genome.fa.s3.2.7.7.80.10.50.1000.120.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr8
Parameters: 2 7 7 80 10 50 1000
Length:  70076365

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   

This is table  120  of  210  ( 25174 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40360267--40360303	16	2.3	16	90	0	56	24	8	16	51	1.71
40360225--40360441	102	2.1	104	82	7	255	27	1	20	49	1.59
40360388--40360449	12	5.5	11	87	11	74	29	1	16	53	1.52
40360395--40360449	12	4.8	12	88	4	78	29	1	16	52	1.54
40360388--40360456	24	3.0	24	87	8	92	27	1	17	53	1.52
40360408--40360462	24	2.5	22	85	8	67	27	1	21	49	1.60
40360635--40360715	9	9.0	9	67	15	51	39	2	16	41	1.61
40360643--40360717	34	2.4	33	86	10	104	41	2	16	40	1.62
40360665--40360720	16	3.3	17	80	9	78	42	3	16	37	1.65
40364044--40364090	14	3.3	14	84	3	58	44	34	0	21	1.52
40364044--40364091	7	6.7	7	78	4	51	43	35	0	20	1.52
40364051--40364093	15	2.9	15	86	3	61	41	37	0	20	1.53
40364455--40365001	114	4.8	113	75	10	436	28	23	18	30	1.97
40364556--40365004	229	2.0	228	83	6	579	27	23	18	30	1.98
40364953--40365107	75	2.1	75	82	0	193	27	21	16	34	1.94
40365350--40365442	40	2.3	40	83	8	111	15	20	23	40	1.90
40376297--40377332	518	2.0	518	100	0	2072	32	18	20	28	1.96
40388083--40388224	42	3.4	42	94	0	239	37	11	25	25	1.90
40401942--40401984	17	2.5	17	85	11	52	16	2	9	72	1.21
40403184--40403307	50	2.5	50	82	0	149	25	23	29	21	1.99
40405499--40405530	9	3.6	9	95	0	55	15	0	6	78	0.95
40406674--40406731	30	1.9	30	85	0	80	24	34	25	15	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40408962--40409039	26	3.0	26	77	5	77	32	10	20	37	1.86
40412812--40412904	42	2.2	42	88	0	141	20	22	33	23	1.97
40420872--40420905	15	2.3	15	89	0	50	47	8	17	26	1.77
40424235--40424289	26	2.1	26	82	0	65	43	0	25	30	1.55
40427385--40427508	50	2.5	50	84	2	151	28	24	27	20	1.99
40427780--40427828	20	2.5	20	81	15	66	57	6	22	14	1.59
40437445--40437477	17	1.9	17	93	0	57	21	12	9	57	1.62
40448647--40448974	29	11.4	28	75	8	175	23	14	22	39	1.91
40448618--40448945	87	3.8	86	75	8	256	24	14	22	38	1.92
40448618--40448996	58	6.6	58	74	7	231	24	14	22	37	1.92
40448790--40448996	29	7.2	29	79	4	96	23	14	23	39	1.91
40458742--40458814	27	2.7	27	78	2	76	32	36	15	15	1.88
40463360--40463421	28	2.2	28	82	0	79	32	11	11	45	1.76
40464886--40464915	15	1.9	16	93	6	53	73	0	0	26	0.84
40471076--40471109	16	2.0	18	88	11	54	41	0	2	55	1.15
40472097--40472123	12	2.2	12	100	0	54	44	0	7	48	1.31
40472441--40472514	21	3.5	21	92	3	114	29	35	9	25	1.88
40473227--40473487	45	5.8	45	87	0	326	38	17	17	26	1.92
40473228--40473487	135	1.9	135	86	0	367	38	16	17	26	1.92
40473227--40473518	45	6.5	45	84	3	277	39	17	17	25	1.92
40473186--40473518	90	3.7	89	79	4	317	40	16	17	25	1.90
40473186--40473510	135	2.4	134	78	3	364	40	17	17	25	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40473502--40473664	46	3.6	46	86	4	213	44	15	22	17	1.86
40483277--40483325	20	2.7	18	77	22	57	51	4	0	44	1.20
40487977--40488010	18	1.9	17	88	5	50	35	11	8	44	1.72
40492415--40492708	159	1.8	159	97	0	561	23	16	17	43	1.88
40494585--40494626	21	2.0	21	100	0	84	38	14	14	33	1.86
40498118--40498183	24	2.8	24	83	4	71	37	10	10	40	1.74
40499319--40499368	24	2.1	24	100	0	100	50	0	12	38	1.40
40503525--40503619	45	2.1	45	84	3	129	26	18	24	30	1.98
40503662--40503705	23	1.9	22	82	17	54	38	0	25	36	1.56
40508484--40508554	37	1.9	37	88	5	108	38	18	16	26	1.92
40511171--40511350	81	2.2	81	84	4	231	14	12	26	46	1.80
40511171--40511331	40	4.0	40	88	1	214	14	13	25	45	1.82
40515485--40515646	50	3.2	50	85	4	193	25	22	33	19	1.97
40522699--40522883	50	3.7	50	88	1	282	25	21	30	22	1.98
