genome.fa.s3.2.7.7.80.10.50.1000.164.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr8
Parameters: 2 7 7 80 10 50 1000
Length:  70076365

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   

This is table  164  of  210  ( 25174 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55109487--55109516	2	15.0	2	92	0	51	46	0	53	0	1.00
55118005--55118062	22	2.7	21	84	7	71	46	13	20	18	1.83
55121082--55121134	19	2.8	19	79	0	61	39	32	3	24	1.73
55124683--55124709	13	2.1	13	100	0	54	14	14	33	37	1.88
55126707--55126855	81	1.8	81	91	2	246	32	17	8	42	1.78
55127082--55127149	14	5.2	13	76	20	54	50	2	1	45	1.26
55131164--55131203	20	2.1	20	86	9	57	17	2	15	65	1.39
55138494--55138564	10	6.4	10	77	20	70	45	9	2	42	1.52
55143833--55143982	54	2.8	54	84	5	187	36	0	34	28	1.63
55143975--55144012	19	2.0	19	85	10	51	39	0	34	26	1.57
55143849--55144145	126	2.3	127	83	9	367	39	0	33	26	1.62
55144041--55144178	75	1.9	75	87	4	208	39	0	31	28	1.62
55148014--55148514	23	21.6	23	72	15	142	40	17	13	28	1.88
55147977--55148383	93	4.4	93	88	4	565	40	17	14	27	1.89
55147977--55148383	186	2.2	184	90	4	622	40	17	14	27	1.89
55148118--55148514	209	1.9	208	93	4	683	39	17	14	28	1.88
55148002--55148476	116	4.1	115	80	10	459	40	17	14	28	1.88
55147999--55148499	93	5.4	93	86	5	517	40	17	14	28	1.88
55149164--55149289	28	4.5	28	89	2	182	30	25	12	31	1.93
55163955--55164115	41	3.9	41	90	3	234	29	19	21	29	1.98
55164311--55164335	2	12.5	2	100	0	50	48	0	0	52	1.00
55167638--55167697	27	2.3	27	94	2	104	41	5	0	53	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55168853--55168916	28	2.3	28	94	0	110	51	0	7	40	1.31
55169470--55169515	22	2.0	23	87	4	67	58	0	10	30	1.32
55170073--55170131	20	3.0	20	92	0	91	42	20	13	23	1.88
55170181--55170230	21	2.5	20	80	3	64	24	12	34	30	1.91
55173845--55173899	16	3.4	16	84	0	74	41	3	23	30	1.72
55175066--55175100	12	2.9	12	95	0	61	11	17	48	22	1.79
55176304--55176469	59	2.8	58	81	8	167	51	2	3	42	1.32
55177488--55177541	27	2.0	27	96	0	99	57	3	9	29	1.47
55180718--55180921	102	1.9	102	83	9	259	30	20	16	32	1.94
55185813--55185857	23	2.0	23	95	0	81	37	8	28	24	1.86
55188399--55188525	54	2.3	54	90	1	191	36	14	24	25	1.93
55188399--55188529	27	4.8	27	82	0	145	36	14	24	24	1.93
55190031--55190055	7	3.6	7	100	0	50	72	0	0	28	0.86
55192635--55192669	3	11.7	3	100	0	70	68	0	0	31	0.90
55193325--55193777	44	10.5	43	72	13	238	26	23	20	28	1.99
55193374--55193770	214	1.8	215	88	3	600	27	23	20	28	1.99
55193788--55194267	88	5.5	88	89	1	712	31	24	12	31	1.93
55193786--55194275	44	11.1	44	82	1	570	30	24	12	31	1.93
55210310--55210354	23	1.9	24	90	4	74	71	2	6	20	1.20
55212043--55212084	20	2.2	19	83	12	50	61	2	19	16	1.44
55217588--55217663	9	8.4	9	91	5	102	39	23	10	26	1.87
55217766--55217809	18	2.4	18	88	0	61	13	2	43	40	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55219882--55219921	20	2.0	20	90	0	62	15	7	5	72	1.24
55219884--55219928	20	2.2	20	84	0	54	17	4	6	71	1.25
55222910--55222964	27	2.0	27	96	0	101	23	12	14	49	1.78
55223124--55223380	43	6.0	43	81	0	262	42	20	16	20	1.89
55226252--55226291	20	2.0	21	90	5	64	70	2	10	17	1.27
55228285--55228328	5	9.0	5	87	5	54	34	2	0	63	1.07
55228590--55228630	22	2.0	20	85	9	55	48	2	0	48	1.14
55229181--55229237	30	1.9	30	92	7	98	35	0	15	49	1.45
55230548--55230616	27	2.6	27	93	4	113	40	10	1	47	1.46
55230616--55230649	8	4.1	8	88	3	50	88	8	0	2	0.62
55230687--55230753	27	2.5	27	90	0	98	19	28	35	16	1.93
55230800--55230949	18	8.4	17	73	18	87	67	0	31	0	1.01
55230802--55230873	10	6.6	10	73	17	54	68	0	31	0	0.90
55230802--55230903	24	4.3	23	71	11	73	66	0	32	0	0.98
