genome.fa.s3.2.7.7.80.10.50.1000.200.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr8
Parameters: 2 7 7 80 10 50 1000
Length:  70076365

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   

This is table  200  of  210  ( 25174 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66658557--66658620	26	2.5	26	100	0	128	23	28	29	18	1.98
66660243--66660295	21	2.5	21	81	0	70	30	24	28	16	1.97
66660243--66660303	21	2.8	21	78	9	61	32	24	26	16	1.96
66665462--66665511	24	2.1	24	84	0	64	66	8	0	26	1.19
66666014--66666052	18	2.2	18	85	0	51	74	2	2	20	1.06
66666202--66666265	27	2.4	26	86	2	92	42	3	4	50	1.39
66671123--66671169	24	2.0	24	84	16	62	31	0	17	51	1.46
66672545--66672621	30	2.6	31	87	6	106	37	11	18	32	1.87
66676078--66676128	17	3.1	16	81	10	50	19	0	11	68	1.20
66679029--66679080	9	5.3	9	79	18	52	75	3	0	21	0.97
66679291--66679341	21	2.4	22	80	3	59	41	5	15	37	1.72
66679526--66679561	18	1.9	19	88	5	56	63	8	0	27	1.23
66699457--66699481	2	12.5	2	100	0	50	48	0	0	52	1.00
66701321--66702399	131	8.3	125	79	9	531	23	23	22	30	1.99
66701331--66702432	44	25.4	44	76	9	652	23	24	22	30	1.99
66701458--66702396	87	10.8	87	76	6	796	23	24	22	29	1.99
66701459--66702181	175	4.2	176	83	3	930	24	24	22	29	1.99
66701458--66702432	131	7.5	131	83	4	1001	23	24	22	29	1.99
66704345--66704417	29	2.6	29	88	2	103	41	4	12	42	1.61
66704345--66704426	29	2.9	28	85	5	101	42	3	12	41	1.60
66707925--66708020	49	2.0	49	91	0	156	22	27	6	43	1.77
66709309--66709391	43	1.9	43	87	0	121	25	21	2	50	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66718610--66718643	3	11.3	3	100	0	68	67	0	32	0	0.91
66725379--66725407	15	1.9	15	100	0	58	31	0	0	68	0.89
66735374--66735407	15	2.3	15	90	5	52	67	5	0	26	1.13
66735605--66735646	22	1.9	22	90	0	66	33	0	33	33	1.58
66735618--66735676	30	2.0	30	96	0	109	32	0	35	32	1.58
66735596--66735697	52	2.0	51	84	5	134	33	0	31	34	1.65
66735647--66735717	22	3.2	22	88	7	99	36	1	26	35	1.66
66746916--66746966	13	3.9	13	84	0	75	27	9	23	39	1.86
66747982--66748013	7	4.6	7	96	0	55	53	15	31	0	1.43
66748012--66748056	21	2.1	21	83	0	54	40	17	31	11	1.85
66747960--66748065	52	2.0	52	82	7	126	43	17	32	6	1.75
66750569--66750614	2	22.5	2	91	4	65	50	6	0	43	1.28
66750788--66750829	2	20.5	2	90	4	57	50	7	0	42	1.30
66750528--66750961	215	2.0	216	97	1	825	38	16	3	41	1.64
66755745--66755802	24	2.3	26	88	8	84	53	1	5	39	1.33
66762975--66763094	61	2.0	62	84	1	161	44	15	2	37	1.61
66764153--66764236	31	2.8	30	78	3	87	39	5	9	45	1.61
66765230--66765273	20	2.2	20	84	8	54	45	15	4	34	1.67
66768838--66768879	20	2.1	20	91	8	68	45	4	11	38	1.62
66769924--66769993	19	3.6	19	79	9	79	20	18	25	35	1.95
66772039--66772079	21	2.0	21	85	9	57	51	0	4	43	1.23
66782400--66782766	183	2.0	184	99	0	727	31	13	14	40	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66782732--66782764	11	2.8	12	86	9	50	30	0	0	69	0.88
66782886--66782950	30	2.2	30	91	5	105	61	13	1	23	1.41
66783230--66783270	20	2.0	20	86	9	57	39	12	7	41	1.70
66783511--66783563	23	2.3	23	76	20	58	45	3	3	47	1.39
66783771--66783838	23	3.2	20	71	20	50	51	7	0	41	1.30
66797065--66797138	25	2.8	26	78	10	71	20	22	20	36	1.95
66798509--66798548	21	2.0	20	85	5	53	52	2	15	30	1.55
66801192--66801222	15	2.1	15	93	0	53	25	9	12	51	1.70
66807571--66807704	40	3.4	40	73	13	107	32	24	15	26	1.95
66808852--66808884	16	2.1	16	94	0	57	0	27	0	72	0.85
66815159--66815270	52	2.2	52	96	0	206	39	14	11	34	1.82
66828741--66828766	2	13.0	2	100	0	52	50	0	0	50	1.00
66833450--66833483	16	2.1	16	88	0	50	44	2	0	52	1.16
66836948--66837174	90	2.6	89	90	2	334	40	21	15	22	1.90
