Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr8
Parameters: 2 7 7 80 10 50 1000
Length:  70076365

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   

This is table  125  of  210  ( 25174 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41936489--41936513
13
1.9
13
100
0
50
12
0
48
40
1.40
41937531--41937564
12
2.7
13
95
4
61
44
0
0
55
0.99
41937663--41937979
158
2.0
158
100
0
634
41
3
12
42
1.58
41941647--41941779
22
6.0
22
75
6
108
39
19
21
19
1.92
41941647--41941777
44
3.0
43
75
3
127
40
19
21
19
1.92
41942463--41942892
215
2.0
215
99
0
844
38
14
10
36
1.80
41945525--41945593
33
2.1
34
91
2
113
33
14
7
44
1.73
41945736--41945765
14
2.2
13
94
5
51
46
0
6
46
1.29
41947548--41947596
18
2.7
18
81
6
55
48
6
0
44
1.27
41950950--41950976
2
13.5
2
100
0
54
0
0
48
51
1.00
41951560--41952272
41
17.4
41
97
0
1284
30
19
25
24
1.98
41953946--41953974
12
2.4
12
100
0
58
31
27
24
17
1.97
41962810--41962854
19
2.4
18
82
10
56
26
4
0
68
1.08
41962880--41962928
18
2.7
18
82
14
57
22
10
2
65
1.34
41965300--41965384
18
4.7
18
75
18
61
57
1
2
38
1.19
41965780--41965817
20
2.0
20
90
10
62
31
0
10
57
1.32
41966319--41966355
2
18.5
2
100
0
74
0
48
0
51
1.00
41976275--41976371
49
2.0
49
87
2
142
20
13
22
43
1.87
41981374--41981470
48
2.0
49
84
6
126
20
16
21
41
1.90
41988020--41988045
11
2.4
11
100
0
52
69
15
0
15
1.20
41998307--41998388
24
3.4
24
75
14
78
28
23
17
31
1.96
42001641--42001766
39
3.2
39
71
10
139
64
0
0
34
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
42001639--42001704
32
2.1
32
86
10
93
63
1
0
34
1.04
42001657--42001753
49
2.0
49
80
11
110
58
1
0
40
1.05
42001633--42001807
79
2.2
79
100
0
350
60
1
0
38
1.05
42001718--42001783
32
2.1
32
86
10
93
63
1
0
34
1.04
42001671--42001806
40
3.4
40
72
9
143
58
1
0
39
1.07
42009062--42009125
32
2.0
32
100
0
128
21
37
6
34
1.79
42011252--42011276
5
5.0
5
100
0
50
0
60
40
0
0.97
42011309--42011348
16
2.5
16
91
0
62
47
2
7
42
1.45
42011547--42011572
2
13.0
2
100
0
52
50
0
0
50
1.00
42012710--42012755
24
1.9
24
86
0
65
15
43
2
39
1.59
42012778--42012807
14
2.1
14
93
0
51
10
43
10
36
1.72
42013234--42013291
27
2.1
27
90
6
91
36
29
6
27
1.83
42014632--42014674
17
2.7
15
83
13
59
23
11
9
55
1.64
42015584--42015614
15
2.1
15
93
0
53
35
35
3
25
1.72
42015735--42015811
20
3.8
20
75
13
77
58
2
3
35
1.30
42015898--42015937
20
2.0
20
90
0
62
50
12
10
27
1.72
42015921--42015958
14
2.7
14
87
0
58
39
18
7
34
1.80
42021548--42021610
31
2.0
31
100
0
126
38
6
30
25
1.81
42023836--42023860
10
2.5
10
100
0
50
60
0
20
20
1.37
42025928--42025969
13
3.5
13
75
18
54
38
0
11
50
1.40
42025921--42025969
23
2.2
22
96
3
89
38
0
10
51
1.36
42028581--42028845
130
2.0
130
97
2
505
45
9
10
34
1.70
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
42028811--42028849
19
2.1
19
85
0
51
56
0
2
41
1.13
42028798--42028859
27
2.3
26
80
20
67
58
0
1
40
1.08
42030868--42030938
30
2.4
30
95
0
124
19
30
29
19
1.97
42032095--42032207
25
4.5
25
77
8
95
31
20
21
26
1.98
42033319--42033358
14
2.9
14
84
0
53
32
7
17
42
1.77
42033342--42033381
20
2.0
20
90
0
62
27
10
12
50
1.72
42034587--42034699
25
4.5
25
77
8
95
31
20
21
26
1.98
42037000--42037033
17
2.0
17
88
0
50
35
0
0
64
0.94
42037026--42037065
21
1.9
21
84
0
53
35
5
0
60
1.19
42040017--42040084
34
2.0
34
97
0
127
26
4
32
36
1.76
42042886--42042955
31
2.3
31
76
0
77
47
8
1
42
1.43
42048883--42048998
41
2.8
41
84
2
135
23
22
25
29
1.99
42049607--42049639
14
2.3
15
94
5
59
36
0
27
36
1.57
42049670--42049703
7
4.9
7
85
0
50
17
2
52
26
1.58
42049711--42049742
15
2.1
16
94
