Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr8
Parameters: 2 7 7 80 10 50 1000
Length:  70076365

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   

This is table  109  of  210  ( 25174 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
36831390--36831447
29
1.9
29
86
6
80
36
0
12
51
1.39
36837849--36837890
13
2.9
15
76
23
54
33
0
0
66
0.92
36839341--36839386
11
4.1
11
78
15
58
67
2
2
28
1.14
36839337--36839380
23
1.9
23
95
0
79
63
4
2
29
1.26
36839754--36839800
3
15.7
3
93
0
76
36
34
0
29
1.58
36848556--36848595
14
2.7
15
84
11
55
57
12
2
27
1.48
36857708--36857767
30
2.0
30
87
3
86
30
20
5
45
1.72
36864598--36865007
124
3.3
123
87
3
597
32
17
20
30
1.95
36872524--36872773
124
2.0
124
99
0
491
44
9
4
41
1.57
36888062--36888090
13
2.2
13
100
0
58
34
6
13
44
1.71
36893299--36893394
3
31.0
3
83
6
111
38
3
0
58
1.14
36893306--36893408
51
2.0
51
100
0
206
43
3
0
52
1.19
36894871--36895012
36
4.0
36
79
5
137
58
9
27
4
1.49
36894909--36894965
15
3.4
15
70
25
51
57
8
26
7
1.54
36894867--36895012
18
8.2
19
70
14
73
58
8
27
4
1.48
36898543--36898600
15
3.8
15
73
13
55
70
1
0
27
0.97
36898557--36898599
18
2.3
19
81
14
54
74
0
0
25
0.82
36907442--36907514
27
2.6
29
80
12
89
69
8
9
12
1.35
36908430--36908470
7
6.0
7
94
5
75
70
0
14
14
1.16
36908430--36908470
13
3.0
14
92
7
75
70
0
14
14
1.16
36908430--36908470
20
2.0
20
100
0
82
70
0
14
14
1.16
36909701--36909885
44
4.2
44
67
8
142
30
20
23
25
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
36909694--36910411
131
5.5
131
89
2
906
30
20
24
25
1.98
36912437--36912470
18
2.0
17
88
11
52
41
11
0
47
1.40
36912424--36912470
16
2.8
17
82
17
55
42
12
0
44
1.42
36912429--36912466
18
2.2
17
86
13
51
44
10
0
44
1.38
36916169--36916237
2
35.0
2
94
2
122
52
0
47
0
1.00
36917403--36917666
57
4.8
57
76
11
262
21
4
46
27
1.70
36917431--36917653
48
4.3
48
70
20
151
21
4
47
27
1.69
36917403--36917667
105
2.4
109
81
9
299
21
4
46
27
1.69
36917588--36917633
24
2.0
23
91
4
74
15
0
54
30
1.41
36917642--36917684
18
2.4
18
92
0
68
20
0
53
25
1.46
36920573--36920632
29
2.0
30
81
9
70
40
0
5
55
1.22
36920752--36920829
4
19.0
4
84
10
95
48
1
2
47
1.23
36920753--36920840
46
1.9
46
97
0
167
45
2
4
47
1.35
36925324--36925353
4
7.5
4
100
0
60
50
23
0
26
1.50
36925441--36925468
5
5.6
5
100
0
56
39
0
0
60
0.97
36927884--36927944
31
2.0
31
87
6
88
36
11
4
47
1.61
36933012--36933037
13
2.0
13
100
0
52
30
15
7
46
1.74
36934867--36934891
11
2.3
11
100
0
50
84
0
0
16
0.63
36935322--36935403
21
3.9
19
77
15
74
26
3
4
64
1.30
36943086--36943134
24
2.0
25
84
4
64
44
4
2
48
1.33
36944913--36945072
79
2.0
80
98
1
313
53
6
8
31
1.58
36945906--36945945
11
3.6
11
82
0
53
22
15
5
57
1.57
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
36950359--36950406
21
2.2
22
81
3
53
62
0
10
27
1.27
36958455--36958831
124
3.0
124
91
1
594
29
15
22
32
1.95
36959900--36959938
19
2.1
19
95
0
69
35
12
23
28
1.91
36962103--36962267
23
7.2
24
79
15
147
26
0
23
50
1.50
36962103--36962270
91
1.8
92
88
3
259
26
0
24
49
1.51
36962326--36962752
23
18.8
23
77
12
418
26
0
23
49
1.54
36962326--36962752
45
9.4
45
78
11
324
26
0
23
49
1.54
36962327--36962752
113
3.7
109
80
9
419
26
0
23
49
1.54
36962348--36962751
68
6.0
67
80
11
393
26
0
24
49
1.54
36962795--36962842
25
1.9
25
95
0
87
41
12
0
45
1.42
36963784--36963808
7
3.6
7
100
0
50
60
12
0
28
1.32
36963979--36964016
20
1.9
20
84
10
51
55
7
2
34
1.43
36970993--36971020
3
9.3
3
100
0
56
32
0
0
67
0.91
36975186--36975242
6
9.8
6
81
7
55
68
8
5
17
1.35
36975210--36975257
15
3.1
15
79
5
51
77
4
4
14
1.08
