genome.fa.s3.2.7.7.80.10.50.1000.192.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr8
Parameters: 2 7 7 80 10 50 1000
Length:  70076365

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   

This is table  192  of  210  ( 25174 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63698104--63698757	42	15.4	42	85	6	818	15	28	35	20	1.93
63698104--63698757	85	7.7	84	85	4	825	15	28	35	20	1.93
63698104--63698757	127	5.1	126	84	7	820	15	28	35	20	1.93
63705824--63705902	24	3.3	24	92	0	131	8	43	31	16	1.79
63705861--63705902	13	3.4	13	74	12	52	9	45	30	14	1.77
63706001--63707689	85	19.9	84	83	4	1949	15	26	36	20	1.93
63715385--63715931	42	12.9	42	84	2	675	16	27	35	20	1.94
63715385--63715931	85	6.5	85	85	2	708	16	27	35	20	1.94
63715385--63715931	127	4.3	126	84	2	693	16	27	35	20	1.94
63723509--63723553	21	2.1	21	100	0	90	40	15	26	17	1.90
63724713--63725005	43	6.9	41	82	7	300	14	27	36	20	1.92
63724716--63725005	86	3.4	84	84	5	359	14	27	36	21	1.92
63724716--63725005	129	2.3	127	83	4	361	14	27	36	21	1.92
63729692--63729797	42	2.5	43	78	3	115	16	32	34	16	1.91
63730282--63730406	43	2.9	42	88	7	180	16	29	34	20	1.94
63731154--63731320	42	3.9	42	86	5	228	17	30	32	18	1.95
63731549--63731603	23	2.4	23	93	0	101	14	30	27	27	1.95
63731707--63733529	42	42.3	42	71	11	982	17	27	34	20	1.95
63731702--63733529	85	21.2	85	72	10	926	17	27	34	20	1.95
63731707--63733529	127	14.1	127	72	11	1021	17	27	34	20	1.95
63732665--63733546	170	5.2	170	85	2	1105	15	27	36	20	1.93
63732664--63733546	255	3.5	253	83	4	1066	15	27	36	20	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63738092--63738186	48	2.0	48	91	0	154	43	22	15	18	1.88
63738484--63738555	36	2.0	36	89	2	110	30	27	9	31	1.89
63743585--63743656	36	2.0	36	89	7	112	31	26	8	33	1.86
63746590--63746714	43	2.9	43	83	1	153	14	30	39	16	1.88
63747231--63747398	42	4.0	42	86	5	230	17	30	33	19	1.94
63747234--63747391	85	1.8	86	87	1	237	16	29	33	20	1.94
63747611--63747688	24	3.3	24	77	10	88	11	37	29	21	1.89
63747629--63747684	23	2.4	23	87	3	76	14	35	26	23	1.93
63747788--63748457	42	16.0	42	85	5	876	16	29	34	20	1.94
63747788--63748457	85	8.0	84	85	5	876	16	29	34	20	1.94
63747783--63748457	127	5.4	127	85	5	899	16	29	34	20	1.94
63748531--63748557	14	1.9	14	100	0	54	11	29	37	22	1.89
63759777--63759817	20	2.0	22	85	9	59	17	9	12	60	1.57
63764515--63764562	25	2.0	24	87	4	69	2	4	39	54	1.32
63765158--63765202	21	2.1	21	100	0	90	40	15	26	17	1.90
63774642--63774736	48	2.0	48	91	0	154	43	20	15	21	1.88
63775034--63775105	36	2.0	36	91	2	119	31	27	8	31	1.86
63784094--63784262	43	4.0	42	75	10	137	17	28	34	18	1.94
63784738--63784903	42	3.9	42	86	5	226	18	30	31	19	1.96
63785117--63785164	23	2.1	23	92	0	78	8	33	35	22	1.84
63785222--63785816	42	14.0	42	83	4	710	16	28	34	20	1.95
63785222--63785816	85	7.0	85	85	2	732	16	28	34	20	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63785284--63785814	212	2.5	208	87	3	749	16	27	35	20	1.94
63785890--63785915	13	2.0	13	100	0	52	7	30	38	23	1.83
63786060--63786100	20	2.0	22	85	9	59	17	9	12	60	1.57
63791193--63791240	24	2.0	23	88	4	69	10	31	33	25	1.89
63791203--63791248	23	2.0	24	86	4	67	13	36	28	21	1.91
63791311--63791762	43	10.6	42	81	4	514	15	27	36	20	1.93
63791321--63791762	212	2.1	213	85	3	595	15	27	36	21	1.93
63791311--63791788	85	5.6	85	82	3	552	15	26	37	20	1.92
63791311--63791788	42	11.3	42	80	4	503	15	26	37	20	1.92
63792045--63793122	85	12.7	85	84	1	1306	16	26	36	20	1.93
63792046--63793139	340	3.2	339	85	3	1489	16	26	36	20	1.93
63793653--63793820	43	3.9	43	78	4	117	17	32	35	15	1.91
63793715--63793826	42	2.6	43	82	1	127	17	34	32	15	1.91
63793700--63793826	43	3.0	42	80	2	137	17	34	31	16	1.92
63794294--63794460	42	3.9	42	85	5	228	17	31	31	18	1.95
