48482006--48482148	41	3.5	41	84	1	189	29	18	20	31	1.96
48482261--48482391	61	2.1	61	78	2	138	41	16	8	34	1.78
48491933--48492008	33	2.3	33	86	0	98	48	17	15	18	1.81
48494596--48494628	13	2.8	12	90	9	50	36	9	15	39	1.79
48498932--48498974	19	2.2	20	84	12	63	32	18	0	48	1.48
48499053--48499141	45	2.0	45	93	0	151	33	24	17	23	1.96
48500981--48502900	960	2.0	960	99	0	3797	31	17	9	41	1.81
48503665--48503885	50	4.4	49	81	7	230	28	14	25	30	1.95
48503665--48503885	101	2.2	102	83	7	263	28	14	25	30	1.95
48505642--48505694	26	2.0	27	92	3	90	24	20	24	30	1.99
48508529--48508809	77	3.6	78	79	4	282	30	12	11	45	1.77
48516605--48516655	20	2.5	20	81	6	59	29	11	15	43	1.82
48519146--48519261	58	2.0	58	96	0	214	45	11	17	25	1.81
48520426--48520488	33	1.9	33	81	15	78	38	1	22	38	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48520836--48520885	20	2.5	20	87	6	66	28	14	18	40	1.89
48520852--48520890	20	2.1	19	86	13	55	30	15	15	38	1.88
48523986--48524038	26	2.0	26	85	0	70	33	0	9	56	1.32
48533316--48533436	35	3.5	35	71	13	104	25	20	23	30	1.98
48542792--48542847	26	2.2	26	86	0	76	33	26	17	21	1.96
48543009--48543338	27	12.3	27	81	4	330	20	16	19	43	1.88
48543012--48543338	81	4.1	81	86	5	439	20	15	19	44	1.87
48544117--48544219	51	2.0	51	94	0	179	25	22	15	36	1.93
48548843--48548905	6	10.2	6	81	8	65	82	0	17	0	0.67
48548837--48548905	12	5.5	12	78	10	75	82	1	15	0	0.74
48548846--48548905	19	3.2	18	80	15	77	83	0	16	0	0.65
48548838--48548906	25	2.8	25	87	12	90	81	1	17	0	0.77
48548837--48548910	39	1.9	38	88	2	112	79	1	18	0	0.80
48549780--48550291	143	3.6	143	86	2	636	30	19	23	26	1.98
48550088--48550299	44	4.6	45	70	13	142	30	17	24	26	1.97
48550223--48550323	44	2.3	44	81	10	109	29	22	21	25	1.99
48551639--48551670	12	2.8	12	95	4	57	31	6	0	62	1.20
48551622--48551682	27	2.3	27	80	5	70	29	6	1	62	1.30
48554828--48555081	44	5.5	45	70	9	152	27	20	25	26	1.99
48554665--48555174	143	3.6	143	89	1	745	29	20	22	27	1.99
48556401--48556432	12	2.8	12	95	4	57	31	6	0	62	1.20
48557384--48557427	17	2.5	18	82	14	56	45	2	0	52	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48562221--48562259	12	3.2	12	85	0	51	20	23	5	51	1.67
48569828--48569999	50	3.3	50	79	8	166	23	27	21	27	1.99
48582298--48582322	13	1.9	13	100	0	50	32	0	20	48	1.50
48586331--48586371	18	2.3	18	91	0	64	51	0	0	48	1.00
48606247--48606437	50	3.7	50	82	4	211	27	20	27	23	1.99
48606251--48606437	100	1.8	103	82	6	245	27	20	28	23	1.99
48613388--48613559	50	3.5	50	81	4	152	29	22	26	21	1.99
48615708--48615814	54	2.0	54	98	0	205	45	10	14	28	1.78
48624362--48624405	22	2.0	22	81	0	52	47	27	2	22	1.63
48639231--48639329	41	2.4	41	74	0	99	34	14	30	21	1.93
48645959--48646005	20	2.3	20	92	0	76	53	0	21	25	1.46
48651909--48652007	41	2.4	41	74	0	99	34	14	30	21	1.93
48658637--48658683	20	2.3	20	92	0	76	53	0	21	25	1.46
48660369--48660425	24	2.4	23	82	5	78	49	19	17	14	1.80
48660381--48660436	24	2.3	24	93	0	94	46	16	16	21	1.84
48661710--48661754	22	2.0	23	83	16	58	53	6	17	22	1.67
48664240--48664281	22	2.0	22	90	4	68	54	14	4	26	1.59
48664274--48664317	23	2.0	23	86	8	65	54	4	4	36	1.41
48665450--48665489	21	1.9	21	89	0	62	42	12	10	35	1.76
48670523--48670583	31	2.0	30	83	3	77	39	16	24	19	1.92
48675975--48676012	18	2.1	18	95	0	67	42	23	10	23	1.85
