genome.fa.s3.2.7.7.80.10.50.1000.85.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr8
Parameters: 2 7 7 80 10 50 1000
Length:  70076365

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   

This is table  85  of  210  ( 25174 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29475477--29475606	43	3.0	43	81	10	149	21	19	28	30	1.97
29476729--29476764	15	2.5	14	86	8	54	44	8	0	47	1.33
29478612--29478832	110	2.0	111	99	0	435	38	9	2	49	1.51
29481247--29481284	19	2.0	19	100	0	76	31	5	26	36	1.79
29484320--29484369	21	2.4	22	80	16	61	50	4	16	30	1.63
29490149--29490181	8	4.1	8	96	0	57	54	9	0	36	1.32
29490902--29491016	19	5.6	22	83	9	61	39	17	6	36	1.77
29490938--29491029	19	4.8	19	95	0	166	35	17	9	36	1.83
29490915--29491029	38	2.9	38	89	5	167	37	17	8	36	1.81
29493685--29493722	16	2.4	16	90	0	58	31	0	34	34	1.58
29493701--29493795	45	2.1	44	90	1	145	32	5	27	34	1.79
29493956--29493990	18	2.0	17	88	5	52	54	0	0	45	0.99
29498974--29499899	467	2.0	469	97	1	1768	39	12	13	33	1.83
29510291--29510328	19	2.0	19	94	0	67	31	7	26	34	1.85
29518261--29518297	18	2.1	18	90	5	58	16	27	40	16	1.89
29519581--29519643	31	2.0	31	93	0	108	41	12	14	31	1.83
29520093--29520117	10	2.5	10	100	0	50	16	8	8	68	1.38
29523861--29523957	28	3.5	27	87	8	133	31	22	23	21	1.98
29524293--29524575	27	10.5	27	82	7	310	22	16	17	43	1.88
29524293--29524576	81	3.5	81	84	5	351	22	16	17	43	1.88
29529395--29529533	32	4.4	32	75	0	127	43	18	16	21	1.88
29529690--29529738	24	2.0	24	88	0	71	42	22	8	26	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29529690--29529763	24	3.0	24	78	7	69	39	21	13	25	1.90
29529755--29530033	27	10.4	27	74	11	173	26	18	18	35	1.95
29529798--29530087	54	5.4	54	79	8	261	26	18	19	35	1.95
29529816--29530064	81	3.1	80	83	5	304	27	20	18	33	1.96
29529827--29530077	27	9.3	26	77	6	205	27	19	19	33	1.96
29530824--29530962	32	4.4	32	74	4	120	41	16	17	24	1.90
29531231--29531543	27	11.6	27	79	2	288	25	15	19	38	1.92
29531238--29531490	81	3.1	81	83	2	337	26	16	18	38	1.92
29531238--29531540	81	3.7	81	81	2	322	25	16	19	38	1.92
29532009--29532053	24	1.9	23	86	13	65	24	31	13	31	1.93
29533491--29533557	11	6.4	11	80	16	63	38	4	0	56	1.19
29533514--29533551	19	2.1	19	90	5	60	39	0	0	60	0.97
29533477--29533677	40	5.3	39	73	18	183	32	1	0	64	1.11
29533644--29533669	11	2.4	11	100	0	52	38	0	0	61	0.96
29533653--29533690	19	1.9	19	89	5	58	39	0	0	60	0.97
29533502--29533680	72	2.6	69	82	8	236	34	1	1	63	1.12
29536771--29536886	28	4.1	28	85	0	142	32	24	22	20	1.98
29537249--29537607	27	13.3	27	87	4	465	23	16	18	41	1.90
29539171--29539270	42	2.4	42	93	0	164	26	27	10	37	1.88
29544742--29544971	29	8.0	29	76	5	173	49	8	18	23	1.75
29547896--29548026	65	2.0	65	95	0	235	34	17	12	35	1.87
29552952--29552989	13	2.9	13	85	11	51	52	2	13	31	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29554651--29554689	19	2.1	19	90	0	60	12	2	33	51	1.54
29560283--29560614	27	12.3	26	80	9	278	44	20	18	16	1.87
29560283--29560614	54	6.2	53	81	8	352	44	20	18	16	1.87
29560283--29560615	81	4.1	82	81	5	362	44	20	18	16	1.87
29560794--29560864	26	2.7	26	82	4	72	16	22	22	38	1.93
29584166--29584358	96	2.0	96	87	5	282	40	8	5	45	1.58
29585500--29585536	19	2.0	19	94	5	67	40	0	5	54	1.24
29585500--29585553	19	2.9	18	86	8	65	42	0	5	51	1.25
29586992--29587098	30	3.6	30	79	12	114	28	15	5	49	1.67
29587664--29587713	16	3.2	16	73	18	52	50	0	50	0	1.00
29587777--29587831	19	2.8	20	78	10	69	69	0	27	3	1.05
29587779--29587824	16	2.9	16	78	18	51	71	0	26	2	0.97
29595909--29596575	75	8.7	75	85	7	787	29	16	19	34	1.94
29596307--29596475	86	2.0	86	85	2	232	33	15	17	33	1.92
