genome.fa.s3.2.7.7.80.10.50.1000.103.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr8
Parameters: 2 7 7 80 10 50 1000
Length:  70076365

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   

This is table  103  of  210  ( 25174 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34981819--34981946	41	3.1	41	94	2	229	17	21	33	27	1.96
34981825--34981946	42	2.9	42	96	1	228	17	21	33	27	1.95
34988327--34988382	16	3.5	16	92	0	94	37	7	26	28	1.83
34988361--34988456	45	2.2	44	86	5	131	32	4	25	38	1.75
34988710--34988923	105	2.0	106	97	2	405	46	12	5	35	1.65
34993614--34994136	260	2.0	261	99	0	1039	38	8	12	39	1.75
34995326--34995350	4	6.2	4	100	0	50	52	24	0	24	1.48
35009408--35010199	396	2.0	396	100	0	1584	32	12	22	32	1.92
35010036--35010341	101	3.0	100	89	0	441	31	16	23	28	1.96
35010335--35010385	24	2.1	24	100	0	102	47	3	27	21	1.68
35024967--35025010	21	2.1	21	100	0	88	22	9	43	25	1.82
35028440--35028498	24	2.4	25	82	2	75	15	28	20	35	1.93
35028683--35028755	24	3.1	23	77	11	76	16	21	21	39	1.92
35031125--35031155	7	4.4	7	100	0	62	0	58	0	41	0.98
35033071--35033123	19	2.7	19	85	5	70	22	1	1	73	1.03
35033832--35034111	106	2.6	107	79	4	341	30	19	21	28	1.98
35035167--35035219	19	2.7	19	85	5	70	22	1	1	73	1.03
35035928--35036367	108	4.1	107	86	2	580	30	19	20	30	1.97
35046294--35046338	17	2.6	18	78	3	56	64	4	2	28	1.25
35054193--35054224	2	16.0	2	100	0	64	50	0	0	50	1.00
35057527--35057594	31	2.2	32	84	5	86	42	14	8	33	1.77
35058513--35058759	122	2.0	123	99	0	487	37	7	12	42	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35062937--35062976	13	2.9	15	79	20	52	72	0	27	0	0.85
35071562--35071609	13	3.8	13	76	18	57	12	4	39	43	1.62
35071539--35071604	18	3.4	18	75	18	60	10	4	42	42	1.60
35071557--35071615	23	2.5	24	94	2	102	10	3	42	44	1.55
35077738--35077810	25	2.9	25	72	8	67	20	26	19	34	1.96
35084356--35084522	24	6.8	25	76	10	107	19	28	18	33	1.96
35084356--35084511	73	2.1	74	81	7	183	19	28	18	32	1.96
35084477--35084540	25	2.5	25	82	5	74	20	28	25	26	1.99
35098294--35098322	15	1.9	15	100	0	58	72	20	0	6	1.07
35101642--35101868	121	1.9	118	86	2	319	37	15	20	26	1.93
35110946--35110970	7	3.6	7	100	0	50	60	16	12	12	1.60
35111227--35111258	3	10.7	3	100	0	64	34	0	31	34	1.58
35111868--35111895	3	9.3	3	100	0	56	64	0	35	0	0.94
35116657--35116715	31	1.9	31	92	0	100	30	6	13	49	1.68
35121712--35121793	17	4.8	18	72	15	59	63	2	2	31	1.20
35121713--35121785	26	2.8	25	74	15	69	63	2	2	31	1.23
35121712--35121775	18	3.8	17	75	19	62	64	1	1	32	1.13
35127795--35127832	18	2.1	18	95	0	67	28	5	13	52	1.61
35130987--35131029	15	2.9	14	90	10	68	86	4	2	6	0.79
35130994--35131035	15	2.8	15	96	0	75	88	4	0	7	0.64
35130996--35131037	21	2.0	20	86	4	57	85	7	0	7	0.73
35130986--35131035	14	3.5	13	84	12	55	86	4	2	8	0.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35131165--35131217	3	17.3	3	84	11	72	66	0	3	30	1.10
35133134--35133326	45	4.3	45	71	11	180	27	22	20	29	1.98
35133315--35134480	132	8.9	128	83	7	1211	28	24	19	27	1.99
35135697--35135731	7	5.0	7	86	13	54	14	17	0	68	1.21
35139771--35139832	29	2.1	29	100	0	124	27	29	30	12	1.93
35148428--35148459	2	16.0	2	100	0	64	0	0	50	50	1.00
35148510--35148602	28	3.3	28	63	16	75	27	12	20	38	1.89
35148538--35148666	4	31.2	4	85	9	152	25	4	24	45	1.72
35148441--35148630	56	3.4	56	94	2	321	24	8	24	42	1.83
35150545--35150616	24	3.0	24	100	0	144	58	8	4	29	1.46
35151816--35151905	23	4.0	23	81	2	103	43	34	3	18	1.67
35151838--35151947	48	2.3	46	85	10	143	42	34	5	17	1.72
35151867--35151955	23	3.9	22	80	13	99	44	31	4	19	1.70
35152756--35152868	54	2.1	54	84	0	154	22	31	23	22	1.98
