genome.fa.s3.2.7.7.80.10.50.1000.93.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr8
Parameters: 2 7 7 80 10 50 1000
Length:  70076365

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   

This is table  93  of  210  ( 25174 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32012824--32012868	23	2.0	22	95	4	81	57	4	24	13	1.54
32018872--32018917	17	2.8	17	81	12	51	41	2	2	54	1.25
32018884--32018917	17	1.9	18	88	5	52	41	0	2	55	1.15
32031070--32031964	217	4.1	217	90	1	1305	28	20	22	27	1.99
32031071--32031972	44	20.8	44	67	14	252	29	20	22	27	1.99
32031803--32031971	45	3.8	45	81	8	177	30	20	22	26	1.98
32033790--32033823	13	2.4	14	90	9	52	41	5	0	52	1.25
32033870--32033937	16	4.2	16	81	12	70	19	1	4	75	1.06
32036700--32036777	29	2.7	29	83	2	93	38	5	19	37	1.74
32037571--32037622	25	2.2	24	82	6	61	36	3	1	57	1.28
32037581--32037638	25	2.4	24	85	5	73	37	1	0	60	1.07
32039685--32039744	30	2.0	30	90	6	95	31	25	3	40	1.72
32041499--32041541	18	2.4	18	92	0	68	20	27	9	41	1.83
32047310--32047677	125	2.9	124	88	2	522	27	19	17	35	1.94
32047755--32047883	34	3.8	33	81	5	150	44	15	0	39	1.52
32054398--32054442	21	2.1	21	100	0	90	46	17	15	20	1.84
32057063--32057092	9	3.3	9	95	0	51	26	46	13	13	1.80
32062441--32062718	88	3.1	88	87	0	376	33	9	19	37	1.84
32064512--32064985	69	6.9	69	80	1	468	31	26	22	18	1.97
32064519--32065010	206	2.4	208	79	4	548	31	27	22	18	1.97
32064512--32065010	138	3.6	137	78	5	522	31	27	22	19	1.97
32076904--32077002	30	3.0	30	76	20	117	34	3	22	40	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32079904--32079997	40	2.3	40	83	7	111	25	17	22	35	1.95
32085716--32085871	81	1.9	82	97	1	296	26	26	7	38	1.83
32088099--32088138	15	2.7	15	96	0	71	35	15	15	35	1.88
32092099--32092221	30	3.9	30	83	12	174	34	4	19	41	1.70
32098489--32098523	17	2.1	18	89	10	56	68	0	0	31	0.90
32101874--32101922	9	5.4	9	85	0	71	42	20	8	28	1.80
32101930--32101981	26	2.0	26	96	0	95	53	9	3	32	1.51
32104684--32104964	56	5.0	56	85	4	261	41	16	10	30	1.82
32104716--32104964	55	4.5	57	85	5	312	42	16	9	30	1.81
32104716--32104964	112	2.2	112	86	3	342	42	16	9	30	1.81
32106162--32106200	19	2.1	19	95	0	69	71	0	25	2	0.98
32106326--32106372	18	2.5	19	82	3	60	10	2	46	40	1.50
32110232--32110306	27	2.9	25	76	7	78	20	25	22	32	1.98
32110344--32110413	25	2.8	24	73	14	61	18	28	20	32	1.96
32112964--32113011	19	2.5	19	86	6	62	0	18	0	81	0.70
32112964--32113011	9	5.1	9	82	9	60	0	18	0	81	0.70
32113664--32113858	29	6.6	30	77	11	156	47	4	18	30	1.67
32113663--32113826	59	2.8	59	81	9	201	48	4	19	27	1.67
32113685--32113858	59	3.0	58	78	12	187	47	4	17	29	1.68
32114019--32114349	77	4.3	76	77	8	343	33	18	19	28	1.95
32114022--32114349	153	2.1	151	80	8	369	34	18	19	28	1.95
32120769--32120869	50	2.0	50	90	3	159	28	29	11	29	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32126308--32126346	19	2.1	19	85	0	51	30	2	7	58	1.39
32126860--32126885	5	5.2	5	100	0	52	0	23	57	19	1.40
32126905--32126959	11	4.9	11	78	8	58	0	25	0	74	0.82
32127041--32127082	11	3.7	11	78	15	50	0	35	0	64	0.94
32127039--32127094	13	3.9	15	78	15	57	1	35	0	62	1.06
32127243--32127268	11	2.4	11	100	0	52	0	0	19	80	0.71
32127643--32127728	31	2.9	32	80	11	85	48	5	19	25	1.71
32127657--32127732	31	2.5	31	85	6	93	50	3	17	28	1.64
32127747--32127795	14	3.6	14	91	5	75	26	4	0	69	1.06
32134006--32134053	25	2.0	25	87	4	71	14	27	20	37	1.92
32140973--32141142	52	3.1	52	82	17	241	37	13	13	35	1.84
32140987--32141114	63	2.0	63	100	0	256	37	12	14	35	1.83
32141055--32141163	52	2.1	51	83	10	132	37	14	14	33	1.87
32168210--32168268	29	2.0	29	100	0	118	47	10	13	28	1.75
