genome.fa.s3.2.7.7.80.10.50.1000.209.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr8
Parameters: 2 7 7 80 10 50 1000
Length:  70076365

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   

This is table  209  of  210  ( 25174 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69383534--69383620	42	2.0	43	84	2	113	32	13	21	32	1.93
69383880--69383952	34	2.1	35	84	2	94	30	16	10	42	1.82
69384636--69384700	22	3.0	22	95	0	112	10	21	26	41	1.86
69398589--69398634	23	2.0	23	91	0	74	28	50	2	19	1.60
69398913--69398985	21	3.6	21	76	16	64	34	42	2	20	1.67
69399076--69399109	15	2.2	16	94	5	61	47	32	0	20	1.51
69399397--69399550	41	3.8	41	79	3	159	31	22	22	24	1.99
69399397--69399550	82	1.9	82	82	2	193	31	22	22	24	1.99
69399636--69399730	39	2.4	39	82	6	113	21	16	22	40	1.92
69414927--69414997	3	23.7	3	100	0	142	66	0	0	33	0.92
69415403--69415436	16	2.1	16	94	0	59	41	2	5	50	1.42
69416463--69416520	3	19.3	3	100	0	116	67	0	0	32	0.91
69416924--69416975	22	2.4	22	83	6	61	15	9	50	25	1.74
69417769--69417837	29	2.4	29	79	13	74	42	5	11	40	1.65
69430824--69430964	74	1.9	74	95	0	255	45	4	6	43	1.51
69439915--69439951	18	2.1	18	89	0	56	75	0	2	21	0.92
69446064--69446224	50	3.2	49	77	10	166	26	23	26	22	2.00
69446060--69446298	49	4.8	50	78	4	189	27	21	27	23	1.99
69446060--69446249	99	1.9	100	81	3	231	26	22	27	23	1.99
69456016--69456337	27	12.3	26	79	9	298	41	21	17	19	1.90
69456273--69456311	19	2.1	19	95	0	69	38	28	17	15	1.91
69457550--69457722	29	6.0	29	74	14	160	35	14	27	22	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69457552--69457712	57	2.8	59	75	15	190	36	12	29	22	1.91
69457636--69457750	59	1.9	59	82	3	142	39	16	24	20	1.92
69459680--69459712	17	1.9	17	93	0	57	27	0	15	57	1.38
69461839--69461886	14	3.6	13	81	18	55	54	8	0	37	1.31
69463669--69463764	39	2.5	39	85	0	138	31	3	21	43	1.68
69469544--69469577	17	2.0	18	88	11	54	50	8	0	41	1.34
69471823--69471977	69	2.2	69	89	2	231	30	14	25	29	1.95
69471917--69472019	39	2.8	35	75	7	89	29	14	27	29	1.95
69481868--69482004	28	4.9	28	82	3	141	21	13	5	59	1.55
69483553--69483641	27	3.3	26	80	9	99	25	14	15	43	1.85
69483567--69483656	27	3.3	27	84	0	117	23	14	20	42	1.88
69488682--69488767	30	2.9	30	83	0	100	20	17	24	37	1.94
69494083--69494122	18	2.2	18	86	0	53	45	10	20	25	1.81
69499736--69499766	16	1.9	16	93	0	53	16	3	3	77	1.03
69507640--69507683	22	1.9	22	86	9	61	29	11	4	54	1.56
69517424--69517467	23	1.9	23	95	0	79	38	18	9	34	1.82
69517425--69517474	23	2.2	23	88	0	73	40	18	12	30	1.86
69520954--69520992	15	2.7	15	88	4	53	43	5	0	51	1.24
69521944--69522017	21	3.5	21	86	0	94	14	20	39	25	1.91
69525393--69525432	21	1.9	21	90	10	64	32	25	15	27	1.95
69528122--69528166	22	2.0	22	100	0	90	22	8	33	35	1.85
69534011--69534051	21	2.0	21	100	0	82	34	0	9	56	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69553571--69553619	24	2.0	24	100	0	98	36	8	20	34	1.82
69559044--69559095	22	2.3	22	86	3	68	36	23	11	28	1.90
69563064--69563125	29	2.1	29	100	0	124	56	20	3	19	1.56
69564129--69564172	22	2.0	22	100	0	88	40	22	18	18	1.91
69573622--69573755	46	2.8	48	86	3	191	33	17	20	28	1.95
69573622--69573784	46	3.6	45	83	7	179	31	20	19	28	1.97
69573830--69574213	44	8.7	43	72	12	208	32	19	20	27	1.97
69573879--69574069	89	2.2	88	80	4	206	30	18	22	28	1.97
69575843--69575887	20	2.3	19	85	11	56	31	8	2	57	1.41
69583803--69583846	17	2.5	17	82	10	54	31	15	2	50	1.57
69594592--69594622	2	15.5	2	100	0	62	51	0	0	48	1.00
69594529--69594729	99	2.0	99	99	0	393	39	7	8	44	1.64
69594691--69594721	2	15.5	2	100	0	62	51	0	0	48	1.00
69595203--69595291	41	2.2	41	93	2	153	21	22	5	50	1.69
69599573--69599854	41	6.9	41	76	9	218	36	24	17	20	1.94