55230805--55230878	14	5.1	13	71	25	51	68	0	31	0	0.89
55230820--55230965	38	4.1	36	80	9	149	66	0	32	0	1.02
55230822--55230922	10	10.5	10	69	16	61	66	0	31	0	1.05
55230909--55230976	31	2.3	30	80	16	79	72	0	27	0	0.85
55232833--55232869	17	2.2	17	95	0	65	27	16	10	45	1.80
55236761--55236795	3	11.7	3	87	0	52	62	5	0	31	1.18
55237119--55237172	27	2.0	27	100	0	108	33	0	11	55	1.35
55237125--55237195	27	2.6	27	84	2	79	40	0	11	47	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55247825--55247885	16	3.8	16	72	10	61	54	0	0	45	1.00
55247821--55247885	18	3.7	17	72	12	60	53	0	0	46	1.00
55251239--55251332	35	2.7	35	88	1	125	13	12	26	46	1.79
55255288--55255681	23	16.6	23	71	12	208	42	17	13	26	1.87
55255300--55255671	71	5.2	71	84	4	419	43	17	13	25	1.86
55255339--55255674	71	4.7	71	84	4	426	43	17	14	25	1.86
55255597--55255691	48	2.0	48	91	0	154	44	15	16	23	1.86
55255616--55255690	23	3.2	23	74	7	78	42	16	17	24	1.88
55256404--55256473	28	2.5	28	85	0	95	30	24	12	32	1.93
55257324--55257360	16	2.4	16	86	8	51	29	5	0	64	1.15
55271945--55271993	22	2.2	21	89	7	71	59	0	0	40	0.98
55271945--55271993	21	2.2	22	85	7	64	59	0	0	40	0.98
55272658--55272701	22	2.0	22	91	8	72	45	9	2	43	1.48
55274358--55274400	24	1.9	22	81	13	52	27	2	2	67	1.15
55276829--55277079	68	3.7	68	80	0	259	35	17	20	25	1.95
55276828--55277144	136	2.3	136	83	3	377	36	17	20	25	1.94
55276829--55277127	68	4.4	68	80	0	247	36	17	20	25	1.94
55282592--55282735	41	3.5	41	86	0	198	20	21	23	34	1.96
55282578--55282734	82	1.9	82	88	0	233	20	22	23	33	1.97
55283175--55283215	21	2.0	21	85	9	57	31	4	19	43	1.72
55286698--55286754	20	2.7	22	71	20	59	61	8	10	19	1.54
55287124--55287167	3	14.7	3	100	0	88	68	0	0	31	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55288312--55288340	15	1.9	15	100	0	58	10	0	41	48	1.37
55288314--55288347	15	2.3	15	89	0	50	11	0	47	41	1.40
55290686--55290752	27	2.5	27	87	0	98	20	13	41	23	1.88
55293590--55293631	21	2.0	22	81	13	52	35	2	4	57	1.33
55295473--55295523	26	2.0	26	84	7	68	25	1	5	66	1.24
55295831--55295886	21	2.6	21	79	17	62	73	3	1	21	1.08
55298060--55298096	16	2.3	16	95	0	65	40	5	32	21	1.76
55298078--55298171	44	2.1	45	88	5	147	34	3	28	34	1.73
55299409--55299438	6	5.0	6	100	0	60	66	16	0	16	1.25
55301456--55301493	3	12.7	3	88	0	58	31	0	2	65	1.06
55301674--55301717	23	1.9	23	90	0	70	34	4	4	56	1.40
55302811--55302846	3	12.0	3	93	0	63	63	0	2	33	1.08
55316332--55316363	15	2.1	15	94	0	55	68	9	6	15	1.36
55316839--55316925	45	1.9	46	80	2	104	32	21	8	37	1.83
55321021--55321066	24	2.0	24	87	8	69	28	15	23	32	1.95
55323780--55323805	9	2.9	9	100	0	52	53	0	0	46	1.00
55327740--55327764	4	6.2	4	100	0	50	52	0	24	24	1.48
55341886--55341934	20	2.5	20	81	15	66	12	24	6	57	1.58
55345987--55346052	33	2.0	33	96	0	123	37	13	9	39	1.77
55348931--55348976	18	2.5	19	89	10	69	45	0	2	52	1.13
55349099--55349154	23	2.4	23	82	5	60	42	5	3	48	1.43
55354873--55354915	5	8.2	5	85	10	59	4	16	0	79	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55354875--55354921	15	2.9	17	87	9	64	8	12	0	78	0.95
55355006--55355116	20	6.2	18	71	16	54	36	8	0	54	1.30
55354933--55355038	33	3.1	32	69	15	95	37	6	0	55	1.26
55354912--55355281	70	5.2	70	86	4	512	33	8	0	57	1.32
55354908--55355281	140	2.6	140	89	5	574	33	8	0	57	1.32
55355299--55355407	56	2.0	56	87	1	157	29	22	14	33	1.94
55355299--55355429	56	2.4	54	79	8	129	29	23	15	31	1.95
55365616--55365664	3	16.3	3	86	0	62	24	0	8	67	1.18
55371343--55371379	18	2.1	18	100	0	74	56	0	5	37	1.22
55375799--55375843	22	2.0	23	82	4	56	62	2	2	33	1.20

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210