63794296--63794453	85	1.8	86	87	1	237	17	31	32	19	1.95
63796177--63796329	43	3.6	43	88	2	238	15	28	33	22	1.94
63797769--63797940	43	4.0	43	83	3	168	15	34	34	15	1.88
63798409--63798575	42	3.9	42	86	5	228	17	31	31	18	1.95
63798411--63798568	85	1.8	86	87	4	239	17	31	32	19	1.95
63803871--63803921	24	2.1	24	88	0	75	13	45	23	17	1.84
63804048--63804726	42	16.0	42	84	2	822	16	28	34	20	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63804048--63804726	85	8.0	85	84	1	837	16	28	34	20	1.94
63804048--63804726	127	5.3	127	82	3	787	16	28	34	20	1.94
63804048--63808738	255	18.2	254	71	10	1226	17	26	34	21	1.95
63804944--63805009	23	2.8	24	83	4	98	9	34	31	24	1.87
63805109--63808732	42	85.0	43	73	7	2248	16	25	34	21	1.94
63805109--63808738	85	42.6	84	73	7	2136	16	25	34	21	1.94
63805113--63808732	170	21.2	169	74	7	2357	16	25	34	21	1.94
63805110--63807655	722	3.5	720	84	4	2902	17	25	35	21	1.95
63809206--63809541	42	7.9	42	75	4	246	18	26	34	20	1.96
63809207--63809374	85	2.0	85	81	0	201	18	27	32	21	1.97
63810060--63811879	42	42.4	42	74	7	1296	17	26	34	21	1.95
63810061--63811879	85	21.2	84	75	7	1264	17	26	34	21	1.95
63810060--63811299	127	9.7	127	74	8	887	17	26	35	21	1.95
63811433--63811848	127	3.3	125	76	9	360	18	27	33	20	1.96
63822076--63822140	33	2.0	33	96	0	121	23	35	10	30	1.89
63823905--63823954	7	7.3	7	95	4	93	56	14	0	30	1.39
63824502--63824544	20	2.2	20	100	0	86	27	20	9	41	1.83
63831173--63831367	42	4.6	41	73	8	151	16	33	33	16	1.91
63831393--63837564	85	72.6	85	75	7	3028	19	30	30	19	1.97
63831389--63838256	128	53.9	127	72	8	2772	19	30	30	19	1.97
63831934--63838256	255	24.8	254	74	8	2046	19	30	30	19	1.97
63831812--63833911	596	3.5	592	78	6	1705	19	30	30	19	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63832405--63833654	468	2.7	467	79	7	1238	19	30	30	19	1.96
63833168--63833782	212	2.9	212	77	6	492	19	29	31	19	1.96
63831366--63837564	170	36.5	169	76	7	3512	19	30	30	19	1.96
63833683--63833826	43	3.3	43	78	10	132	21	31	27	19	1.97
63834489--63834638	75	2.0	75	86	2	212	20	34	30	14	1.93
63831366--63837564	341	18.2	335	74	7	3136	19	30	30	19	1.96
63831491--63837315	426	13.7	420	75	8	3290	19	30	30	19	1.96
63837178--63837781	214	2.8	211	79	6	499	18	29	30	21	1.97
63838067--63838251	43	4.4	42	72	14	112	20	32	27	19	1.97
63834815--63838248	85	40.3	85	76	9	797	19	30	30	19	1.97
63847505--63850505	85	35.2	85	72	8	703	19	30	30	19	1.97
63847505--63850731	43	75.7	43	71	7	1571	19	30	30	19	1.97
63848094--63848232	42	3.3	41	72	12	113	16	32	31	19	1.94
63847513--63848363	426	2.0	426	79	3	908	19	29	30	20	1.97
63848272--63848582	171	1.8	171	85	1	435	19	32	29	18	1.96
63848251--63848703	214	2.1	213	85	2	613	19	31	29	18	1.96
63847797--63850635	170	16.6	170	71	9	807	19	30	30	19	1.97
63848622--63848801	42	4.3	42	74	5	139	20	30	31	18	1.96
63848024--63849615	298	5.3	295	76	6	1185	19	30	30	19	1.97
63847539--63850674	128	24.5	127	72	7	1540	19	30	30	19	1.97
63849722--63850732	383	2.6	382	80	5	1259	20	30	29	19	1.97
63848094--63850717	85	30.8	85	72	8	1394	19	30	30	19	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63853597--63853724	43	3.0	42	85	8	177	20	32	30	17	1.95
63853731--63864975	85	132.4	84	72	8	4632	19	30	30	20	1.97
63853783--63854179	212	1.9	212	83	4	514	19	29	30	19	1.97
63853723--63862753	383	23.6	382	73	11	1282	19	30	30	20	1.97
63854972--63856225	212	5.9	212	73	8	570	18	30	30	20	1.97
63856486--63857272	171	4.7	170	75	10	631	18	30	31	20	1.96
63857034--63864975	43	186.6	43	72	7	4471	19	30	30	19	1.97
63857708--63859746	766	2.7	759	83	4	2345	19	30	30	19	1.97
63859674--63860074	212	1.9	212	84	3	547	17	30	31	19	1.96
63853723--63864885	298	37.4	297	73	9	3888	19	30	30	20	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210