genome.fa.s3.2.7.7.80.10.50.1000.143.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr8
Parameters: 2 7 7 80 10 50 1000
Length:  70076365

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   

This is table  143  of  210  ( 25174 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47462553--47462584	2	16.5	2	93	6	57	50	0	0	50	1.00
47465719--47465781	30	2.1	30	82	5	74	47	6	1	44	1.38
47468928--47468963	2	18.0	2	100	0	72	50	0	0	50	1.00
47471149--47471229	40	2.0	40	92	0	135	37	18	29	14	1.91
47475688--47475727	21	2.0	20	95	5	71	32	2	0	65	1.06
47475789--47475859	16	4.2	16	67	19	54	47	1	2	47	1.25
47475710--47475840	61	2.2	60	82	12	153	41	2	3	52	1.32
47475759--47475852	26	3.7	26	72	16	81	43	2	2	52	1.25
47475743--47475859	24	4.8	24	70	13	78	45	1	3	49	1.29
47476048--47476087	16	2.5	16	87	0	53	25	27	5	42	1.75
47481543--47481784	50	4.7	50	80	5	211	22	27	22	27	1.99
47490475--47490664	50	3.7	50	83	4	191	23	28	20	27	1.99
47500367--47500415	16	2.9	17	93	6	91	40	6	28	24	1.79
47502366--47503137	385	2.0	384	94	0	1364	30	15	25	28	1.96
47504186--47504221	17	2.1	17	100	0	72	50	5	22	22	1.70
47504863--47505173	169	1.8	169	96	2	581	40	23	9	26	1.86
47506380--47506455	23	3.3	23	90	0	125	30	25	21	23	1.99
47506673--47506711	18	2.2	17	86	13	53	48	20	0	30	1.50
47507783--47507824	7	6.1	7	88	5	68	40	0	47	11	1.40
47517524--47517598	31	2.4	31	93	0	123	21	14	12	52	1.74
47520966--47520996	16	1.9	16	93	0	53	54	0	22	22	1.44
47527635--47527660	12	2.2	12	100	0	52	15	7	0	76	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47538159--47538196	9	4.2	9	96	0	67	18	44	0	36	1.50
47545146--47545181	18	2.1	17	90	10	56	50	16	11	22	1.77
47549683--47549776	41	2.3	41	88	0	143	21	26	26	25	1.99
47563383--47563421	17	2.2	19	86	9	55	28	2	2	66	1.18
47567044--47567088	21	2.0	21	87	8	63	80	6	8	4	1.03
47567524--47567579	6	9.2	6	77	14	53	76	5	16	1	1.05
47567531--47567572	20	2.2	19	87	12	59	78	7	14	0	0.95
47567915--47568111	109	1.8	108	86	3	288	25	18	10	45	1.80
47568583--47568930	44	8.0	44	76	6	316	26	15	28	30	1.96
47568636--47568932	129	2.3	131	88	3	440	26	15	27	30	1.96
47568996--47569448	100	4.5	100	85	3	581	29	21	22	25	1.99
47569021--47569448	50	8.6	50	69	4	236	29	22	22	25	1.99
47568996--47569448	200	2.3	200	87	3	646	29	21	22	25	1.99
47569489--47570351	40	20.3	40	69	13	352	33	22	20	23	1.97
47569466--47569841	129	2.9	129	97	0	698	32	23	21	22	1.98
47569643--47570009	169	2.2	169	95	0	653	32	23	22	22	1.98
47569812--47570222	129	3.2	128	89	1	632	33	22	21	23	1.97
47569514--47570138	298	2.1	298	93	0	1052	32	22	21	23	1.98
47570109--47570294	88	2.2	86	89	3	286	33	21	18	25	1.96
47569514--47570268	298	2.5	297	84	3	840	33	22	21	22	1.97
47570152--47570312	44	3.7	44	72	12	141	33	21	20	24	1.97
47569457--47570401	129	7.4	128	79	10	394	33	22	20	23	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47571199--47571370	84	2.0	84	96	2	319	38	6	15	39	1.74
47572144--47572182	17	2.2	19	86	9	55	28	2	2	66	1.18
47572297--47572410	38	3.0	38	63	14	99	25	9	7	57	1.55
47572260--47572410	76	2.0	76	98	0	293	27	9	6	55	1.57
47574083--47574143	24	2.5	24	82	12	79	77	6	6	9	1.13
47574088--47574148	22	2.6	22	82	10	68	75	6	4	13	1.16
47574077--47574183	33	3.3	34	71	13	82	71	5	8	14	1.27
47581742--47581932	50	3.8	50	79	3	197	26	21	29	22	1.99
47584040--47584084	23	2.0	23	95	0	81	40	22	11	26	1.87
47587123--47587509	50	8.0	50	83	6	483	25	20	32	21	1.98
47587208--47587286	39	2.0	39	92	0	131	24	17	37	20	1.93
47587158--47587436	89	3.0	89	80	10	342	24	19	34	21	1.96
47589060--47589103	23	1.9	23	90	0	70	40	25	4	29	1.75
47590954--47590999	23	2.0	22	84	16	58	43	2	23	30	1.66