5
57
21
0
31
46
1.52
42049803--42049914
7
16.4
7
72
10
54
19
0
43
35
1.57
42049801--42049910
33
3.2
33
81
11
109
19
0
44
35
1.57
42049826--42049910
14
6.2
13
73
18
75
21
0
44
34
1.52
42049803--42049910
14
7.9
14
70
24
63
19
0
44
35
1.57
42049883--42049930
22
2.2
22
85
7
62
29
0
37
33
1.58
42049872--42049939
29
2.3
30
82
5
77
27
0
39
32
1.57
42050253--42050306
24
2.3
24
80
3
65
20
14
18
46
1.84
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
42051979--42052162
43
4.3
43
92
0
289
21
16
32
29
1.95
42052257--42052299
22
2.0
22
85
0
59
41
23
20
13
1.88
42054201--42054247
18
2.6
18
86
0
58
29
19
27
23
1.98
42056605--42056750
73
2.0
73
98
0
283
34
16
7
41
1.77
42063017--42063187
85
2.0
85
93
0
288
36
21
8
33
1.83
42071683--42071711
2
15.0
2
92
7
51
48
0
0
51
1.00
42073298--42073456
44
3.7
44
76
12
161
27
22
22
27
1.99
42073217--42073454
128
1.9
128
84
3
327
26
21
23
28
1.99
42073551--42073865
44
7.2
45
62
9
121
28
23
18
29
1.98
42073551--42073921
132
2.8
132
95
0
670
28
23
18
29
1.98
42078152--42078197
19
2.3
20
85
3
58
45
8
19
26
1.79
42078231--42078256
13
2.0
13
100
0
52
46
15
7
30
1.74
42080402--42080430
2
15.0
2
92
7
51
48
0
0
51
1.00
42081671--42081810
41
3.6
39
76
8
142
33
25
16
24
1.96
42083974--42084004
2
15.5
2
100
0
62
48
0
0
51
1.00
42088306--42088372
30
2.3
30
77
12
84
19
38
0
41
1.51
42090444--42090567
43
2.9
43
86
1
167
26
17
23
32
1.97
42091652--42091791
41
3.6
39
76
8
142
33
25
16
24
1.96
42092666--42092726
4
13.8
4
74
19
50
3
21
6
68
1.27
42094248--42094278
2
15.5
2
100
0
62
48
0
0
51
1.00
42098580--42098646
30
2.3
30
77
12
84
19
38
0
41
1.51
42100718--42100841
43
2.9
43
86
1
167
26
17
23
32
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
42113488--42113530
21
2.0
21
90
0
68
39
27
4
27
1.76
42115143--42115175
6
5.5
6
100
0
66
15
0
48
36
1.45
42115221--42115245
7
3.6
7
100
0
50
0
12
0
88
0.53
42131311--42131343
11
2.9
12
86
13
52
66
0
0
33
0.92
42133890--42133917
11
2.5
11
100
0
56
0
0
7
92
0.37
42141833--42141914
42
2.0
42
87
0
119
48
10
4
35
1.60
42142066--42142101
10
3.5
10
88
3
54
0
27
0
72
0.85
42143242--42143306
30
2.2
30
91
0
103
27
27
3
41
1.71
42143266--42143311
21
2.2
21
84
0
56
30
21
4
43
1.72
42143460--42143507
20
2.5
19
80
6
51
33
2
2
62
1.18
42144537--42144828
150
1.9
150
89
0
449
30
20
19
29
1.97
42145628--42145674
25
1.9
25
82
4
60
40
0
4
55
1.19
42145740--42146031
150
1.9
150
89
0
449
30
20
19
29
1.97
42146831--42146886
25
2.3
24
79
11
69
44
0
3
51
1.18
42146836--42146883
25
1.9
25
87
8
71
37
0
4
58
1.18
42149932--42150198
124
2.1
124
88
3
394
30
18
16
34
1.93
42150330--42150402
21
3.5
21
66
14
60
47
21
0
30
1.51
42151064--42151093
12
2.5
12
100
0
60
60
0
6
33
1.23
42153095--42153302
102
2.0
103
99
0
409
30
9
13
46
1.75
42157830--42157960
57
2.3
57
84
2
156
41
4
19
34
1.72
42163368--42163498
57
2.3
57
84
2
156
41
4
19
34
1.72
42164419--42164445
2
13.5
2
100
0
54
48
0
0
51
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
42164853--42164902
21
2.4
21
78
15
68
40
10
2
48
1.48
42164988--42165107
41
2.9
40
83
2
132
30
22
18
29
1.97
42167853--42167911
19
3.2
17
77
15
55
35
1
3
59
1.24
42167907--42167972
18
3.6
18
73
10
53
31
3
1
63
1.19
42168036--42168109
30
2.5
29
84
6
103
52
14
5
27
1.63
42181084--42181118
16
2.1
17
89
5
54
31
0
8
60
1.27
42184912--42184948
5
7.2
5
93
6
65
18
2
0
78
0.87
42184915--42184945
16
1.9
16
100
0
62
19
3
0
77
0.90
42185859--42185898
15
2.7
15
84
0
53
37
5
2
55
1.35
42187069--42187127
30
2.0
30
100
0
118
22
27
16
33
1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210