genome.fa.s3.2.7.7.80.10.50.1000.27.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr8
Parameters: 2 7 7 80 10 50 1000
Length:  70076365

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   

This is table  27  of  210  ( 25174 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9653179--9653216	13	2.9	13	92	0	67	28	7	23	39	1.83
9653158--9653218	26	2.4	25	83	8	77	32	8	22	36	1.84
9656197--9656281	39	2.3	37	91	6	136	38	20	15	25	1.91
9658987--9659031	20	2.3	19	82	14	56	42	2	0	55	1.12
9658988--9659027	21	2.0	21	90	5	64	45	2	0	52	1.14
9659350--9659409	29	2.0	29	87	12	86	73	0	26	0	0.84
9659350--9659410	31	2.0	31	84	12	81	73	0	26	0	0.83
9659717--9660297	106	5.6	105	86	7	690	30	0	16	51	1.51
9659871--9660297	106	4.1	106	94	3	697	32	0	17	49	1.53
9662214--9662319	33	3.2	32	80	5	122	16	42	14	27	1.86
9665507--9665561	19	3.0	19	73	5	51	60	16	0	23	1.36
9667159--9667189	16	1.9	16	93	0	53	19	12	0	67	1.22
9667302--9667340	18	2.3	18	82	8	55	41	0	2	56	1.13
9675761--9676045	142	2.0	143	99	0	563	24	28	23	22	1.99
9676223--9676266	11	3.8	12	80	19	58	25	31	0	43	1.55
9677956--9677995	18	2.2	18	90	0	62	20	30	7	42	1.79
9678568--9678650	21	3.9	21	73	9	78	46	30	2	20	1.63
9678603--9678926	22	14.8	22	74	8	157	50	32	0	16	1.50
9678678--9678738	15	4.2	15	80	14	65	55	27	0	16	1.41
9678581--9678926	43	8.0	43	81	5	358	50	31	0	17	1.52
9678831--9678861	15	2.1	15	93	0	53	58	29	0	12	1.35
9678824--9678926	7	14.4	7	71	20	54	51	32	0	16	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9678888--9678951	29	2.2	29	88	2	94	45	34	0	20	1.51
9681751--9681810	29	2.1	29	93	0	102	25	38	16	20	1.93
9682159--9682689	125	4.2	125	85	2	746	29	22	18	29	1.97
9682159--9682689	250	2.1	250	92	0	900	29	22	18	29	1.97
9682812--9682909	28	3.3	28	65	15	79	47	10	3	38	1.53
9682782--9682917	62	2.2	62	98	1	265	46	11	2	38	1.56
9687639--9687881	31	7.8	30	71	9	141	29	13	16	40	1.87
9687648--9687883	62	3.8	62	84	2	321	28	13	17	40	1.88
9692252--9692291	19	2.1	19	100	0	80	45	10	15	30	1.78
9706283--9706359	39	2.0	39	92	0	127	32	22	23	22	1.98
9710729--9710797	20	3.3	20	67	25	61	46	15	5	31	1.70
9714779--9714815	5	7.4	5	100	0	74	81	0	18	0	0.70
9715220--9715248	11	2.6	11	100	0	58	51	0	0	48	1.00
9716509--9716579	37	1.9	37	85	0	97	38	1	22	38	1.63
9722302--9722497	43	4.6	42	80	8	211	33	26	17	22	1.96
9722302--9722494	85	2.3	84	94	0	332	34	25	17	22	1.96
9726075--9726173	3	33.7	3	69	15	55	30	5	4	60	1.36
9726075--9726171	15	6.6	15	73	14	69	30	5	4	59	1.38
9733542--9734855	88	14.9	88	84	2	1527	26	26	26	21	2.00
9733542--9734855	176	7.5	177	85	2	1682	26	26	26	21	2.00
9737755--9737980	43	5.4	41	73	13	174	35	24	16	23	1.95
9737744--9737980	85	2.8	85	83	4	309	35	24	17	23	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9737954--9738006	26	2.0	26	88	0	79	28	32	16	22	1.96
9742853--9742898	23	2.0	24	87	12	69	73	4	8	13	1.21
9745012--9745057	23	2.0	24	87	12	69	73	4	8	13	1.21
9746444--9746471	5	5.6	5	100	0	56	64	17	0	17	1.30
9747174--9747219	23	2.0	24	87	12	69	73	4	8	13	1.21
9762825--9762897	28	2.5	30	80	6	80	41	2	2	53	1.29
9762893--9762964	20	3.7	19	88	7	101	34	0	8	56	1.29
9763098--9763151	23	2.3	23	81	6	65	33	11	14	40	1.82
9764213--9764274	21	2.8	21	80	7	70	54	4	3	37	1.38
9766084--9766165	32	2.6	31	80	12	87	58	1	2	37	1.19
9766093--9766165	32	2.3	32	84	11	89	58	0	1	39	1.06
9770156--9770196	21	2.0	21	90	9	66	21	14	29	34	1.93
9770328--9770381	27	2.0	27	85	0	72	27	9	22	40	1.84
9770672--9770702	3	10.7	3	93	6	55	67	0	32	0	0.91