36976238--36976296
7
8.7
7
88
7
95
67
1
15
15
1.31
36976238--36976296
20
2.9
21
92
5
95
67
1
15
15
1.31
36976238--36976296
27
2.2
27
96
0
109
67
1
15
15
1.31
36977511--36977687
87
2.0
87
88
0
264
30
20
24
24
1.99
36977877--36978853
44
22.7
44
67
12
336
30
18
21
29
1.97
36977884--36978923
85
12.1
85
68
12
349
30
18
21
29
1.97
36978008--36978290
129
2.2
129
89
2
417
30
19
20
28
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
36978316--36978389
37
2.0
37
89
0
112
25
18
24
31
1.98
36978060--36978510
212
2.1
213
83
4
574
30
17
21
29
1.97
36978314--36978768
129
3.6
129
88
3
654
30
18
21
29
1.97
36978604--36978923
175
1.8
175
89
1
498
30
20
20
29
1.97
36979797--36979838
20
2.0
21
86
4
59
21
4
0
73
1.01
36979856--36979890
14
2.5
14
90
0
52
40
0
11
48
1.39
36991857--36991900
19
2.4
18
81
7
54
70
2
2
25
1.10
36991857--36991900
18
2.5
17
85
10
61
70
2
2
25
1.10
36993874--36993939
25
2.7
25
81
11
66
22
21
3
53
1.60
36993945--36994105
33
4.8
32
71
8
124
28
26
15
29
1.96
36993933--36994236
101
3.0
101
94
0
511
28
25
14
31
1.95
36997894--36997926
12
2.8
12
90
4
50
36
3
9
51
1.49
36997785--36997996
114
1.8
113
93
4
363
40
4
13
41
1.64
36998334--36998483
41
3.7
41
88
0
219
27
18
28
26
1.98
37002264--37002315
25
2.1
25
96
0
95
19
26
9
44
1.81
37007394--37007436
18
2.4
18
88
0
59
25
11
18
44
1.84
37008085--37008110
2
13.0
2
100
0
52
50
0
0
50
1.00
37013010--37013044
14
2.5
13
90
9
52
80
0
0
20
0.72
37013919--37013954
17
2.1
17
89
0
54
8
8
8
75
1.21
37056029--37056148
44
2.7
44
76
5
125
29
21
26
22
1.99
37056117--37056234
44
2.7
45
76
6
116
23
18
27
29
1.98
37057836--37057860
9
2.8
9
100
0
50
24
0
8
68
1.16
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37060304--37060338
12
2.9
12
82
0
52
68
2
2
25
1.17
37061806--37062231
50
8.5
50
74
7
364
23
19
24
32
1.98
37061858--37062261
100
4.0
100
93
0
684
23
19
25
32
1.98
37062367--37062456
44
2.0
44
82
0
108
26
25
21
26
1.99
37062657--37062964
87
3.5
88
88
3
444
22
25
24
28
1.99
37062773--37062910
44
3.2
44
64
17
115
26
26
23
24
2.00
37064116--37064163
7
7.0
7
90
4
80
14
16
0
68
1.21
37064122--37064160
20
2.0
20
100
0
78
15
17
0
66
1.25
37065630--37065757
19
7.2
17
69
10
78
40
10
11
36
1.77
37065630--37065817
17
10.2
18
69
14
91
40
10
12
36
1.78
37065630--37065818
36
5.1
37
74
14
124
40
10
12
36
1.78
37065665--37065818
19
8.3
18
70
16
91
38
10
12
38
1.77
37066703--37066765
27
2.3
29
86
8
87
1
15
4
77
1.01
37066700--37066770
17
3.9
19
85
3
78
1
16
5
76
1.05
37067175--37067241
31
2.1
32
88
2
100
49
2
19
28
1.63
37067515--37068814
76
16.9
76
91
3
1569
36
20
15
27
1.93
37067438--37068812
382
3.6
381
86
6
1644
36
20
15
27
1.93
37069664--37069751
6
14.8
6
78
13
85
0
3
14
81
0.81
37069670--37069752
7
11.7
7
73
16
64
0
2
15
81
0.78
37069661--37069753
16
5.8
15
80
10
87
0
3
13
82
0.78
37075455--37075552
18
5.5
17
75
14
65
39
10
11
38
1.75
37075478--37075539
19
3.4
19
76
10
58
48
12
9
29
1.73
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37075450--37075527
33
2.3
34
82
4
86
43
10
10
35
1.73
37075488--37075566
38
2.1
39
82
2
97
39
8
12
39
1.75
37075455--37075608
17
8.3
18
71
18
93
38
9
13
38
1.78
37075792--37075839
18
2.6
19
90
6
73
0
16
6
77
0.97
37076784--37076890
54
2.0
54
86
0
151
29
16
22
30
1.96
37081214--37081295
12
7.0
12
70
9
62
65
3
6
24
1.31
37086265--37086359
4
23.8
4
76
12
61
67
0
9
23
1.19
37087979--37088083
51
2.1
51
85
0
138
29
16
17
37
1.91
37087873--37088348
44
10.5
44
75
10
323
29
17
18
34
1.94
37087941--37088308
95
3.9
94
79
6
338
29
17
17
35
1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210