genome.fa.s3.2.7.7.80.10.50.1000.160.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr8
Parameters: 2 7 7 80 10 50 1000
Length:  70076365

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   

This is table  160  of  210  ( 25174 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53643672--53643784	44	2.6	44	81	2	120	28	19	21	30	1.97
53643854--53644348	129	3.8	127	74	5	425	26	23	20	29	1.99
53644097--53644477	44	8.7	44	79	7	328	24	24	21	29	1.99
53643985--53644477	261	1.9	261	93	1	862	25	24	20	29	1.99
53644141--53644545	217	1.9	218	95	1	733	24	24	20	30	1.99
53644524--53645059	88	6.1	88	83	1	653	22	25	25	26	2.00
53644558--53645045	44	11.1	44	65	9	170	22	24	26	26	2.00
53644528--53645059	176	3.0	176	88	0	760	22	25	25	26	2.00
53644524--53645059	264	2.0	264	86	1	734	22	25	25	26	2.00
53647259--53647306	19	2.6	19	80	12	55	2	18	0	79	0.84
53647265--53647305	18	2.3	18	87	8	57	0	21	0	78	0.76
53647264--53647307	20	2.4	17	82	17	52	0	20	0	79	0.73
53655509--53655556	10	5.0	10	85	7	55	27	35	0	37	1.57
53659067--53659104	19	2.0	19	100	0	76	26	21	21	31	1.98
53664742--53664780	19	2.0	19	90	5	60	53	28	0	17	1.44
53667016--53667044	13	2.1	14	93	6	51	65	6	0	27	1.18
53667082--53667145	29	2.2	29	88	0	92	31	26	1	40	1.65
53670385--53670420	18	2.1	17	89	5	54	66	0	33	0	0.92
53676256--53676821	282	2.0	283	99	0	1116	39	12	4	43	1.62
53683550--53683668	40	2.8	43	78	14	124	31	26	18	24	1.98
53685080--53685110	16	1.9	16	93	0	53	41	9	0	48	1.36
53685665--53685692	2	14.0	2	100	0	56	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53688310--53688405	31	3.1	31	92	3	156	44	12	10	32	1.76
53694951--53694984	16	2.1	16	88	5	50	8	0	14	76	1.01
53700495--53700538	15	2.9	15	80	16	54	31	0	6	61	1.22
53702752--53702784	17	1.9	17	93	0	57	21	12	9	57	1.62
53707505--53707597	49	2.0	47	85	8	127	29	11	9	49	1.71
53708919--53708976	28	2.1	27	93	3	98	31	25	22	20	1.98
53708928--53708984	28	2.0	28	90	6	89	29	24	22	22	1.99
53709095--53709163	26	2.7	26	93	0	120	40	26	17	15	1.89
53709330--53709496	81	2.1	80	88	3	246	20	16	17	44	1.86
53709330--53709496	27	6.2	27	80	8	189	20	16	17	44	1.86
53712180--53712243	28	2.3	28	100	0	128	32	3	28	35	1.73
53716004--53716045	4	10.5	4	100	0	84	26	0	23	50	1.50
53733465--53734304	434	2.0	426	86	4	1185	36	16	12	34	1.86
53739249--53739303	28	2.0	26	86	6	74	21	10	9	58	1.60
53739251--53739309	28	2.1	28	81	9	68	27	10	11	50	1.71
53743396--53743458	3	20.7	3	84	9	83	65	0	31	3	1.09
53749584--53749648	27	2.4	27	82	5	78	29	26	18	26	1.98
53749609--53749710	27	3.8	27	84	2	125	26	22	16	34	1.95
53750264--53750315	26	2.0	26	100	0	104	50	11	19	19	1.77
53770639--53770725	41	2.2	40	89	2	129	24	18	26	31	1.98
53779793--53779841	23	2.1	24	84	3	64	40	18	2	38	1.62
53781656--53781685	13	2.3	13	94	0	51	50	6	13	30	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53784090--53784174	45	1.9	45	85	7	120	35	28	7	29	1.83
53784154--53784186	16	2.1	16	100	0	66	21	36	6	36	1.78
53786607--53786974	114	3.2	111	81	5	389	24	24	25	26	2.00
53787588--53787650	15	4.5	14	75	15	58	22	1	36	39	1.64
53787897--53787985	14	6.5	13	71	12	54	11	1	40	47	1.47
53788367--53789228	231	3.7	231	99	0	1697	28	18	19	33	1.96
53789401--53789449	18	2.5	21	80	9	59	61	10	2	26	1.39
53789988--53790098	7	15.9	7	77	3	80	9	0	45	45	1.41
53791125--53791161	19	1.9	19	88	0	56	29	40	2	27	1.70
53793186--53793269	30	2.8	30	73	7	89	45	9	4	40	1.58
53793353--53793442	37	2.4	37	98	0	171	50	10	4	35	1.56
53795254--53795374	37	3.4	37	88	11	207	51	6	3	38	1.45
53796595--53796645	21	2.4	21	86	0	66	35	13	47	3	1.62
53796555--53796731	87	2.0	87	90	0	273	38	16	31	12	1.87
