genome.fa.s3.2.7.7.80.10.50.1000.121.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr8
Parameters: 2 7 7 80 10 50 1000
Length:  70076365

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   

This is table  121  of  210  ( 25174 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40726200--40726255	27	2.0	27	89	3	85	26	0	3	69	1.04
40729788--40729824	3	12.3	3	100	0	74	67	0	0	32	0.91
40729837--40729873	12	2.9	13	84	15	51	72	0	27	0	0.84
40731440--40732401	483	2.0	483	100	0	1924	30	14	20	34	1.92
40734331--40734362	11	2.8	11	95	4	55	43	0	0	56	0.99
40735837--40735875	18	2.2	17	86	4	51	76	7	5	10	1.13
40740809--40740868	27	2.3	26	83	11	77	30	8	6	55	1.55
40741218--40741424	103	2.0	104	97	2	391	53	9	7	29	1.61
40743368--40743427	26	2.3	26	85	2	86	45	16	11	26	1.82
40745405--40745584	87	2.1	87	82	6	222	43	11	9	35	1.73
40745653--40745690	20	1.9	20	88	0	58	31	7	15	44	1.75
40745752--40745856	30	3.6	29	71	14	81	69	0	1	27	1.05
40745804--40745866	19	3.3	19	75	6	56	66	1	1	30	1.10
40745753--40745894	10	14.3	10	66	19	66	66	1	1	30	1.09
40745823--40745894	19	3.7	19	75	8	65	62	2	1	33	1.18
40746175--40746272	52	1.9	51	82	14	121	36	5	3	55	1.38
40746579--40746744	88	1.9	89	83	3	219	33	9	19	36	1.85
40751692--40751838	43	3.5	41	78	7	125	27	17	24	30	1.97
40752672--40752784	55	2.0	56	98	1	219	28	15	19	37	1.92
40754211--40754357	43	3.5	41	78	7	125	27	17	24	30	1.97
40755191--40755236	24	1.9	24	100	0	92	45	4	15	34	1.66
40756382--40756423	21	2.0	22	90	4	68	30	4	26	38	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40763845--40763887	17	2.5	17	84	0	50	20	11	30	37	1.89
40767194--40767385	43	4.5	43	85	2	260	23	28	18	29	1.98
40767693--40767718	5	5.2	5	100	0	52	0	38	19	42	1.51
40773840--40773877	20	1.9	20	94	0	67	57	7	0	34	1.28
40774187--40774384	107	1.9	107	81	4	247	45	32	1	20	1.60
40774437--40774485	14	3.6	13	81	15	55	51	24	2	22	1.59
40774449--40774485	13	2.8	13	87	4	56	51	27	0	21	1.48
40775058--40775223	87	1.9	88	82	1	208	24	18	25	31	1.98
40779098--40779174	39	2.0	39	89	0	118	20	22	32	24	1.98
40780520--40780640	17	7.0	17	74	6	82	18	19	26	36	1.94
40784899--40784944	24	1.9	24	82	8	58	41	19	13	26	1.88
40797845--40797881	10	3.8	10	86	13	51	45	5	0	48	1.25
40797845--40797902	19	3.0	19	80	16	66	44	10	0	44	1.38
40797842--40797888	23	2.0	23	84	8	60	44	8	0	46	1.33
40798938--40798971	15	2.3	15	89	0	50	29	2	26	41	1.70
40805624--40805689	13	5.1	13	78	14	82	31	4	27	36	1.77
40805624--40805689	26	2.5	26	97	0	123	31	4	27	36	1.77
40813135--40813167	17	1.9	17	93	0	57	21	15	30	33	1.94
40815486--40815510	7	3.6	7	100	0	50	0	24	0	76	0.80
40838327--40838374	20	2.5	19	82	3	60	41	8	25	25	1.83
40840143--40840711	70	8.1	69	77	8	485	33	26	16	23	1.95
40840143--40840681	140	3.9	140	81	4	624	33	26	17	22	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40840174--40840708	210	2.6	210	81	4	625	34	26	16	23	1.95
40844544--40844582	21	2.0	20	90	10	62	58	0	0	41	0.98
40844590--40844623	7	5.0	7	89	7	52	82	0	0	17	0.67
40844597--40844623	13	2.1	13	100	0	54	85	0	0	14	0.61
40844995--40845062	31	2.3	28	85	7	82	67	2	1	27	1.13
40846351--40846415	23	2.8	24	75	17	66	40	1	3	55	1.25
40846362--40846421	23	2.5	25	76	15	72	40	0	1	58	1.08
40846363--40846424	22	2.8	23	81	13	60	40	0	1	58	1.08
40847383--40847439	21	2.7	21	86	5	71	33	17	28	21	1.96
40852562--40852610	22	2.3	20	80	13	55	28	4	2	65	1.22
40855884--40856249	42	8.6	42	74	13	302	31	25	18	24	1.97
40855877--40856249	86	4.4	83	75	14	357	31	26	17	24	1.97
40855877--40856246	128	2.9	128	98	0	713	31	26	17	24	1.97
40858677--40858717	18	2.3	18	91	0	64	29	41	14	14	1.86
