genome.fa.s3.2.7.7.80.10.50.1000.210.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr8
Parameters: 2 7 7 80 10 50 1000
Length:  70076365

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   

This is table  210  of  210  ( 25174 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69809464--69809793	103	3.2	102	85	4	452	31	26	20	21	1.98
69809464--69809793	101	3.2	102	86	2	457	31	26	20	21	1.98
69815503--69815597	37	2.6	37	83	3	111	40	5	3	51	1.40
69815541--69815656	61	1.9	60	85	3	153	37	4	6	51	1.46
69818673--69818706	17	2.0	17	94	0	59	58	8	11	20	1.59
69819181--69819223	21	2.0	21	86	8	61	25	44	2	27	1.66
69821381--69821442	31	2.0	31	93	6	108	19	27	14	38	1.90
69825324--69825372	21	2.3	20	77	16	55	16	16	28	38	1.90
69825337--69825380	21	2.1	21	86	0	61	13	11	34	40	1.81
69825368--69825407	21	1.9	21	85	10	55	17	7	27	47	1.74
69836815--69836845	9	3.4	9	90	0	53	25	12	22	38	1.90
69836899--69836935	9	4.1	9	92	0	65	45	13	10	29	1.77
69844679--69844861	50	3.6	50	78	4	188	30	25	17	26	1.97
69849299--69849342	20	2.2	20	84	8	54	72	4	4	18	1.19
69849348--69849377	14	2.1	15	93	6	53	70	0	3	26	1.03
69849491--69849536	19	2.3	20	81	3	58	60	10	2	26	1.41
69863932--69863979	23	2.1	23	100	0	96	50	0	20	29	1.49
69867553--69867692	69	2.0	70	98	1	273	32	18	10	38	1.84
69870284--69870332	24	2.0	24	92	0	80	42	14	2	40	1.57
69873312--69873400	46	1.9	46	97	0	169	38	10	24	26	1.87
69873805--69873941	68	2.0	68	94	0	238	37	5	21	35	1.76
69877384--69877441	28	2.1	28	100	0	116	41	3	13	41	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69878716--69878820	41	2.6	41	82	0	129	33	28	20	17	1.95
69878798--69878836	16	2.4	16	91	0	60	30	25	25	17	1.97
69882549--69882593	16	2.8	16	96	0	81	13	26	28	31	1.94
69882565--69882720	41	3.8	41	84	0	195	19	17	27	35	1.94
69883498--69883534	18	2.1	17	90	5	56	35	0	13	51	1.41
69883465--69883691	113	2.0	112	96	3	420	33	6	14	45	1.70
69883611--69883647	18	2.1	17	90	5	56	35	0	13	51	1.41
69883643--69883927	137	2.1	139	90	2	450	26	9	19	45	1.80
69883639--69883927	69	4.2	69	92	2	447	26	8	19	45	1.80
69886078--69886168	42	2.2	42	100	0	182	47	10	18	23	1.80
69887990--69888192	95	2.1	95	81	4	237	33	14	23	28	1.94
69889602--69889638	6	6.2	6	96	0	65	16	2	0	81	0.81
69892516--69892629	54	2.1	54	80	3	122	17	33	22	26	1.96
69893647--69893855	41	5.1	41	84	3	233	34	27	21	16	1.95
69893631--69893857	123	1.9	121	84	3	303	34	26	20	18	1.95
69904408--69904438	4	7.8	4	92	0	53	22	3	0	74	0.96
69905152--69905182	12	2.5	12	94	5	53	32	6	0	61	1.21
69951234--69951280	20	2.3	20	89	10	69	65	0	8	25	1.20
69952588--69952631	4	10.8	4	86	13	63	72	0	4	22	1.02
69952587--69952643	25	2.3	24	85	11	80	73	0	7	19	1.05
69952587--69952648	12	5.1	12	83	12	56	72	0	9	17	1.10
69953662--69953702	11	3.6	11	83	3	55	60	9	12	17	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69957072--69957174	42	2.5	41	90	1	152	30	20	19	30	1.97