53796682--53796730	21	2.3	21	89	0	71	34	18	38	8	1.80
53796566--53796759	87	2.2	87	85	1	237	39	18	30	11	1.87
53797071--53797209	43	3.3	43	91	1	226	29	18	26	25	1.98
53808464--53808490	2	13.5	2	100	0	54	48	0	0	51	1.00
53811012--53811042	6	5.2	6	96	0	53	45	32	0	22	1.53
53811014--53811065	6	8.5	6	91	2	50	34	34	1	28	1.69
53811680--53811866	51	3.7	49	81	7	216	23	16	29	30	1.96
53811684--53811870	101	1.8	101	90	5	306	22	16	29	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53811790--53811870	26	3.2	26	64	22	71	22	14	30	32	1.94
53829538--53829630	48	1.9	49	95	2	170	26	26	4	41	1.74
53831038--53831103	19	3.5	18	78	15	62	25	25	1	46	1.61
53831059--53831106	18	2.5	19	87	12	64	22	27	0	50	1.50
53838750--53838962	105	2.0	105	98	1	410	47	2	5	44	1.41
53842463--53842636	46	3.8	46	75	6	145	29	17	23	29	1.97
53847022--53847087	33	2.0	33	96	0	123	28	15	19	36	1.92
53847224--53847256	13	2.5	13	95	5	57	84	0	15	0	0.61
53850208--53850242	12	2.9	12	82	0	52	17	0	31	51	1.45
53859745--53859784	11	3.9	11	81	15	50	20	7	7	65	1.43
53863753--53863881	48	2.7	48	86	4	179	28	20	25	25	1.99
53863766--53863921	48	3.2	48	87	1	152	27	19	27	25	1.99
53867796--53867903	47	2.2	50	79	11	125	35	26	13	24	1.93
53868343--53868471	46	2.8	46	92	0	204	30	27	6	34	1.83
53869716--53869763	17	2.9	17	87	3	71	50	20	2	27	1.60
53882310--53882366	26	2.2	26	84	6	71	17	24	24	33	1.96
53898645--53898697	26	2.0	26	81	0	61	35	20	24	18	1.95
53898691--53898755	22	3.0	22	74	0	67	44	16	20	18	1.87
53898745--53898951	32	6.5	32	81	10	151	37	22	19	20	1.94
53898773--53898949	64	2.8	64	81	5	198	37	23	19	19	1.94
53899238--53899472	27	8.7	27	83	5	210	23	20	20	35	1.96
53901979--53902017	15	2.7	15	84	4	53	20	7	2	69	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53902494--53902572	33	2.4	33	87	4	106	45	10	22	21	1.81
53902538--53902628	45	2.0	45	93	0	155	50	10	20	17	1.76
53904422--53904461	16	2.5	17	92	8	66	77	0	5	17	0.94
53910833--53910900	28	2.5	28	79	11	72	72	5	1	20	1.14
53912517--53912663	74	2.0	74	83	0	186	31	14	20	32	1.93
53916277--53916302	12	2.2	12	100	0	52	30	0	7	61	1.24
53918675--53918760	6	14.3	6	97	0	163	68	0	31	0	0.90
53921607--53921664	15	3.9	15	93	0	80	37	1	36	24	1.66
53921607--53921664	5	11.6	5	79	0	62	37	1	36	24	1.66
53923231--53923269	17	2.3	17	86	0	51	17	12	30	38	1.88
53955430--53955568	58	2.3	60	84	8	169	48	5	2	43	1.39
53955452--53955650	61	3.2	59	78	14	195	51	4	2	42	1.32
53955541--53955591	12	4.2	12	75	9	59	54	0	0	45	0.99
53955543--53955636	17	5.6	17	74	18	74	53	2	1	43	1.19
53955600--53955677	38	2.0	38	80	9	86	47	5	3	43	1.43
53976878--53977050	43	4.0	43	100	0	346	32	13	18	34	1.90
53986190--53986227	11	3.3	12	82	14	53	63	0	0	36	0.95
53998698--53998858	72	2.2	72	85	9	213	39	1	34	24	1.64
54003249--54003415	83	2.0	82	94	1	289	35	18	20	25	1.95
54009779--54009825	22	2.1	22	84	0	58	46	17	17	19	1.84
54009945--54010019	32	2.3	32	90	0	114	37	24	20	18	1.94
54010022--54010075	26	2.1	26	85	0	72	35	24	22	18	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54010063--54010126	27	2.4	27	82	12	71	32	21	25	20	1.97
54010195--54010263	24	2.9	23	78	6	75	47	26	8	17	1.76
54010294--54010386	27	3.5	27	85	5	120	24	23	18	33	1.97
54010374--54010478	27	3.9	27	81	8	117	20	19	19	40	1.91
54010346--54010485	27	5.2	27	75	11	92	22	19	20	38	1.93
54010353--54010485	53	2.5	53	77	8	128	21	19	20	38	1.94
54012106--54012306	106	1.9	106	91	0	330	30	17	19	31	1.96
54012547--54012580	12	2.9	12	91	4	52	61	8	5	23	1.47
54013985--54014021	15	2.6	15	87	8	51	0	13	21	64	1.27
54017166--54017256	35	2.6	35	81	6	112	28	15	15	40	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210