35152756--35152889	54	2.5	54	80	4	137	20	29	26	23	1.99
35166878--35166921	10	4.0	11	77	11	54	77	2	4	15	1.04
35179359--35179397	20	2.0	20	89	0	60	28	20	7	43	1.79
35180831--35180880	14	3.5	14	76	12	57	36	0	10	54	1.34
35180828--35180895	30	2.3	29	79	2	82	33	2	7	55	1.42
35184575--35184659	31	2.7	31	90	5	136	57	0	2	40	1.11
35184575--35184698	41	3.0	42	86	8	141	58	0	3	38	1.15
35184575--35184668	11	8.9	11	76	14	92	57	0	2	40	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35190762--35190805	21	2.1	21	95	0	79	63	11	4	20	1.44
35196477--35196565	9	9.4	9	71	14	56	70	1	0	28	0.94
35196477--35196565	19	4.7	19	72	15	60	70	1	0	28	0.94
35196483--35196566	29	2.9	30	77	10	93	69	1	0	29	0.97
35196523--35196574	19	2.6	19	87	6	68	71	0	1	26	0.97
35196513--35196584	10	7.1	10	78	7	65	65	0	1	33	1.02
35196492--35196584	29	3.2	28	76	14	91	65	0	1	33	1.00
35196449--35196724	140	2.0	141	82	9	341	59	3	7	28	1.42
35196713--35196765	17	3.1	16	84	10	61	62	1	7	28	1.33
35196693--35196765	35	2.1	35	82	10	87	61	4	6	27	1.40
35196693--35196767	18	4.2	18	80	13	75	61	4	6	28	1.39
35197044--35197094	19	2.7	19	78	3	59	29	1	1	66	1.13
35197071--35197126	26	2.2	26	84	12	71	33	3	0	62	1.12
35197044--35197179	9	14.4	9	66	13	60	33	1	1	63	1.12
35200832--35200866	18	1.9	18	100	0	70	28	8	11	51	1.67
35215241--35215280	2	20.0	2	100	0	80	0	0	50	50	1.00
35224336--35224380	20	2.2	20	84	7	56	24	8	4	62	1.43
35225335--35225375	21	1.9	22	90	5	66	41	7	0	51	1.30
35225968--35226045	36	2.2	35	81	9	86	47	14	10	28	1.76
35225995--35226054	17	3.4	17	80	17	77	40	10	13	36	1.78
35225997--35226061	19	3.5	19	85	10	82	40	9	12	38	1.75
35225979--35226054	36	2.1	38	85	7	104	42	10	11	35	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35226027--35226074	20	2.4	19	76	10	51	41	6	12	39	1.68
35226176--35226281	17	6.0	18	77	10	103	46	8	13	32	1.73
35226189--35226282	36	2.6	35	86	5	125	42	8	12	36	1.74
35226176--35226282	18	6.0	18	73	17	89	45	8	13	32	1.73
35226295--35226339	16	2.7	17	82	6	65	51	13	8	26	1.70
35226333--35226374	20	2.0	22	90	9	70	40	9	2	47	1.49
35226968--35227023	22	2.6	22	85	2	78	0	25	0	75	0.81
35226967--35227036	22	3.2	21	77	18	65	0	25	0	74	0.82
35227576--35227735	30	5.4	29	75	8	110	36	6	24	31	1.82
35227679--35227751	30	2.5	30	88	6	105	42	2	20	34	1.67
35228045--35230168	76	26.8	83	91	5	1664	38	20	14	26	1.91
35228264--35230143	76	23.7	78	91	4	1829	38	20	14	26	1.91
35228053--35230143	228	8.8	232	85	7	1905	38	20	14	26	1.91
35230140--35230198	30	2.0	30	86	0	82	49	8	11	30	1.69
35231029--35231084	17	3.4	16	78	9	58	3	3	7	85	0.81
35231023--35231084	24	2.5	25	87	7	83	3	4	6	85	0.82
35231046--35231075	15	1.9	16	93	6	53	6	0	6	86	0.70
35231035--35231086	18	2.9	18	78	16	56	3	1	9	84	0.82
35236899--35236958	19	3.2	18	76	19	52	41	8	11	38	1.72
35236881--35237179	18	16.3	19	68	16	107	43	9	12	35	1.74
35236899--35236948	20	2.6	20	87	6	68	42	10	10	38	1.72
35236879--35237016	17	7.8	17	68	16	75	44	10	13	31	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35237192--35237252	16	3.7	17	76	8	63	50	11	6	31	1.64
35237229--35237262	16	2.1	17	88	5	52	44	11	5	38	1.65
35237835--35237879	23	2.0	23	86	0	63	8	8	0	82	0.85
35237841--35237915	11	6.5	11	74	19	55	4	16	0	80	0.87
35237851--35237920	35	2.1	34	84	7	90	1	18	0	80	0.80
35237869--35237931	27	2.3	27	81	8	74	0	23	0	76	0.79
35237833--35237923	12	7.8	11	76	10	74	4	15	0	80	0.87
35238477--35238639	30	5.5	29	75	8	134	38	4	25	31	1.77
35238511--35238646	30	4.5	30	78	9	136	38	3	23	34	1.73
35238476--35238639	59	2.8	59	72	14	149	37	4	25	31	1.77

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210