genome.fa.s3.2.7.7.80.10.50.1000.152.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr8
Parameters: 2 7 7 80 10 50 1000
Length:  70076365

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   

This is table  152  of  210  ( 25174 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50958315--50958415	52	1.9	52	88	4	150	19	34	1	43	1.63
50958584--50958623	18	2.2	19	86	8	57	35	5	0	60	1.19
50962519--50962568	26	1.9	26	88	8	75	34	14	10	42	1.78
50967116--50967166	26	1.9	27	96	4	95	49	17	11	21	1.79
50968426--50968488	12	5.0	12	90	9	99	57	19	0	23	1.41
50968426--50968488	26	2.5	24	92	7	99	57	19	0	23	1.41
50983365--50983425	21	2.9	21	77	0	50	65	3	9	21	1.37
50983940--50983984	22	2.0	22	87	8	65	53	11	0	35	1.37
50983928--50984228	146	2.2	139	86	7	405	43	9	3	42	1.55
50986437--50986470	6	5.7	6	96	0	59	17	26	0	55	1.42
50991196--50991272	38	2.0	38	94	0	136	9	16	16	57	1.64
50991248--50991416	42	4.0	42	87	2	241	15	20	15	47	1.83
50991248--50991445	21	9.4	21	69	4	130	16	20	15	46	1.83
50991248--50991440	42	4.6	42	84	2	226	16	20	16	47	1.82
50995881--50995926	19	2.4	19	82	7	58	6	19	0	73	1.04
51000529--51000567	20	2.0	20	89	0	60	41	0	28	30	1.57
51002101--51002125	12	2.1	12	100	0	50	48	0	0	52	1.00
51006358--51006432	34	2.3	32	83	4	87	13	16	1	69	1.26
51009986--51010016	12	2.6	12	94	0	53	6	22	41	29	1.78
51015466--51015544	33	2.4	33	93	0	131	15	11	49	24	1.77
51017968--51018033	13	5.1	13	87	7	89	37	28	6	27	1.80
51022210--51022263	23	2.2	24	80	9	65	18	14	25	40	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51024428--51024537	55	2.0	55	98	0	211	39	11	21	27	1.88
51053638--51053684	22	2.1	22	96	0	85	36	6	4	53	1.46
51053645--51053695	22	2.3	22	90	6	77	37	5	1	54	1.36
51054670--51054714	19	2.4	19	84	0	63	46	0	2	51	1.13
51054956--51054990	18	2.0	17	88	5	52	48	0	25	25	1.51
51056526--51056569	9	4.9	9	85	0	52	40	0	36	22	1.54
51056744--51056792	26	1.9	25	83	4	62	8	14	26	51	1.70
51061887--51061924	18	2.1	18	95	0	67	7	57	23	10	1.58
51063591--51063697	40	2.7	40	91	0	169	50	28	11	10	1.70
51063591--51063723	40	3.3	39	87	2	158	48	28	12	11	1.75
51071676--51071727	22	2.4	22	84	9	70	21	1	1	75	1.00
51080329--51080417	39	2.3	39	82	5	117	19	3	26	50	1.63
51080396--51080425	13	2.3	13	94	0	51	16	3	40	40	1.65
51081662--51081735	37	2.0	37	97	0	139	20	18	16	44	1.87
51088509--51088573	30	2.2	30	94	0	112	56	15	4	23	1.57
51088603--51088645	22	2.0	22	85	0	59	58	11	11	18	1.63
51088610--51088650	11	3.7	11	80	0	55	56	9	14	19	1.66
51089903--51089945	22	2.0	22	90	0	68	9	13	27	48	1.73
51090036--51090328	42	7.0	41	80	9	283	31	20	21	26	1.98
51090036--51090328	127	2.3	124	80	10	301	31	20	21	26	1.98
51095203--51095251	22	2.2	22	96	0	89	34	30	4	30	1.76
51095910--51096400	164	3.0	164	92	1	770	28	21	18	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51096861--51096938	32	2.4	32	80	2	93	32	11	7	48	1.68
51114272--51114344	37	2.0	37	81	5	85	42	19	13	24	1.87
51121693--51121808	57	2.0	57	96	0	214	29	17	23	30	1.97
51122457--51122516	29	2.1	28	84	9	77	46	25	11	16	1.81
51152440--51152568	20	6.4	20	72	6	73	34	20	33	11	1.89
51154848--51155097	43	5.8	43	87	1	308	28	32	18	20	1.96
51154848--51155097	129	1.9	129	85	4	344	28	32	18	20	1.96
51156937--51156997	23	2.7	23	89	5	88	34	26	8	31	1.86
51157333--51157416	39	2.1	39	86	4	114	51	7	11	29	1.65
51161035--51161078	21	2.1	21	87	8	63	38	40	0	20	1.53
51161044--51161086	20	2.2	20	87	8	61	39	39	0	20	1.53
51161078--51161120	15	2.9	15	86	3	61	39	27	0	32	1.57
51161255--51161289	15	2.4	15	85	4	54	40	40	0	20	1.52
51161549--51161719	91	1.9	91	92	0	288	28	25	21	25	1.99