47599189--47599419	29	7.9	29	81	5	243	20	26	14	38	1.92
47599185--47599476	88	3.3	88	84	5	317	23	25	13	37	1.92
47599189--47599476	29	9.8	29	78	3	236	23	25	13	37	1.92
47601733--47601780	23	2.1	23	100	0	96	29	33	8	29	1.86
47605841--47605907	25	2.7	25	78	17	84	28	25	19	26	1.99
47613703--47613731	15	1.9	15	100	0	58	10	34	27	27	1.89
47634864--47635127	130	2.0	130	96	0	483	31	17	14	36	1.90
47639674--47639704	16	2.0	16	93	6	55	32	0	9	58	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47645435--47645512	28	2.8	28	81	14	81	28	3	2	65	1.23
47649222--47649265	18	2.7	15	86	10	52	36	4	0	59	1.18
47654605--47654763	85	1.9	85	79	0	183	38	16	17	27	1.91
47662105--47662327	111	2.0	112	99	0	439	27	8	15	48	1.73
47666416--47666476	30	2.0	30	100	0	122	32	22	6	37	1.80
47672338--47672380	21	1.9	24	86	13	65	51	0	0	48	1.00
47672526--47672564	11	3.5	11	86	6	53	48	0	5	46	1.24
47673104--47673281	76	2.3	74	92	5	236	47	7	7	37	1.62
47673898--47673922	7	3.6	7	100	0	50	16	0	0	84	0.63
47678854--47678943	28	3.3	27	79	13	85	17	26	18	36	1.94
47680604--47680649	23	2.0	23	100	0	92	30	30	13	26	1.93
47687072--47687202	41	3.1	41	79	5	120	32	26	12	27	1.93
47692876--47692978	51	2.0	51	100	0	206	32	5	17	44	1.72
47698701--47698749	26	1.9	26	83	4	64	30	28	14	26	1.95
47698721--47698832	50	2.2	50	83	0	134	34	23	13	28	1.92
47704985--47705105	62	2.0	62	100	0	242	39	6	16	37	1.75
47705265--47705459	75	2.6	75	82	0	219	31	3	17	46	1.66
47705385--47705640	128	2.0	128	96	0	467	33	6	16	42	1.74
47705694--47705862	85	2.0	85	98	0	329	34	7	19	38	1.79
47705887--47705911	2	12.5	2	100	0	50	48	0	0	52	1.00
47705902--47706023	62	2.0	62	96	1	228	36	8	13	42	1.74
47718238--47718270	17	2.0	17	88	5	50	57	9	0	33	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47718996--47719037	22	1.9	22	90	0	66	21	23	30	23	1.99
47725899--47726083	100	1.8	100	93	3	318	33	16	11	38	1.85
47726233--47726293	22	2.7	23	87	7	90	49	1	0	49	1.10
47726269--47726308	16	2.5	16	87	0	53	47	2	5	45	1.38
47726241--47726308	22	3.4	20	71	23	54	50	1	2	45	1.26
47726381--47726406	9	2.9	9	100	0	52	34	0	7	57	1.27
47726475--47726513	15	2.6	15	95	0	69	69	7	0	23	1.14
47727093--47727124	15	2.2	15	94	5	57	53	6	3	37	1.42
47734953--47735015	24	2.6	24	94	0	108	23	25	6	44	1.77
47744962--47745007	22	2.1	22	100	0	92	32	13	32	21	1.92
47749033--47749077	22	2.0	22	100	0	90	26	22	24	26	2.00
47754019--47754208	27	7.0	27	83	5	107	20	15	21	42	1.89
47754033--47754208	54	3.3	53	84	1	226	19	17	19	43	1.88
47754032--47754208	81	2.2	81	84	0	237	19	16	20	43	1.88
47759372--47759404	3	11.0	3	100	0	66	66	0	0	33	0.92
47759464--47759498	16	2.3	16	90	9	56	82	0	17	0	0.66
47760615--47760707	18	4.7	18	73	22	80	47	1	27	23	1.59
47760603--47760687	42	2.0	42	95	0	152	44	3	28	23	1.70
47760613--47760671	21	2.8	20	71	28	52	47	3	27	22	1.67
47760666--47760727	32	1.9	33	83	9	83	46	1	25	25	1.62
47763662--47763705	18	2.4	18	73	0	52	38	0	0	61	0.96
47765511--47765566	24	2.3	24	85	8	78	35	21	28	14	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47766124--47766163	5	7.8	5	83	5	53	42	17	0	40	1.49
47774109--47774152	18	2.4	18	73	0	52	38	0	0	61	0.96
47775334--47775472	24	5.7	24	74	12	95	32	20	28	18	1.97
47775334--47775497	49	3.4	48	75	9	129	33	20	26	19	1.96
47775843--47775884	21	2.0	21	85	0	57	42	23	0	33	1.55
47780155--47780202	21	2.3	21	76	16	55	62	2	0	35	1.07
47783195--47783259	33	2.0	33	96	0	121	33	9	26	30	1.88
47784336--47784386	24	2.1	24	85	7	68	49	1	3	45	1.32
47784674--47784698	12	2.1	12	100	0	50	32	0	16	52	1.44
47785117--47785273	60	2.6	61	81	9	185	40	2	4	52	1.35

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210