40864196--40864220	12	2.1	12	100	0	50	60	24	0	16	1.36
40864449--40864494	21	2.2	21	85	14	60	39	2	6	52	1.40
40864973--40865301	164	2.0	165	99	0	651	34	9	5	51	1.57
40867167--40867276	37	3.0	37	79	0	112	19	19	23	38	1.93
40874029--40874063	2	17.5	2	100	0	70	48	0	0	51	1.00
40874603--40874677	29	2.5	30	79	14	75	45	9	18	26	1.80
40874958--40875214	128	2.0	129	99	0	507	44	5	10	40	1.61
40879344--40879387	22	2.1	20	87	8	61	22	6	4	65	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40879413--40879475	30	2.1	30	94	5	110	28	3	11	57	1.49
40879570--40879609	20	2.0	20	90	0	62	27	10	12	50	1.72
40879555--40879621	34	1.9	35	90	3	109	31	8	13	46	1.74
40879595--40879704	55	2.0	55	98	0	211	34	6	19	40	1.77
40879657--40879741	32	2.6	31	76	9	89	25	10	18	44	1.82
40879916--40880042	40	3.2	39	65	19	109	47	12	11	29	1.76
40879917--40880090	79	2.2	79	96	3	321	47	13	9	29	1.75
40880046--40880189	72	2.0	72	93	0	243	45	18	8	27	1.78
40886323--40886355	12	2.8	12	95	0	57	54	6	39	0	1.25
40887782--40888090	153	2.0	156	89	3	480	21	26	22	29	1.99
40900330--40900405	39	1.9	39	100	0	152	36	15	9	38	1.80
40904835--40904958	59	2.1	61	90	3	198	26	24	6	42	1.78
40904835--40904958	30	4.1	30	90	3	196	26	24	6	42	1.78
40908736--40908779	21	2.2	20	83	4	52	25	4	6	63	1.38
40915189--40915254	30	2.2	31	83	8	82	39	1	12	46	1.50
40916406--40916435	3	10.0	3	100	0	60	66	0	0	33	0.92
40922261--40922439	95	1.9	95	100	0	358	50	5	7	35	1.55
40922939--40922973	9	3.7	10	88	11	56	71	5	0	22	1.07
40925391--40925417	6	4.5	6	100	0	54	14	0	66	18	1.25
40925357--40925468	51	2.2	51	91	0	179	20	0	51	26	1.53
40925441--40925486	6	7.7	6	95	0	83	17	0	67	15	1.24
40929020--40929080	28	2.2	28	85	11	81	60	1	4	32	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40929846--40929882	15	2.4	16	86	13	51	78	0	5	16	0.93
40930687--40931286	44	13.7	43	78	6	494	24	24	20	29	1.99
40930602--40931286	175	3.9	175	88	1	874	25	24	20	29	1.99
40930687--40931288	131	4.6	131	85	4	653	24	24	20	29	1.99
40931601--40931817	107	2.0	107	98	0	416	28	23	14	33	1.94
40932562--40932818	86	3.1	80	81	10	218	22	17	33	26	1.96
40932598--40932818	43	5.1	43	88	0	334	21	18	33	26	1.96
40932912--40932954	22	2.0	22	95	0	77	41	27	20	9	1.83
40934064--40934088	13	1.9	13	100	0	50	52	8	0	40	1.31
40936190--40936818	316	2.0	315	92	0	1051	31	19	19	29	1.96
40937797--40937849	16	3.3	15	77	15	52	75	1	9	13	1.12
40938642--40938671	5	6.0	5	92	0	51	0	16	0	83	0.65
40955958--40956027	29	2.5	28	75	11	81	35	0	42	21	1.53
40957889--40957928	20	2.0	20	90	0	62	27	10	12	50	1.72
40957868--40957944	14	5.0	15	71	20	52	33	9	15	41	1.79
40958014--40958090	20	3.8	20	73	13	86	33	3	3	58	1.35
40958212--40958242	15	2.1	15	100	0	62	25	0	35	38	1.56
40960512--40960569	27	2.1	27	93	0	98	25	8	29	36	1.86
40960825--40960850	13	2.0	13	100	0	52	46	15	15	23	1.83
40961007--40961036	14	2.1	14	93	0	51	36	10	43	10	1.72
40961059--40961104	24	1.9	24	95	0	83	36	4	45	13	1.63
40962314--40962402	45	2.0	44	87	10	128	32	4	24	38	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40965120--40965153	12	2.8	12	100	0	68	61	26	5	5	1.42
40965592--40965650	20	3.1	19	79	11	59	59	3	25	11	1.48
40965601--40965650	17	2.7	18	80	17	57	62	4	26	8	1.41
40965603--40965650	22	2.2	21	85	10	62	62	4	25	8	1.41
40967433--40967488	17	3.3	17	79	0	67	50	28	7	14	1.69
40969372--40969434	25	2.5	25	81	0	72	30	22	30	17	1.96
40976134--40976169	17	2.1	17	89	0	54	13	36	30	19	1.91
40981343--40981401	26	2.3	26	87	0	82	35	10	13	40	1.78
40985727--40985760	17	2.0	17	88	0	50	2	17	17	61	1.46
41000759--41000804	15	3.1	14	87	6	65	34	26	26	13	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210