32169670--32169695	3	8.7	3	100	0	52	34	0	34	30	1.58
32178354--32178387	16	2.1	16	88	5	50	8	0	14	76	1.01
32183899--32183967	36	1.9	36	85	5	95	21	37	2	37	1.69
32192185--32192250	27	2.4	27	87	0	87	30	16	31	21	1.95
32201871--32201912	15	2.8	15	78	10	50	26	0	26	47	1.52
32212597--32212662	13	5.0	13	70	17	55	25	1	3	69	1.11
32212588--32212654	21	3.3	20	78	15	66	28	1	2	67	1.14
32212601--32212662	26	2.4	25	78	10	61	24	1	3	70	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32214562--32214634	35	2.1	35	100	0	146	31	19	20	28	1.97
32218829--32218921	44	2.1	46	85	4	127	36	23	7	32	1.83
32218903--32218957	16	3.4	16	85	7	76	29	27	5	38	1.79
32219277--32219309	11	2.8	12	86	4	50	63	0	9	27	1.24
32219331--32219401	17	4.6	16	76	16	60	77	0	1	21	0.85
32219345--32219398	12	4.3	13	80	20	53	77	0	1	20	0.86
32219862--32219887	6	4.3	6	100	0	52	0	0	15	84	0.62
32219908--32219941	5	6.8	5	87	12	52	20	0	2	76	0.92
32231466--32231624	43	3.7	43	71	15	123	24	15	27	32	1.95
32249958--32250002	20	2.2	20	92	0	72	66	13	2	17	1.34
32250956--32250993	19	2.0	19	89	0	58	31	10	26	31	1.90
32266729--32266836	43	2.5	42	79	7	110	39	19	20	20	1.92
32269735--32269773	21	1.9	19	90	10	60	56	0	0	43	0.99
32276119--32276145	11	2.5	11	100	0	54	33	11	14	40	1.82
32278773--32279115	50	6.8	50	84	1	398	21	30	21	26	1.99
32280189--32280330	50	2.8	50	81	0	167	26	22	29	21	1.99
32283158--32283287	40	3.3	39	81	4	152	26	19	32	21	1.97
32283165--32283282	20	5.9	19	71	16	69	26	19	33	20	1.96
32285643--32285736	24	3.2	31	64	27	85	40	6	11	41	1.67
32285627--32285741	58	2.0	58	100	0	230	42	6	12	38	1.69
32291930--32292107	88	2.0	89	98	1	349	46	2	3	47	1.31
32293668--32293700	2	16.5	2	100	0	66	0	51	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32296448--32296510	31	2.0	31	100	0	126	26	9	19	44	1.81
32299165--32299207	18	2.3	18	88	11	61	20	0	27	51	1.48
32304527--32304638	42	2.7	42	81	4	120	48	18	16	16	1.82
32310561--32310621	30	2.0	30	93	0	104	29	22	14	32	1.94
32318893--32318933	22	2.0	22	85	9	59	60	2	19	17	1.46
32319611--32319643	18	1.9	18	88	11	52	45	6	0	48	1.27
32321577--32321650	31	2.4	31	82	12	91	40	0	6	52	1.28
32325602--32325643	20	2.1	20	95	0	75	16	0	7	76	1.00
32328499--32328524	13	2.0	13	100	0	52	30	7	15	46	1.74
32328554--32328595	19	2.2	19	83	8	50	28	21	9	40	1.84
32331305--32331344	21	2.0	19	85	9	53	70	2	12	15	1.28
32332690--32333660	89	10.9	89	97	0	1755	31	17	22	29	1.96
32334396--32334437	20	2.1	20	95	0	75	16	0	7	76	1.00
32335173--32335215	20	2.2	20	87	4	61	16	11	0	72	1.13
32339480--32339552	26	2.8	26	89	4	103	30	13	9	46	1.75
32340206--32340377	89	1.9	89	91	0	281	28	17	14	39	1.89
32342884--32342915	16	2.0	16	100	0	64	43	18	0	37	1.51
32350571--32350601	10	3.0	10	95	4	53	61	0	0	38	0.96
32351102--32351144	13	3.3	13	83	0	59	34	30	9	25	1.87
32352807--32352842	16	2.2	16	100	0	72	36	11	22	30	1.89
32355738--32355805	25	2.7	25	83	0	73	30	10	20	38	1.86
32355763--32355852	22	4.0	22	76	12	69	27	12	21	38	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32357844--32357868	13	1.9	13	100	0	50	28	24	24	24	2.00
32363601--32363647	20	2.3	20	85	3	58	14	6	10	68	1.38
32365255--32365291	17	2.2	17	95	0	65	48	0	2	48	1.15
32365262--32365297	17	2.1	17	89	0	54	50	2	5	41	1.40
32383045--32383089	3	15.0	3	100	0	90	33	0	0	66	0.92
32385139--32385195	27	2.3	25	78	21	66	66	0	1	31	1.02
32388611--32388646	9	4.0	9	86	13	56	36	0	0	63	0.94
32391117--32391150	3	11.3	3	87	0	50	29	0	5	64	1.17
32392305--32392344	14	2.6	16	88	11	57	42	25	5	27	1.75
32393338--32393362	13	1.9	13	100	0	50	56	28	0	16	1.41

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210