69959774--69959871	28	3.5	28	72	6	81	21	17	14	46	1.83
69960368--69960583	113	1.9	113	100	0	432	32	5	19	42	1.74
69973867--69973907	19	2.3	19	80	12	52	58	4	0	36	1.20
69986269--69986344	26	3.0	26	84	1	100	30	15	27	26	1.96
69987885--69988046	72	2.3	68	80	11	182	36	13	6	43	1.71
69989347--69989436	20	4.5	20	71	0	72	33	27	3	35	1.74
69989347--69989436	40	2.2	40	82	0	99	33	27	3	35	1.74
69996770--69996796	8	3.4	8	100	0	54	22	0	0	77	0.76
70000890--70000981	40	2.3	40	88	0	139	44	2	18	34	1.62
70001072--70001196	60	2.1	60	98	0	241	31	11	13	44	1.79
70004808--70004923	25	4.6	25	76	8	119	25	25	20	28	1.99
70004808--70004919	50	2.2	50	82	0	143	25	25	19	29	1.99
70015438--70015471	12	2.8	12	95	4	59	32	2	0	64	1.08
70016930--70017010	24	3.6	24	69	24	68	17	34	0	48	1.48
70022333--70022578	45	5.5	45	84	1	233	21	25	15	38	1.92
70025296--70025359	9	7.1	9	78	0	56	25	29	0	45	1.54
70031478--70031517	20	2.0	20	90	0	62	75	2	5	17	1.10
70031792--70031827	17	2.1	18	89	5	56	80	0	2	16	0.83
70033013--70033196	51	3.6	51	80	3	176	23	16	27	32	1.96
70033758--70033810	27	2.0	27	100	0	106	37	0	22	39	1.54
70035540--70035592	17	3.2	17	77	17	58	26	3	1	67	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70035540--70035592	16	3.2	16	79	12	63	26	3	1	67	1.17
70035619--70035680	26	2.3	27	81	8	74	25	4	9	59	1.49
70035666--70035705	16	2.6	15	88	11	55	35	0	0	65	0.93
70035663--70035723	27	2.2	27	82	8	70	36	4	0	59	1.19
70036190--70036234	17	2.6	17	85	3	54	24	4	11	60	1.49
70041275--70041324	7	6.9	7	81	6	55	84	6	2	8	0.86
70041273--70041326	22	2.4	22	84	3	63	83	7	1	7	0.88
70043038--70043385	51	7.3	51	77	12	344	28	17	24	29	1.97
70043036--70043579	188	3.0	184	80	12	622	27	17	24	30	1.97
70043038--70043385	96	3.7	96	81	4	429	28	17	24	29	1.97
70043323--70043459	74	1.9	73	89	1	211	27	16	22	32	1.96
70043396--70043817	51	8.7	51	75	13	368	28	16	25	29	1.97
70043426--70043809	99	4.0	98	77	8	371	29	16	24	29	1.96
70043588--70043666	41	2.0	41	84	2	106	24	15	29	31	1.95
70043438--70043793	187	1.9	189	83	4	468	29	16	24	29	1.96
70043828--70044166	142	2.4	142	85	0	462	28	20	23	27	1.99
70044345--70044384	20	2.0	20	90	0	62	75	2	5	17	1.10
70045727--70045788	26	2.3	27	81	8	74	25	4	9	59	1.49
70045774--70045813	16	2.6	15	88	11	55	35	0	0	65	0.93
70045771--70045831	27	2.2	27	82	8	70	36	4	0	59	1.19
70046299--70046343	17	2.6	17	85	3	54	22	4	13	60	1.51
70051050--70051079	2	15.0	2	100	0	60	0	50	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70052372--70052411	20	2.0	21	90	5	64	47	20	2	30	1.63
70053913--70053937	13	1.9	13	100	0	50	8	8	20	64	1.46
70054230--70054263	17	1.9	18	88	5	52	58	5	0	35	1.22
70054641--70054678	20	1.9	20	88	0	58	76	2	2	18	1.02
70074246--70074310	32	2.1	32	97	2	123	30	9	12	47	1.72
70076199--70076239	22	1.9	21	85	5	55	21	2	24	51	1.60

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210

The End!