9772641--9772676	19	1.9	18	88	5	54	36	2	0	61	1.11
9777117--9777158	21	2.0	21	85	0	57	33	2	21	42	1.66
9777716--9777783	25	2.7	25	88	0	91	23	23	25	27	2.00
9784056--9784094	20	2.0	20	90	10	62	15	23	5	56	1.59
9784346--9784538	50	3.7	50	79	4	179	24	27	20	27	1.99
9786233--9786276	23	1.9	23	90	0	70	43	4	9	43	1.56
9787567--9787625	23	2.6	23	88	0	82	23	20	16	38	1.92
9787609--9787683	23	3.4	22	85	3	89	18	28	24	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9787609--9787667	23	2.6	23	94	0	100	16	28	25	28	1.97
9788081--9788131	25	2.0	25	96	0	93	37	5	19	37	1.76
9790648--9790726	25	3.1	25	78	8	88	21	25	22	30	1.99
9792577--9792632	20	2.8	20	94	2	96	60	0	3	35	1.14
9792587--9792624	11	3.6	11	79	13	53	57	0	5	36	1.21
9792411--9792632	20	11.8	18	69	21	86	59	2	1	35	1.22
9793126--9793183	20	2.8	21	89	7	84	32	0	5	62	1.18
9793067--9793184	51	2.3	52	74	8	118	31	2	4	61	1.28
9793169--9793271	9	11.0	9	68	19	52	30	0	3	65	1.17
9797630--9797671	18	2.3	19	84	12	52	61	0	30	7	1.22
9797817--9797849	17	1.9	17	88	11	50	57	6	21	15	1.59
9800976--9801576	304	2.0	303	90	1	954	30	9	17	42	1.82
9803615--9803750	64	2.1	64	91	0	218	41	2	13	41	1.57
9815813--9815875	29	2.2	29	82	5	74	23	31	22	22	1.98
9823733--9823767	18	2.0	18	88	5	54	74	5	5	14	1.19
9827948--9828041	25	3.8	25	81	0	98	30	17	26	25	1.97
9828033--9828109	24	3.2	24	84	0	100	35	16	28	19	1.94
9832633--9832675	22	2.0	22	100	0	86	32	23	23	20	1.98
9834994--9835079	39	2.2	38	81	6	100	56	4	4	33	1.40
9836659--9836808	44	3.4	44	75	1	147	24	28	18	28	1.98
9836656--9836846	89	2.1	89	87	3	269	24	27	19	28	1.99
9836859--9837417	45	12.4	45	82	3	215	29	24	16	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9836883--9837416	90	5.9	90	86	1	687	29	24	16	28	1.97
9836873--9837416	135	4.0	135	87	1	725	29	25	16	28	1.97
9855882--9855910	15	1.9	15	100	0	58	6	10	13	68	1.37
9855976--9856136	80	2.0	80	93	0	277	39	12	16	31	1.86
9856124--9856161	7	5.4	7	93	0	67	15	0	39	44	1.47
9858222--9858249	2	14.0	2	100	0	56	50	0	0	50	1.00
9865642--9865668	14	1.9	14	100	0	54	66	0	25	7	1.17
9867031--9867818	88	9.0	88	89	1	1134	23	27	23	25	2.00
9868976--9869008	15	2.1	16	94	5	59	12	15	0	72	1.12
9868976--9869015	8	5.6	7	88	8	55	12	15	0	72	1.12
9876396--9876438	22	2.0	22	81	9	52	20	0	13	65	1.27
9879187--9879734	27	20.4	27	83	2	586	42	21	15	19	1.88
9879852--9879896	19	2.4	18	82	7	54	31	6	31	31	1.83
9883343--9883394	20	2.6	21	80	17	65	34	19	5	40	1.75
9884689--9884808	40	3.0	40	80	2	141	25	28	15	31	1.95
9887532--9887579	19	2.5	20	80	12	57	45	0	33	20	1.52
9918457--9918527	34	2.1	34	84	5	90	19	12	5	61	1.50
9924938--9924996	21	2.8	21	92	0	100	25	8	37	28	1.85
9935176--9935204	12	2.4	12	100	0	58	0	6	13	79	0.93
9937673--9937845	45	3.9	44	85	5	197	37	29	11	21	1.89
9941375--9941438	22	3.0	21	65	6	56	51	10	1	35	1.47
9941814--9941891	11	6.8	11	70	13	50	58	1	12	26	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9941814--9941916	29	3.6	29	85	3	138	59	0	12	27	1.40
9941945--9942011	21	3.0	21	76	6	62	65	2	10	20	1.36
9942007--9942088	12	6.8	12	76	16	64	54	1	19	24	1.51
9942006--9942089	18	4.7	17	73	22	66	55	1	19	23	1.49
9942425--9942478	17	3.1	17	75	24	58	57	0	12	29	1.36
9942532--9942589	20	2.9	21	89	7	93	67	0	12	20	1.22
9942584--9942679	6	17.6	5	91	6	111	56	0	20	22	1.43
9942558--9942679	49	2.5	49	82	4	149	57	0	18	23	1.41
9945354--9945681	90	3.6	90	89	1	496	52	14	7	25	1.69
9945311--9945747	180	2.4	177	77	6	527	53	13	7	25	1.66

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210