genome.fa.s3.2.7.7.80.10.50.1000.129.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr8
Parameters: 2 7 7 80 10 50 1000
Length:  70076365

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   

This is table  129  of  210  ( 25174 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43025088--43025183	29	3.4	29	82	5	115	40	38	3	17	1.66
43025087--43025152	22	3.0	22	82	4	80	36	43	1	18	1.59
43025324--43025464	41	3.4	41	89	0	174	17	24	17	40	1.90
43027215--43027271	20	2.8	19	81	5	60	35	0	8	56	1.31
43027720--43027764	20	2.2	21	88	4	65	48	20	4	26	1.68
43028061--43028145	43	2.0	43	90	0	134	40	7	17	35	1.77
43030272--43030323	25	2.1	25	100	0	104	15	3	17	63	1.45
43034697--43034738	20	2.1	20	86	0	57	47	0	7	45	1.30
43039886--43039910	3	8.3	3	100	0	50	68	0	0	32	0.90
43040685--43040710	12	2.2	12	100	0	52	7	15	30	46	1.74
43040888--43041172	41	7.0	41	92	1	473	17	24	28	29	1.98
43042124--43042151	14	2.0	14	100	0	56	50	0	0	50	1.00
43042280--43042531	83	3.0	83	83	5	321	41	14	14	30	1.85
43047949--43048008	29	2.0	32	83	9	81	48	6	26	18	1.72
43050099--43050166	33	2.1	33	97	0	127	50	1	7	41	1.39
43059918--43059955	19	2.0	19	94	0	67	28	10	28	31	1.90
43067589--43067836	120	2.1	121	96	0	462	33	13	26	27	1.93
43077315--43077361	26	1.9	25	87	12	71	14	17	10	57	1.65
43077349--43077451	51	2.0	52	98	1	199	27	14	5	52	1.64
43078188--43078321	44	3.0	44	90	0	214	28	18	25	27	1.98
43078284--43078701	87	4.8	87	98	0	782	27	23	25	24	2.00
43078284--43078766	174	2.8	174	90	3	625	28	22	24	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43078284--43078766	261	1.9	261	86	4	706	28	22	24	24	2.00
43080677--43080713	8	4.8	8	86	6	58	13	0	2	83	0.74
43080677--43080713	15	2.4	16	90	4	58	13	0	2	83	0.74
43080658--43080882	112	2.0	113	99	0	443	25	6	8	59	1.51
43080789--43080825	8	4.8	8	86	6	58	13	0	2	83	0.74
43080789--43080825	15	2.4	16	90	4	58	13	0	2	83	0.74
43085074--43085111	19	2.0	19	94	0	67	28	10	28	31	1.90
43087551--43087603	26	2.0	26	100	0	106	32	7	7	52	1.58
43087615--43087662	21	2.3	20	78	3	51	29	20	8	41	1.81
43090593--43090645	3	17.7	3	100	0	106	66	0	0	33	0.92
43092687--43092722	17	2.1	18	89	5	56	30	0	5	63	1.17
43096279--43096311	16	2.1	16	94	0	57	51	18	9	21	1.73
43100029--43100093	33	2.0	33	93	0	112	26	20	15	38	1.92
43102195--43102222	9	3.1	9	100	0	56	14	10	10	64	1.50
43104228--43104317	25	3.6	25	86	3	128	32	20	27	20	1.97
43104458--43104491	17	2.0	17	88	11	52	47	29	11	11	1.76
43115493--43115522	13	2.2	14	94	5	53	73	0	6	20	1.05
43115988--43116023	3	12.0	3	100	0	72	33	0	0	66	0.92
43116213--43116256	16	2.7	16	89	3	61	68	11	20	0	1.20
43116970--43117056	48	1.9	45	86	11	124	25	28	19	26	1.99
43122185--43122267	42	2.0	42	95	0	148	38	16	9	34	1.82
43126723--43126770	26	1.9	24	83	8	60	56	10	0	33	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43126912--43126953	4	10.0	4	80	19	50	2	23	2	71	1.10
43128269--43128327	21	2.8	20	80	14	57	54	3	1	40	1.27
43128309--43128370	11	5.9	11	73	22	53	58	0	3	38	1.15
43128319--43128352	17	2.0	17	88	0	50	64	0	0	35	0.94
43129989--43130024	17	2.0	19	89	10	58	66	11	2	19	1.35
43132096--43132181	44	2.0	44	88	2	129	47	11	10	30	1.73
43147385--43147470	44	2.0	44	88	2	129	47	11	10	30	1.73
43154163--43154247	44	1.9	44	90	0	134	44	14	15	25	1.84
43158809--43158862	27	2.0	27	100	0	108	29	14	14	40	1.86
43164775--43165028	128	2.0	128	91	0	409	29	19	18	33	1.95
43171027--43171117	44	2.1	44	89	0	137	47	4	9	38	1.57
43172056--43172089	17	2.1	17	88	5	52	38	0	0	61	0.96
43173762--43173795	17	2.1	17	88	5	52	38	0	0	61	0.96
43180303--43180367	29	2.3	29	94	2	114	46	23	3	27	1.67