29597771--29597835	10	6.3	10	75	15	53	75	0	23	1	0.89
29597770--29597832	19	3.2	20	80	13	69	73	0	25	1	0.93
29597791--29597836	12	4.0	12	81	15	53	78	0	21	0	0.76
29597772--29597817	16	2.9	16	78	18	51	71	0	26	2	0.97
29597992--29598132	70	2.0	71	94	4	250	26	38	25	9	1.87
29598202--29598238	16	2.3	16	90	9	58	83	0	16	0	0.64
29598205--29598245	6	7.0	6	78	15	50	80	0	19	0	0.71
29598710--29598889	17	10.2	18	71	19	116	30	12	10	46	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29598899--29598953	17	3.3	16	75	9	56	20	12	20	47	1.82
29604625--29604654	6	5.0	6	100	0	60	0	50	16	33	1.46
29612521--29612549	14	2.1	14	100	0	58	34	0	6	58	1.25
29615500--29615727	89	2.6	88	86	4	289	38	16	11	33	1.85
29617639--29618191	27	20.5	27	85	1	590	35	18	20	25	1.95
29618411--29618466	26	2.2	26	83	0	67	14	23	30	32	1.94
29618457--29618659	32	6.4	32	86	0	255	21	20	20	38	1.94
29618651--29618712	22	2.8	21	70	4	52	17	19	17	45	1.86
29619639--29619697	21	2.8	21	81	2	64	64	1	6	27	1.28
29619663--29619734	9	7.4	9	73	14	63	62	2	5	29	1.32
29619661--29619734	20	3.8	20	76	13	73	63	2	5	28	1.30
29619702--29619745	18	2.3	19	88	7	63	61	6	6	25	1.46
29623364--29623388	13	1.9	13	100	0	50	24	8	0	68	1.16
29623464--29623498	16	2.2	16	89	0	52	22	8	2	65	1.34
29636036--29636293	132	2.0	131	91	2	419	28	17	24	28	1.98
29636424--29636590	50	3.3	50	75	0	172	29	23	21	24	1.99
29636445--29636600	50	3.1	50	77	0	177	32	22	20	25	1.98
29637367--29637410	20	2.4	19	82	14	56	72	2	11	13	1.21
29638538--29638723	94	2.0	95	97	2	356	26	8	19	45	1.78
29646518--29646649	60	2.2	60	95	0	237	33	9	9	47	1.68
29651114--29651269	82	1.9	82	93	0	267	17	12	20	48	1.80
29651609--29651647	6	6.3	6	90	3	51	2	30	10	56	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29652956--29652984	14	2.1	14	100	0	58	37	13	0	48	1.43
29652925--29653039	59	1.9	59	94	0	203	44	13	3	38	1.61
29660854--29662243	695	2.0	695	100	0	2780	24	25	22	27	2.00
29662301--29662334	6	5.7	6	100	0	68	0	17	0	82	0.67
29662301--29662340	18	2.2	18	90	0	62	2	17	2	77	0.99
29667691--29667741	23	2.2	23	89	0	75	41	19	9	29	1.84
29668296--29668346	23	2.2	23	89	0	75	41	19	9	29	1.84
29667584--29668794	605	2.0	605	100	0	2422	43	7	19	30	1.78
29679305--29679351	20	2.5	19	75	6	51	61	0	2	36	1.08
29689149--29689280	25	5.3	26	74	17	113	18	24	19	37	1.93
29689304--29689351	25	1.9	25	86	0	69	22	20	18	37	1.94
29697809--29697861	25	2.1	25	100	0	106	33	22	0	43	1.54
29701119--29701147	2	14.5	2	100	0	58	51	0	0	48	1.00
29701580--29701609	6	4.8	6	92	8	51	66	13	0	20	1.24
29705086--29705125	19	2.2	19	86	13	57	67	0	5	27	1.11
29707028--29707052	13	1.9	13	100	0	50	60	0	0	40	0.97
29723548--29723578	15	2.0	16	93	6	55	25	0	25	48	1.52
29723550--29723678	61	2.1	61	79	4	134	31	1	22	44	1.62
29725338--29725376	9	4.2	9	80	6	51	43	0	0	56	0.99
29725340--29725374	17	2.0	18	94	5	63	42	0	0	57	0.99
29725337--29725383	11	4.6	11	73	26	50	38	2	0	59	1.09
29725443--29725481	20	2.0	20	94	0	69	35	2	0	61	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29733711--29733769	29	2.0	29	100	0	118	50	6	27	15	1.68
29735838--29735909	27	2.5	28	75	8	74	41	2	11	44	1.54
29737244--29737268	13	1.9	13	100	0	50	44	8	16	32	1.76
29737506--29737557	26	2.0	26	100	0	104	30	19	23	26	1.98
29737789--29737840	25	2.0	26	85	3	70	42	3	9	44	1.55
29744836--29744899	7	9.0	7	75	16	60	82	1	15	0	0.74
29744845--29744897	21	2.5	22	84	9	83	83	0	16	0	0.66
29746128--29747067	132	7.2	132	89	2	1292	28	17	22	30	1.97
29746416--29746892	44	10.8	44	67	10	215	29	18	22	29	1.97
29746444--29746848	88	4.6	88	69	8	257	28	19	22	29	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210