genome.fa.s3.2.7.7.80.10.50.1000.95.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr8
Parameters: 2 7 7 80 10 50 1000
Length:  70076365

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   

This is table  95  of  210  ( 25174 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32733612--32733659	18	2.7	18	75	9	53	43	2	14	39	1.57
32737378--32737430	27	1.9	28	92	3	90	43	3	1	50	1.30
32737378--32737430	28	1.9	27	92	3	88	43	3	1	50	1.30
32737456--32737513	30	1.9	30	82	6	73	34	3	1	60	1.24
32737451--32737546	39	2.5	39	83	3	106	29	5	3	62	1.32
32739233--32739279	19	2.4	20	89	3	78	31	8	10	48	1.68
32739280--32739350	36	2.0	36	94	0	124	26	4	18	50	1.65
32739504--32740366	431	2.0	432	99	0	1719	39	17	11	31	1.85
32741685--32741737	27	2.0	27	96	0	97	33	16	11	37	1.85
32745848--32745877	5	6.0	5	96	0	51	0	0	23	76	0.78
32749874--32749997	49	2.5	49	84	6	144	33	8	25	33	1.85
32757354--32757511	78	2.0	78	93	0	271	22	20	15	40	1.91
32757553--32757879	162	2.0	163	93	0	566	27	14	17	40	1.89
32759070--32759105	2	18.0	2	100	0	72	0	0	50	50	1.00
32768334--32768375	20	2.1	20	90	0	66	54	0	2	42	1.13
32780370--32780410	15	2.7	15	88	0	55	51	2	26	19	1.59
32785139--32785186	17	2.6	18	80	16	53	41	16	0	41	1.48
32785304--32785350	24	2.0	24	83	8	60	48	23	2	25	1.62
32788433--32788504	16	4.4	16	75	16	67	55	0	4	40	1.19
32789454--32789493	17	2.4	17	91	0	62	17	22	50	10	1.76
32791201--32791256	26	2.2	26	84	12	71	62	1	0	35	1.06
32791858--32791900	14	3.5	12	82	14	52	32	0	0	67	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32791857--32791899	13	3.3	13	84	12	61	32	0	0	67	0.91
32792177--32792215	17	2.4	17	91	4	62	46	0	0	53	1.00
32796772--32796855	42	2.0	42	88	4	125	46	10	13	29	1.76
32796884--32796914	12	2.6	12	94	0	53	32	9	9	48	1.69
32797059--32797554	248	2.0	249	99	0	985	23	22	13	40	1.89
32802398--32802422	12	2.1	12	100	0	50	24	16	24	36	1.94
32803028--32803514	168	2.9	167	95	1	841	30	8	21	39	1.83
32803929--32803961	15	2.1	16	94	5	59	12	12	24	51	1.73
32815431--32815457	1	27.0	1	100	0	54	0	0	0	100	0.00
32815768--32815963	97	2.0	97	92	0	329	34	14	10	40	1.80
32819561--32819845	140	2.0	141	93	1	491	31	12	19	36	1.89
32824665--32825028	185	2.0	186	86	1	516	28	14	21	35	1.93
32831111--32831226	51	2.3	51	78	0	133	33	28	14	23	1.94
32870221--32870467	50	4.8	50	78	4	219	26	21	28	23	1.99
32880302--32880342	21	2.0	21	90	0	64	14	14	19	51	1.77
32881909--32881938	6	4.8	6	95	4	51	53	0	30	16	1.44
32884471--32884531	26	2.3	26	82	0	77	24	16	16	42	1.88
32886615--32886676	22	2.8	22	80	9	72	70	6	0	22	1.09
32886640--32886706	28	2.4	29	82	12	79	70	1	0	28	0.96
32886642--32886737	18	5.2	17	69	18	59	70	2	3	23	1.12
32887859--32887903	23	1.9	24	86	4	65	6	8	46	37	1.61
32894830--32894988	45	3.6	44	82	4	167	37	27	13	22	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32894869--32895047	45	4.0	45	81	4	193	36	25	12	25	1.92
32899667--32899794	50	2.6	50	79	7	145	31	21	24	23	1.98
32899667--32899803	49	2.8	50	76	8	147	29	21	24	24	1.99
32900005--32900043	20	2.0	20	90	10	62	56	5	23	15	1.59
32902191--32902273	41	2.0	41	90	0	130	48	4	2	44	1.37
32903166--32903223	24	2.5	23	78	15	73	25	0	6	67	1.16
32905465--32905498	16	2.1	16	94	0	59	41	8	32	17	1.80
32907679--32907847	51	3.3	49	79	5	185	31	27	17	23	1.97
32907709--32907847	50	2.7	51	81	3	174	30	27	18	23	1.98
32911622--32911668	24	1.9	25	82	4	60	4	27	4	63	1.31
32913395--32913419	6	4.2	6	100	0	50	48	36	0	16	1.46
32924237--32924292	28	2.1	28	83	12	73	51	0	1	46	1.11
32936076--32936195	41	2.9	41	76	4	125	34	25	22	18	1.96
32958331--32958391	25	2.4	25	97	0	113	24	16	26	32	1.96