40528723--40528779	20	2.9	19	81	2	69	56	3	3	36	1.34
40528709--40528821	19	6.1	18	73	11	77	54	3	1	39	1.28
40528747--40528821	11	6.7	11	69	24	50	57	1	1	40	1.16
40529519--40529547	11	2.7	11	94	5	51	27	3	0	68	1.05
40530122--40530261	31	4.5	31	88	0	208	28	10	17	43	1.81
40539870--40540015	31	4.7	31	81	5	136	30	8	16	45	1.76
40539882--40540015	62	2.2	62	86	4	182	29	6	17	46	1.73
40549738--40549807	31	2.3	31	92	0	113	28	15	12	42	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40552546--40552603	29	2.0	29	83	6	73	51	12	5	31	1.61
40561321--40561378	27	2.2	25	93	6	98	44	6	13	34	1.71
40571300--40571342	21	2.0	22	82	8	54	32	2	20	44	1.65
40571300--40571347	21	2.2	22	81	7	53	35	4	18	41	1.70
40578464--40578513	12	4.2	12	80	9	50	18	22	4	56	1.58
40578779--40578874	49	2.0	49	80	0	111	23	26	23	26	2.00
40587811--40587917	50	2.1	50	96	0	196	19	32	21	26	1.97
40595634--40595679	22	2.1	22	87	0	65	39	47	4	8	1.54
40595646--40595706	11	5.5	11	76	0	59	34	49	4	11	1.61
40597958--40597989	15	2.1	16	94	5	57	34	0	15	50	1.45
40598935--40598984	11	4.6	10	82	7	55	40	50	4	6	1.46
40598936--40598984	22	2.2	22	92	0	80	38	51	4	6	1.46
40604331--40604403	35	2.1	35	100	0	146	38	5	2	53	1.39
40605135--40605371	49	4.8	49	83	3	296	26	15	24	33	1.95
40605135--40605371	99	2.4	99	91	2	368	26	15	24	33	1.95
40608999--40609034	17	2.0	19	89	10	58	16	22	0	61	1.35
40608998--40609037	18	2.3	16	84	16	53	17	20	0	62	1.33
40620527--40620566	11	3.5	11	83	16	55	22	0	0	77	0.77
40621220--40621253	15	2.3	15	100	0	68	41	11	23	23	1.87
40622756--40622798	21	2.0	21	86	0	59	18	18	9	53	1.70
40632258--40632294	2	18.5	2	100	0	74	0	48	0	51	1.00
40634911--40635024	41	2.8	41	86	1	158	21	28	15	34	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40634912--40634978	21	3.2	21	65	12	57	22	29	14	32	1.94
40648491--40648523	15	2.2	15	89	10	50	0	3	9	87	0.63
40651394--40651427	16	2.2	15	89	5	50	55	0	0	44	0.99
40655055--40655094	21	1.9	21	89	0	62	22	25	22	30	1.99
40668062--40668102	20	2.0	20	100	0	82	39	4	14	41	1.67
40681916--40681977	31	2.1	30	82	17	76	45	8	17	29	1.77
40683511--40683540	16	1.9	16	93	6	53	50	20	0	30	1.49
40685503--40685742	50	4.7	50	80	7	227	27	22	27	22	1.99
40687249--40687534	43	6.6	43	87	3	369	34	27	16	20	1.95
40687249--40687534	87	3.3	83	84	7	347	34	27	16	20	1.95
40689829--40689942	57	2.0	57	86	3	158	27	21	14	35	1.93
40690706--40690740	15	2.2	16	90	5	54	34	5	34	25	1.80
40691562--40691598	7	5.1	7	87	6	56	27	51	2	18	1.60
40691507--40691660	71	2.2	71	78	3	157	37	38	1	22	1.65
40691631--40691659	15	1.9	15	100	0	58	44	34	0	20	1.52
40691616--40691665	22	2.3	21	82	3	64	44	32	0	24	1.54
40692308--40692585	41	6.8	41	83	1	333	29	32	19	17	1.96
40702515--40702539	10	2.5	10	100	0	50	60	8	20	12	1.57
40702541--40702653	56	2.0	56	83	8	140	44	8	18	28	1.80
40713640--40713688	16	3.1	16	87	0	71	38	2	34	24	1.67
40713891--40713928	16	2.3	17	86	4	51	55	5	2	36	1.37
40717793--40717820	14	2.0	14	100	0	56	64	0	28	7	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40717796--40717840	19	2.5	18	82	17	58	66	0	26	6	1.16
40718363--40718404	15	2.8	16	82	10	52	73	14	7	4	1.21
40722730--40722763	15	2.3	15	100	0	68	23	14	23	38	1.92
40723837--40723886	23	2.2	23	89	7	75	54	8	24	14	1.66
40724093--40724157	30	2.2	30	83	5	78	63	10	1	24	1.36
40725576--40725625	23	2.2	23	89	7	75	54	8	24	14	1.66
40725832--40725894	30	2.2	28	83	11	74	63	11	1	23	1.36
40725795--40726003	103	2.0	105	95	3	379	48	9	5	35	1.60
40725935--40725999	30	2.2	30	83	5	78	63	10	1	24	1.36
40726178--40726214	11	3.4	11	96	0	65	43	5	0	51	1.24

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210