43180735--43180791	30	1.9	30	89	7	89	38	10	12	38	1.77
43192747--43192805	27	2.2	27	85	11	77	32	1	3	62	1.21
43192759--43192827	27	2.7	25	81	18	72	30	2	4	62	1.29
43196832--43196877	24	1.9	24	86	0	65	43	17	26	13	1.85
43204854--43205927	44	24.7	45	68	16	279	29	19	22	27	1.98
43204856--43205790	217	4.3	216	90	1	1374	29	19	22	28	1.98
43205683--43205839	40	3.8	40	72	15	129	29	23	21	26	1.99
43205683--43205845	85	1.9	84	86	3	229	30	23	20	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43205896--43206003	44	2.5	44	81	6	121	26	20	21	31	1.98
43205466--43206022	302	1.8	302	92	0	934	29	20	22	27	1.99
43206455--43206486	5	6.4	5	92	0	55	59	18	3	18	1.51
43207234--43207279	24	1.9	24	90	0	74	26	8	0	65	1.21
43207449--43207483	18	1.9	18	88	0	52	40	0	2	57	1.14
43209149--43209205	28	2.0	28	96	0	105	14	15	10	59	1.60
43209151--43209212	28	2.2	28	91	2	97	14	17	8	59	1.58
43210141--43210178	19	2.0	19	85	10	51	76	0	7	15	1.01
43210433--43210522	42	2.1	42	82	8	103	23	15	23	37	1.93
43211000--43211050	21	2.4	21	90	0	75	1	45	17	35	1.60
43217050--43217568	41	12.9	41	95	3	948	33	4	19	42	1.71
43217040--43217596	16	34.5	14	68	20	151	33	3	19	43	1.69
43217601--43217653	18	2.9	18	80	0	70	33	0	11	54	1.36
43220973--43221012	2	20.0	2	94	0	71	47	0	0	52	1.00
43221993--43222550	115	4.9	111	77	8	521	24	24	18	31	1.98
43221993--43222535	229	2.4	225	82	4	622	24	24	18	32	1.98
43222612--43222885	112	2.4	113	81	7	317	26	22	19	30	1.98
43227091--43227508	110	3.8	111	88	3	587	33	17	18	30	1.94
43227963--43227987	2	12.5	2	100	0	50	48	0	0	52	1.00
43228010--43228060	23	2.2	25	82	13	72	52	1	7	37	1.42
43228090--43228136	18	2.6	18	86	0	67	61	6	6	25	1.44
43229839--43230032	104	1.9	104	90	0	307	30	18	18	32	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43240073--43240107	16	2.2	16	94	0	61	42	20	17	20	1.89
43241022--43241439	110	3.8	110	85	4	540	34	17	17	30	1.93
43244669--43244787	7	16.9	7	73	11	64	19	0	37	42	1.57
43244672--43244745	21	3.5	22	85	5	98	18	0	45	35	1.50
43245022--43245080	27	2.2	27	91	8	95	49	0	3	47	1.18
43245151--43245413	134	2.0	134	99	0	517	44	6	9	40	1.61
43245779--43245808	14	2.1	14	100	0	60	0	36	6	56	1.26
43248870--43248995	9	14.0	9	79	11	116	46	18	0	35	1.49
43248856--43248997	47	2.9	47	83	10	171	45	16	0	37	1.48
43248878--43248993	56	2.0	61	82	14	147	46	18	0	34	1.50
43248878--43248993	61	2.0	56	88	8	169	46	18	0	34	1.50
43253132--43253242	43	2.6	43	85	1	152	28	15	24	31	1.95
43258125--43258153	12	2.4	12	100	0	58	34	0	20	44	1.52
43259545--43259586	22	1.9	22	85	0	57	42	4	7	45	1.52
43264624--43264675	27	1.9	27	92	0	86	25	26	9	38	1.86
43272752--43272808	30	1.9	30	82	13	73	61	8	1	28	1.36
43287010--43287071	15	4.2	15	77	6	56	50	1	4	43	1.33
43297840--43297911	34	2.1	34	97	0	135	34	20	6	37	1.80
43303743--43303779	18	2.0	19	89	5	58	29	0	2	67	1.04
43307978--43308007	15	1.9	15	93	6	51	40	0	0	60	0.97
43307979--43308010	14	2.3	14	94	0	55	40	0	0	59	0.97
43308664--43308773	27	4.1	27	88	2	150	19	23	32	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43312275--43312319	6	7.5	6	84	0	54	2	44	28	24	1.66
43312269--43312325	24	2.4	24	84	0	69	1	43	26	28	1.65
43312269--43312325	12	4.8	12	74	8	53	1	43	26	28	1.65
43313903--43313941	16	2.4	16	100	0	78	58	5	0	35	1.20
43314058--43314175	60	2.0	60	89	0	182	53	13	0	33	1.40
43314168--43314229	19	3.2	19	91	8	106	54	14	0	30	1.40
43314163--43314228	21	3.2	21	89	10	109	57	15	0	27	1.38
43314549--43314600	27	1.9	27	84	0	68	19	25	25	30	1.98
43314703--43314741	19	2.1	18	85	4	51	58	0	0	41	0.98
43318011--43318059	21	2.4	21	86	10	66	18	28	10	42	1.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210