66839403--66839465	30	2.1	30	96	0	117	23	3	15	57	1.53
66839587--66839614	11	2.5	11	100	0	56	75	0	0	25	0.81
66839878--66839911	14	2.5	14	85	4	52	64	0	0	35	0.94
66842277--66842352	39	1.9	39	82	10	93	26	25	1	47	1.60
66845835--66846108	136	2.0	137	99	0	541	36	7	10	44	1.67
66847682--66847717	16	2.2	16	90	0	54	38	2	8	50	1.47
66850353--66850379	9	3.0	9	100	0	54	77	0	0	22	0.76
66854603--66854806	98	2.1	99	96	3	376	41	5	8	43	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66862175--66862220	20	2.3	20	81	7	58	36	17	8	36	1.81
66862422--66862458	2	18.0	2	94	5	65	48	0	2	48	1.15
66868094--66868153	29	2.1	28	87	3	84	45	26	11	16	1.82
66868094--66868148	26	2.0	27	83	13	69	47	27	9	16	1.76
66886240--66886264	1	25.0	1	100	0	50	0	0	0	100	0.00
66907659--66907922	89	3.0	88	87	2	366	38	18	10	32	1.85
66920131--66920257	9	13.4	9	65	26	50	31	3	2	62	1.26
66920131--66920216	39	2.2	37	76	13	93	30	4	3	61	1.33
66920131--66920263	10	13.8	10	69	21	54	31	3	2	62	1.25
66920231--66920274	19	2.3	19	84	0	52	34	2	2	61	1.21
66920367--66920596	91	2.5	91	85	2	277	28	9	22	40	1.84
66920873--66920994	9	13.7	9	66	20	51	31	3	1	63	1.20
66920935--66920981	10	4.8	10	78	5	51	31	0	2	65	1.04
66922672--66922922	95	2.7	95	79	11	240	33	11	17	36	1.86
66924531--66924716	50	3.7	50	88	0	273	25	24	30	19	1.98
66926147--66926330	19	9.9	19	70	11	112	46	22	4	26	1.72
66926147--66926258	39	2.9	38	82	6	127	45	21	5	27	1.73
66926289--66926314	13	2.0	13	100	0	52	53	23	0	23	1.46
66936638--66936804	83	2.0	84	98	1	327	32	7	16	43	1.76
66936648--66936825	83	2.1	83	89	4	261	34	10	12	42	1.77
66947364--66947406	19	2.2	19	84	16	52	53	0	4	41	1.21
66950911--66951076	78	2.1	79	97	2	318	45	8	2	43	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66953371--66953426	27	2.1	27	86	0	76	42	14	17	25	1.87
66971215--66971252	14	2.7	14	87	0	58	23	28	7	39	1.83
66971173--66971284	58	1.9	58	88	0	170	30	21	14	33	1.93
66971114--66971284	51	3.2	51	82	5	207	29	21	15	34	1.93
66976857--66977166	51	6.3	50	86	3	407	30	15	24	30	1.95
66976857--66977132	101	2.7	101	93	1	455	29	15	24	30	1.95
66977584--66977724	30	4.8	30	75	15	132	30	23	4	41	1.76
66978023--66978088	33	2.0	33	88	8	98	74	10	15	0	1.07
66978041--66978098	11	5.2	12	72	15	54	75	5	18	0	0.98
66978202--66978262	13	4.6	13	76	11	61	75	1	22	0	0.89
66978200--66978277	22	3.7	22	70	18	67	75	1	23	0	0.87
66978199--66978276	33	2.5	33	84	14	94	75	1	23	0	0.87
66978208--66978253	11	4.2	11	78	10	58	78	0	21	0	0.76
66978200--66978277	11	7.4	10	72	18	52	75	1	23	0	0.87
66978381--66978419	20	1.9	20	84	5	51	64	23	7	5	1.40
66979022--66979221	17	10.7	17	67	19	80	33	13	10	43	1.78
66979068--66979325	37	6.6	38	73	17	183	34	11	10	43	1.75
66979068--66979236	75	2.2	76	86	7	227	33	13	10	42	1.78
66979163--66979318	83	1.9	83	82	7	201	33	10	11	44	1.74
66979269--66979304	17	2.2	17	90	5	56	36	5	11	47	1.63
66979306--66979417	36	3.1	34	83	11	134	37	9	10	41	1.73
66984783--66984856	1	74.0	1	75	0	58	86	10	2	0	0.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66984785--66984844	9	6.7	9	86	5	86	86	13	0	0	0.57
66984783--66984850	23	2.8	24	82	13	86	86	11	1	0	0.63
66984783--66984850	25	2.7	25	88	2	91	86	11	1	0	0.63
66985707--66986692	77	12.9	75	82	7	675	27	16	19	36	1.93
66985957--66986689	77	9.5	77	85	5	896	27	16	20	35	1.94
66985726--66986689	154	6.3	153	84	7	909	27	16	20	35	1.94
66985808--66986689	231	3.8	228	82	7	900	27	16	20	35	1.94
66986888--66987013	30	4.2	29	81	11	148	30	22	5	41	1.76
66986895--66987011	59	2.0	60	86	5	166	32	23	4	40	1.74
66987260--66987294	11	3.1	11	87	4	52	65	14	20	0	1.26

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210