32958536--32958565	13	2.3	13	100	0	60	40	10	13	36	1.78
32959233--32959262	10	3.0	10	95	0	51	23	0	26	50	1.50
32970166--32970450	43	6.9	43	80	9	335	25	17	31	25	1.97
32970166--32970450	85	3.5	86	80	12	321	25	17	31	25	1.97
32970325--32970433	37	2.9	37	84	9	141	27	18	33	21	1.96
32971063--32971106	21	2.1	21	91	0	70	40	15	6	36	1.74
32971450--32971706	44	5.8	44	79	5	268	31	24	14	29	1.94
32971524--32971688	89	1.9	87	87	5	242	30	25	14	29	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32971592--32971821	115	2.0	116	93	0	390	34	24	14	26	1.94
32971726--32971936	44	4.8	44	81	11	252	31	24	13	30	1.93
32971726--32971936	89	2.4	88	90	4	336	31	24	13	30	1.93
32971461--32971937	248	1.9	247	87	2	706	31	24	14	29	1.94
32971938--32972926	88	11.2	88	89	0	1429	24	26	23	25	2.00
32974151--32974180	16	1.9	15	93	6	51	0	13	0	86	0.57
32979677--32979732	21	2.8	21	91	5	89	33	19	10	35	1.87
32979945--32979999	20	2.8	20	83	2	67	60	16	14	9	1.59
32981691--32981738	24	2.0	24	100	0	96	37	8	0	54	1.31
32981887--32982058	4	42.8	4	74	17	101	69	0	30	0	0.88
32981876--32982015	34	4.2	30	72	19	93	67	0	32	0	0.91
32981922--32982065	44	3.4	43	80	17	183	70	0	29	0	0.87
32981921--32982034	49	2.4	48	83	5	140	70	0	29	0	0.88
32981889--32982091	39	5.4	38	79	14	167	69	0	30	0	0.89
32982024--32982092	32	2.2	32	82	10	90	72	0	27	0	0.85
32982628--32982669	22	1.9	22	95	0	75	42	9	0	47	1.36
32987981--32988183	63	3.2	63	97	1	370	47	9	5	37	1.60
32993323--32993378	28	2.0	29	82	10	71	39	0	0	60	0.97
32994789--32994831	14	3.4	13	84	12	54	55	0	2	41	1.12
32998878--32998948	25	2.9	25	81	4	83	35	19	23	21	1.96
32999010--32999074	25	2.6	25	77	0	67	32	23	26	18	1.97
33002894--33003128	119	2.0	119	94	1	418	31	18	10	39	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33003819--33003877	23	2.6	23	89	5	84	16	16	28	37	1.92
33003835--33003881	23	2.0	23	100	0	94	12	17	31	38	1.87
33005081--33005124	20	2.2	20	88	8	63	59	4	4	31	1.38
33021135--33021167	6	5.5	6	100	0	66	84	0	15	0	0.61
33033948--33034330	106	3.6	104	87	6	533	33	14	12	40	1.83
33033948--33034334	107	3.7	105	88	5	543	33	14	12	40	1.83
33033948--33034334	211	1.8	209	90	3	625	33	14	12	40	1.83
33034264--33034406	72	2.0	72	88	0	214	34	8	8	48	1.63
33036139--33036172	6	5.5	6	92	3	50	61	0	23	14	1.33
33037563--33037593	12	2.6	12	94	0	53	9	38	16	35	1.81
33042792--33042856	22	2.8	24	77	11	64	38	15	13	32	1.87
33043370--33043451	42	2.0	42	87	0	119	17	36	23	23	1.94
33043388--33043481	42	2.2	42	81	3	109	18	37	21	23	1.94
33044091--33044141	20	2.4	22	83	9	61	76	3	15	3	1.08
33049328--33049481	43	3.7	42	72	9	127	27	16	28	27	1.97
33050104--33050238	25	5.5	25	64	7	89	28	15	14	42	1.86
33050085--33050285	48	4.2	48	87	2	271	27	16	14	40	1.88
33056025--33056075	8	5.6	9	76	19	52	56	0	11	31	1.35
33056025--33056075	19	2.8	17	75	18	50	56	0	11	31	1.35
33057734--33057817	25	3.4	25	68	12	75	26	15	15	42	1.86
33057716--33057864	48	3.1	48	88	3	212	26	16	15	42	1.87
33064890--33064920	9	3.4	9	90	0	53	25	12	22	38	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33064973--33065009	18	2.1	18	94	0	65	51	13	5	29	1.63
33065030--33065082	23	2.3	23	100	0	106	28	35	0	35	1.58
33065255--33065314	30	2.0	31	83	9	79	20	38	0	41	1.52
33065666--33065691	5	5.2	5	100	0	52	23	19	19	38	1.93
33067761--33067812	25	2.1	25	100	0	104	15	26	15	42	1.87
33069612--33069649	16	2.4	16	86	0	58	28	34	2	34	1.71
33069857--33069926	16	4.4	16	92	0	95	32	34	0	32	1.58
33072037--33072084	20	2.4	20	75	0	51	39	0	18	41	1.51
33072066--33072144	26	3.0	26	85	3	97	31	2	20	45	1.64
33072116--33072177	20	3.0	20	80	2	61	41	6	11	40	1.66

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210