51162194--51162375	91	2.0	91	91	2	294	27	24	20	27	1.99
51162459--51162731	114	2.4	114	93	1	458	23	25	23	27	2.00
51182073--51182107	17	2.1	16	89	5	52	22	25	14	37	1.92
51198191--51198241	24	2.3	23	83	12	63	35	5	7	50	1.55
51198189--51198241	23	2.2	24	83	9	65	35	5	7	50	1.54
51202672--51202729	30	1.9	30	89	6	91	68	8	8	13	1.37
51202712--51202755	15	2.7	16	89	10	63	77	0	9	13	0.99
51204006--51204343	44	7.7	44	87	2	466	29	20	27	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51204006--51204343	88	3.9	88	89	2	520	29	20	27	22	1.99
51206015--51206084	24	2.9	24	76	18	74	32	7	10	50	1.63
51215400--51215430	14	2.1	15	94	5	55	77	12	0	9	0.99
51217789--51217855	26	2.6	26	85	0	89	20	25	23	29	1.99
51219354--51219407	13	4.1	13	78	4	63	38	14	11	35	1.82
51219343--51219400	27	2.1	27	93	0	98	37	15	13	32	1.87
51221267--51221296	15	1.9	16	93	6	53	70	0	23	6	1.11
51221261--51221350	36	2.6	34	75	21	91	60	1	27	11	1.38
51228255--51228288	17	2.0	17	100	0	68	35	23	17	23	1.95
51228257--51228294	17	2.2	17	90	0	58	44	18	13	23	1.85
51230486--51230515	16	1.9	15	93	6	51	13	36	3	46	1.60
51232353--51232394	12	3.5	12	84	9	50	76	0	4	19	0.96
51232442--51232512	25	2.8	25	81	12	67	71	4	2	21	1.15
51232450--51232502	16	3.4	16	76	23	51	73	1	1	22	1.03
51233099--51233137	13	3.0	13	84	0	51	23	38	20	17	1.93
51233205--51233309	45	2.4	45	85	1	131	10	25	26	37	1.88
51237013--51237069	30	1.9	30	89	7	89	24	29	29	15	1.96
51252098--51252188	41	2.2	42	88	7	134	31	3	14	50	1.59
51260018--51260052	17	2.1	16	89	5	52	22	25	14	37	1.92
51265154--51265262	48	2.3	48	93	0	191	22	30	13	33	1.93
51265442--51265492	25	2.0	25	96	0	93	27	23	11	37	1.90
51274831--51274856	11	2.4	11	100	0	52	7	15	7	69	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51275702--51275733	15	2.1	16	94	5	57	65	9	12	12	1.47
51281376--51281594	81	2.7	82	92	1	359	30	20	25	24	1.98
51281376--51281601	122	1.8	123	91	0	373	30	20	25	23	1.99
51281376--51281601	41	5.5	41	93	1	364	30	20	25	23	1.99
51281653--51281717	33	2.0	33	84	0	85	35	4	16	43	1.69
51289408--51289453	24	1.9	24	82	8	58	21	23	0	54	1.45
51290373--51290417	23	2.0	23	91	8	74	31	8	20	40	1.83
51293441--51293553	20	5.7	19	69	8	64	35	17	34	12	1.88
51293320--51293557	60	4.0	60	84	2	280	37	16	31	14	1.89
51293319--51293544	121	1.9	121	85	3	321	37	16	31	14	1.88
51293368--51293585	60	3.6	60	85	4	181	37	15	31	16	1.90
51299150--51299303	61	2.5	60	80	10	188	39	20	25	13	1.90
51325033--51325067	17	2.1	17	88	0	52	2	17	20	60	1.49
51328460--51328510	23	2.2	23	100	0	102	21	19	29	29	1.98
51331537--51331590	28	1.9	28	88	0	81	18	31	37	12	1.89
51333535--51333571	19	1.9	19	94	0	65	35	2	16	45	1.61
51333600--51333692	41	2.3	42	90	3	145	32	2	12	52	1.51
51337692--51337727	17	2.1	17	94	0	63	55	0	13	30	1.39
51347818--51349472	827	2.0	827	99	0	3247	36	12	16	34	1.87
51350283--51350376	41	2.3	41	90	3	145	32	3	13	50	1.58
51358153--51358192	19	2.2	18	95	4	71	42	15	2	40	1.60
51366819--51366913	28	3.6	25	70	20	68	60	5	4	30	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51366819--51366870	26	2.0	27	88	3	79	61	3	1	32	1.25
51371927--51371961	17	2.1	16	94	5	61	25	25	14	34	1.94
51381810--51381908	27	3.7	27	81	0	108	25	19	20	35	1.95
51381908--51381984	27	2.9	26	84	9	102	36	7	20	35	1.82
51381918--51382221	27	11.3	27	80	5	294	29	6	22	41	1.80
51381935--51382176	109	2.2	108	87	2	333	30	6	21	42	1.78
51381903--51382258	81	4.4	78	77	8	282	30	7	20	40	1.80
51382213--51382267	27	2.0	27	92	0	92	36	9	16	38	1.80
51386248--51386327	32	2.5	32	78	15	85	41	20	17	21	1.91
51386516--51386846	27	12.3	27	81	2	299	27	7	23	41	1.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210