69599591--69599856	82	3.2	80	81	6	266	36	24	17	20	1.94
69599564--69599854	121	2.4	122	83	4	338	37	24	17	20	1.94
69599831--69599884	25	2.2	25	89	0	81	40	25	14	18	1.89
69599791--69599933	66	2.2	66	85	2	198	39	22	15	23	1.92
69599710--69600016	148	2.1	146	83	7	381	37	23	17	21	1.94
69599886--69600097	82	2.6	82	85	0	280	36	21	19	22	1.95
69599856--69600083	123	1.9	123	86	0	330	37	21	17	22	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69599869--69600099	41	5.6	41	82	1	248	36	21	19	22	1.95
69603278--69603362	32	2.6	32	75	15	93	25	9	18	45	1.79
69603383--69603410	14	2.0	14	100	0	56	42	0	0	57	0.99
69607275--69607342	25	2.6	27	84	15	97	38	8	27	25	1.85
69619144--69619169	12	2.2	12	100	0	52	34	19	15	30	1.93
69623736--69623973	50	4.7	50	82	5	255	28	21	27	22	1.99
69631195--69631247	25	2.1	25	85	0	70	24	24	24	26	2.00
69637243--69637315	25	2.9	25	75	15	78	24	21	23	30	1.99
69637294--69637353	25	2.4	25	78	10	68	28	16	23	31	1.96
69637243--69637353	50	2.2	50	84	6	136	27	19	23	29	1.98
69637118--69637595	248	1.9	248	88	1	726	26	19	23	31	1.98
69637491--69637604	25	4.6	25	73	10	81	22	21	22	32	1.98
69637491--69637604	50	2.3	50	81	0	138	22	21	22	32	1.98
69637545--69637608	25	2.6	25	82	0	83	25	21	23	29	1.99
69638735--69638803	30	2.3	30	97	0	129	17	23	36	23	1.95
69660409--69660497	43	2.1	43	85	4	117	39	23	12	24	1.89
69660823--69660937	57	2.0	57	98	0	221	28	13	24	33	1.93
69663023--69663097	25	3.0	25	76	2	87	22	26	20	30	1.98
69662973--69663097	50	2.5	50	79	8	132	21	26	20	31	1.98
69666456--69666512	24	2.4	25	75	16	66	22	0	8	68	1.17
69667179--69667363	94	2.0	94	95	0	334	35	12	3	47	1.60
69670488--69671302	433	1.9	434	96	0	1524	33	16	13	36	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69672591--69672766	49	3.5	48	82	8	185	31	26	15	26	1.96
69680283--69680311	10	2.9	10	100	0	58	37	10	0	51	1.36
69681563--69681616	25	2.3	25	75	18	62	53	7	3	35	1.47
69682230--69682266	8	4.5	8	96	3	65	40	0	0	59	0.97
69689893--69689923	15	2.1	15	93	0	53	38	3	32	25	1.72
69694233--69694263	15	2.1	15	100	0	62	38	6	32	22	1.80
69696422--69696474	26	2.1	24	93	6	88	54	5	7	32	1.52
69698254--69698296	16	2.5	16	85	11	50	74	0	13	11	1.07
69698370--69698399	12	2.5	12	94	0	51	56	0	26	16	1.40
69698543--69698645	26	4.0	26	77	8	86	43	9	15	31	1.79
69707286--69707371	27	3.2	27	94	0	136	18	16	22	43	1.88
69707259--69707371	54	2.1	53	81	6	129	21	16	20	41	1.90
69713296--69713475	62	2.9	61	78	8	186	43	15	4	36	1.67
69713781--69713817	10	3.7	10	100	0	74	62	18	10	8	1.52
69719049--69719220	27	6.4	27	89	2	265	36	13	16	34	1.87
69719049--69719252	54	3.8	53	83	6	248	35	14	17	32	1.89
69719049--69719252	81	2.5	81	82	4	250	35	14	17	32	1.89
69719351--69719404	24	2.3	23	87	6	81	27	31	25	14	1.95
69725528--69725557	6	5.0	6	100	0	60	50	16	0	33	1.46
69735719--69735908	51	3.8	49	81	4	213	24	15	26	32	1.96
69735723--69735906	100	1.8	101	88	4	282	25	16	26	32	1.96
69735828--69735908	26	3.2	26	62	22	62	24	14	27	33	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69735910--69736001	45	2.0	45	91	0	148	26	17	23	32	1.97
69746543--69746663	61	2.0	61	88	0	179	35	17	17	29	1.93
69787016--69787200	37	5.0	37	86	3	239	28	14	17	38	1.90
69787001--69787200	73	2.7	74	85	3	242	29	14	18	38	1.90
69802014--69802065	27	1.9	27	96	0	95	25	34	25	15	1.95
69801937--69802243	103	3.0	103	89	1	465	32	27	19	20	1.96
69802087--69802163	27	2.5	32	84	12	92	33	29	19	16	1.94
69801937--69802243	102	3.0	103	88	2	458	32	27	19	20	1.96
69809509--69809763	33	7.5	33	63	23	93	32	25	21	21	1.98
69809540--69809592	27	2.0	27	88	0	79	26	28	24	20	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210