genome.fa.s3.2.7.7.80.10.50.1000.154.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr8
Parameters: 2 7 7 80 10 50 1000
Length:  70076365

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   

This is table  154  of  210  ( 25174 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51616960--51616990	15	2.1	15	93	0	53	35	45	0	19	1.51
51617237--51617679	114	3.9	114	89	2	626	25	25	21	27	2.00
51617237--51617679	227	2.0	227	87	3	642	25	25	21	27	2.00
51617987--51618016	15	2.0	15	100	0	60	26	13	26	33	1.93
51623640--51623770	49	2.7	49	86	0	172	32	26	15	25	1.95
51623765--51623926	47	3.3	48	78	9	141	32	28	14	25	1.94
51623812--51623918	52	2.0	53	87	1	153	32	28	13	25	1.93
51628033--51628083	23	2.2	23	89	0	75	27	7	21	43	1.80
51629401--51629426	13	2.0	13	100	0	52	38	30	0	30	1.58
51629619--51630052	50	8.6	50	84	3	451	22	29	22	26	1.99
51632358--51632408	23	2.2	23	85	0	66	25	7	23	43	1.81
51647249--51647298	25	2.1	23	85	10	66	14	16	44	26	1.85
51647900--51647958	30	2.0	30	86	6	84	49	13	6	30	1.68
51650782--51650818	6	6.2	6	87	0	56	2	27	0	70	1.01
51654232--51654331	27	3.7	27	81	2	103	20	24	17	39	1.92
51654231--51654359	27	4.8	27	74	9	93	20	26	17	36	1.94
51654314--51654367	27	2.0	27	85	0	72	22	33	14	29	1.94
51659673--51659704	16	2.0	16	93	0	55	59	9	0	31	1.29
51664745--51664794	20	2.4	21	83	3	57	58	0	4	38	1.17
51668378--51668415	14	2.7	14	87	0	58	36	0	21	42	1.53
51668379--51668578	99	2.0	100	99	0	393	30	5	17	48	1.68
51668478--51668514	14	2.6	14	86	0	56	35	0	21	43	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51673074--51673185	27	4.2	26	79	12	104	24	19	16	40	1.91
51685308--51685375	21	3.2	21	78	0	82	44	19	19	17	1.88
51685302--51685437	42	3.2	41	81	4	155	44	18	19	16	1.86
51685317--51685384	21	3.2	21	71	8	66	45	17	19	17	1.86
51685324--51685437	21	5.4	21	68	8	79	44	18	19	17	1.87
51714077--51714109	16	2.0	17	88	5	50	27	3	18	51	1.60
51720380--51720495	42	2.7	43	74	11	114	23	19	25	31	1.98
51721892--51721924	16	2.0	17	88	5	50	27	3	18	51	1.60
51723622--51723679	25	2.3	24	80	8	71	39	5	1	53	1.33
51725506--51725555	24	2.1	24	92	0	82	38	6	4	52	1.45
51748686--51748774	25	3.1	30	81	15	116	25	24	7	41	1.82
51753117--51753205	25	3.1	30	80	18	109	25	25	6	41	1.80
51754057--51754081	12	2.1	12	100	0	50	16	8	0	76	1.02
51755056--51755270	59	3.4	58	73	20	209	50	4	4	40	1.41
51755044--51755384	130	2.6	131	87	2	474	50	4	4	39	1.45
51755186--51755302	62	1.9	59	84	5	153	50	4	4	41	1.41
51755780--51755812	14	2.3	15	90	10	52	39	3	0	57	1.14
51757180--51757211	15	2.1	15	94	0	55	68	9	6	15	1.36
51761268--51761320	12	4.3	12	72	13	54	54	1	0	43	1.11
51761283--51761321	20	2.0	20	94	0	69	53	2	0	43	1.14
51763437--51763493	21	2.7	21	80	0	78	22	29	22	24	1.99
51764691--51764769	39	2.0	39	97	0	149	25	21	17	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51770206--51770387	50	3.7	50	78	5	181	23	29	19	28	1.98
51770251--51770389	49	2.8	49	86	2	197	21	32	19	26	1.97
51770413--51770502	44	2.0	44	91	4	146	25	24	10	40	1.86
51776063--51776298	50	4.7	50	86	0	319	20	30	22	25	1.98
51776322--51776411	44	2.0	44	95	0	162	25	23	11	40	1.87
51781027--51781064	11	3.6	11	82	13	53	57	0	5	36	1.21
51784316--51784448	42	3.2	41	87	6	180	32	20	23	24	1.98
51784328--51784490	43	3.8	43	83	4	161	33	20	21	24	1.97
51784899--51784949	21	2.4	21	90	6	77	1	41	17	39	1.61
51784834--51784993	87	1.8	87	84	0	212	15	28	16	40	1.88
51786593--51786942	16	21.9	16	74	16	191	36	0	16	45	1.54
51786593--51786943	9	39.7	9	71	17	238	36	0	16	45	1.54
51786634--51786942	25	12.3	25	70	17	90	36	0	16	45	1.54
51786703--51786772	12	6.0	12	70	18	58	40	0	15	44	1.47