48678551--48678595	18	2.5	18	88	0	63	40	4	33	22	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48678548--48678604	18	2.9	19	79	10	62	36	3	33	26	1.74
48686133--48686414	50	5.6	50	85	5	338	26	19	31	21	1.97
48686121--48686414	150	2.0	148	84	4	385	26	20	31	21	1.98
48689069--48689111	19	2.2	20	84	12	63	32	18	0	48	1.48
48689240--48689429	51	3.8	50	77	6	186	30	28	17	23	1.97
48689242--48689426	101	1.8	101	88	5	284	30	27	17	24	1.97
48693454--48693506	24	2.2	25	83	10	65	54	0	3	41	1.18
48702264--48702297	17	2.0	17	94	0	59	20	11	8	58	1.59
48703198--48703238	22	1.9	22	85	5	57	31	9	9	48	1.69
48713846--48714253	41	9.7	41	78	9	389	35	25	16	23	1.95
48713892--48714253	84	4.3	83	88	4	511	35	24	16	22	1.94
48714463--48714568	54	2.0	54	100	0	212	33	16	3	45	1.66
48724824--48724867	14	3.1	14	78	12	54	25	9	0	65	1.21
48725766--48725811	21	2.2	21	88	7	67	15	4	6	73	1.19
48725740--48725806	25	2.7	25	83	4	82	19	7	4	68	1.31
48727306--48727339	13	2.7	13	90	4	52	50	0	2	47	1.16
48732086--48732114	12	2.3	13	94	5	51	65	6	6	20	1.40
48743489--48743526	19	2.0	19	90	10	60	21	39	0	39	1.53
48746433--48746676	40	6.1	40	85	2	278	34	15	28	21	1.94
48746447--48746674	120	1.9	119	85	2	314	34	14	29	21	1.93
48751141--48751197	25	2.3	25	93	0	96	31	21	19	28	1.97
48756510--48756585	29	2.6	29	82	2	89	25	23	15	35	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48756510--48756627	59	2.0	58	80	11	134	23	22	13	40	1.89
48756616--48756739	29	4.3	29	80	4	142	26	24	11	37	1.89
48756616--48756739	58	2.1	58	83	0	158	26	24	11	37	1.89
48759284--48759314	15	2.1	15	93	0	53	6	32	25	35	1.82
48766519--48766563	22	2.0	23	83	12	58	31	0	26	42	1.56
48776562--48776635	24	3.0	24	79	11	78	24	25	21	28	1.99
48776572--48776659	25	3.6	25	78	9	72	27	23	20	28	1.99
48779683--48779716	11	2.9	12	86	8	52	23	29	38	8	1.85
48780911--48780951	16	2.7	15	76	23	50	29	24	0	46	1.53
48799861--48799916	29	2.0	28	89	6	87	33	3	5	57	1.39
48800287--48800319	15	2.2	15	89	10	50	39	0	0	60	0.97
48802453--48802482	14	2.1	14	93	0	51	16	43	0	40	1.48
48808983--48809023	12	3.2	13	86	13	66	68	14	9	7	1.39
48812098--48812192	45	2.1	45	84	3	129	25	21	24	29	1.99
48813866--48814050	96	1.9	95	85	4	255	32	18	13	35	1.90
48814925--48814968	14	3.1	14	81	12	54	15	6	4	72	1.22
48832428--48832495	32	2.1	32	100	0	136	30	19	5	44	1.74
48837437--48837488	26	2.0	26	96	0	95	25	19	21	34	1.96
48844881--48844923	6	7.3	6	89	5	70	81	2	16	0	0.79
48844881--48844941	12	5.2	12	86	2	70	77	3	14	4	1.07
48850278--48850329	27	2.0	27	84	3	70	32	23	25	19	1.97
48857026--48857115	26	3.5	26	89	0	126	40	21	18	20	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48871596--48871822	51	4.5	51	80	4	262	29	14	26	28	1.96
48871579--48871818	102	2.4	102	92	0	381	28	14	27	29	1.95
48871784--48871856	38	1.9	38	97	0	137	27	15	28	28	1.96
48871736--48871900	89	1.9	89	88	3	253	27	15	26	29	1.96
48871682--48871943	139	1.9	140	82	4	332	30	14	25	29	1.95
48884087--48884126	17	2.6	16	84	15	57	15	45	0	40	1.46
48884091--48884132	19	2.2	19	91	0	66	14	45	0	40	1.45
48892823--48892870	23	2.1	22	85	11	62	25	2	16	56	1.51
48893657--48893681	5	5.0	5	100	0	50	80	0	0	20	0.72
48894732--48894779	15	3.1	16	83	16	66	16	47	0	35	1.47

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210