51786605--51786875	114	2.5	109	86	9	360	38	1	15	44	1.54
51786966--51787016	19	2.8	18	71	8	50	54	3	0	41	1.19
51787056--51787114	9	6.8	9	73	5	50	28	1	20	49	1.59
51788159--51788507	173	2.0	175	93	1	594	26	10	40	23	1.86
51788695--51788883	97	1.9	97	91	0	306	34	20	17	26	1.95
51788791--51789258	114	4.1	114	94	0	812	35	22	16	26	1.94
51789588--51789620	15	2.1	16	88	5	50	36	0	6	57	1.23
51789658--51789718	7	8.3	7	82	10	77	44	37	1	16	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51789658--51789718	15	4.1	14	81	10	77	44	37	1	16	1.58
51790067--51790091	7	3.6	7	100	0	50	48	36	0	16	1.46
51790063--51790099	14	2.6	14	86	0	56	48	35	0	16	1.46
51790074--51790133	21	2.9	21	74	0	57	50	23	0	26	1.50
51790586--51790926	113	3.0	113	83	3	427	26	25	22	25	2.00
51791023--51791198	73	2.4	72	87	2	246	23	26	25	24	2.00
51792554--51792679	62	2.1	57	82	7	144	49	5	3	42	1.42
51792614--51792688	36	2.1	35	83	11	91	54	4	2	38	1.33
51795347--51795392	18	2.6	18	80	10	58	67	0	28	4	1.10
51801002--51801036	18	2.0	18	94	5	63	11	28	45	14	1.79
51801979--51802022	18	2.4	18	78	10	54	40	2	15	40	1.60
51802353--51802419	25	2.7	25	78	0	80	35	14	17	31	1.91
51803915--51803958	18	2.4	18	78	10	54	40	2	15	40	1.60
51804290--51804356	25	2.7	25	79	4	73	35	7	17	38	1.78
51813373--51813430	25	2.3	25	82	11	66	48	5	1	44	1.35
51815084--51815114	16	1.9	16	93	0	53	74	9	6	9	1.23
51820678--51820716	16	2.4	16	91	0	60	41	0	17	41	1.50
51825542--51825574	17	1.9	17	88	11	50	63	18	3	15	1.43
51830447--51831028	44	13.5	44	71	13	140	28	22	20	28	1.98
51830517--51831072	44	12.7	45	71	14	256	27	22	20	28	1.99
51830414--51831073	217	3.0	217	93	0	1086	28	22	20	29	1.98
51839983--51840021	20	2.0	20	94	0	69	12	20	30	35	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51846113--51846200	10	8.5	10	74	8	52	54	1	4	39	1.28
51846114--51846199	20	4.2	20	74	14	68	53	1	4	40	1.29
51846232--51846309	32	2.4	32	81	14	88	48	2	0	48	1.15
51851540--51851564	12	2.1	12	100	0	50	60	0	0	40	0.97
51857142--51857236	45	2.1	45	88	1	138	33	27	6	32	1.82
51860186--51860241	20	2.8	20	78	10	69	23	26	0	50	1.50
51861895--51862216	109	3.0	108	87	2	443	35	17	16	31	1.92
51862277--51862307	15	2.0	16	93	6	55	64	6	9	19	1.45
51862357--51862388	4	7.8	4	96	3	55	75	3	0	21	0.95
51863086--51863121	12	3.2	12	92	7	58	72	5	0	22	1.05
51864800--51864996	44	4.5	44	68	18	131	27	25	18	27	1.98
51864534--51865233	132	5.3	132	88	1	974	27	23	17	31	1.97
51865228--51866829	46	35.2	46	78	7	1312	30	26	17	26	1.97
51865825--51866226	132	3.0	132	88	0	597	27	24	18	29	1.98
51867059--51867116	24	2.4	24	82	5	73	31	24	10	34	1.89
51868051--51868086	6	6.2	6	87	6	56	0	22	0	77	0.76
51868051--51868084	11	3.0	11	91	4	50	0	20	0	79	0.73
51868053--51868086	17	2.0	17	94	0	59	0	20	0	79	0.73
51868460--51868521	28	2.2	27	80	11	72	8	0	8	83	0.80
51871734--51872065	109	3.1	108	89	2	472	36	16	15	32	1.89
51872187--51872218	16	1.9	16	93	6	55	75	3	3	18	1.08
51875305--51875333	12	2.4	12	100	0	58	13	37	20	27	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51876901--51877205	45	6.8	45	77	9	140	21	20	16	41	1.90
51876984--51877199	90	2.4	90	78	6	233	23	18	17	39	1.92
51880688--51880712	10	2.5	10	100	0	50	76	8	0	16	1.02
51887231--51887349	45	2.6	45	81	2	114	39	10	25	24	1.88
51888471--51888655	51	3.7	49	77	6	167	24	16	27	31	1.96
51888661--51888751	45	2.0	45	93	0	155	26	17	24	31	1.97
51906047--51906120	13	5.6	13	71	9	51	36	18	1	43	1.59
51906085--51906128	13	3.3	13	78	6	52	31	20	0	47	1.50
51906191--51906256	25	2.6	25	85	0	87	28	24	22	24	1.99
51908947--51909017	33	2.3	30	77	13	88	46	11	7	35	1.67

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210