genome.fa.s3.2.7.7.80.10.50.1000.138.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr8
Parameters: 2 7 7 80 10 50 1000
Length:  70076365

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   

This is table  138  of  210  ( 25174 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45740960--45741036	39	2.0	39	89	0	118	29	2	57	10	1.46
45742130--45742178	25	2.0	25	92	8	82	12	8	20	59	1.58
45742142--45742183	12	3.4	13	78	21	54	11	9	19	59	1.59
45746242--45746651	133	3.1	134	80	7	474	33	14	21	30	1.93
45758010--45758060	21	2.4	21	86	0	66	31	19	47	1	1.61
45760651--45760722	36	2.0	36	100	0	144	36	13	13	36	1.85
45768686--45768806	47	2.5	47	82	6	152	46	19	24	9	1.79
45768686--45768820	52	2.8	48	82	5	164	45	20	24	9	1.80
45770087--45770403	143	2.2	141	89	2	474	29	22	22	24	1.99
45770182--45770445	45	5.8	45	72	11	160	29	23	22	24	1.99
45777594--45777620	5	5.4	5	100	0	54	62	18	0	18	1.32
45791752--45791781	15	2.0	15	93	0	51	30	26	33	10	1.89
45792715--45792740	9	2.9	9	100	0	52	46	0	0	53	1.00
45794815--45794839	12	2.1	12	100	0	50	40	0	0	60	0.97
45796296--45796330	16	2.1	17	89	5	54	42	11	0	45	1.40
45800166--45800295	49	2.7	49	90	0	197	23	16	30	30	1.96
45805200--45805236	18	2.1	18	89	0	56	54	16	5	24	1.63
45805247--45805272	7	3.7	7	100	0	52	42	0	0	57	0.98
45809724--45809761	12	3.2	12	85	3	51	73	0	2	23	0.95
45812891--45813122	51	4.7	51	78	6	253	30	25	18	25	1.98
45812891--45813122	101	2.4	97	92	2	374	30	25	18	25	1.98
45816871--45816942	31	2.4	30	79	4	81	40	12	12	34	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45818559--45818609	23	2.3	22	83	10	59	56	0	0	43	0.99
45825262--45825376	57	2.0	56	93	1	194	38	9	13	39	1.77
45827723--45827767	22	2.0	22	83	8	56	40	4	0	55	1.20
45831593--45831626	4	8.5	4	93	0	59	50	23	2	23	1.63
45833642--45833810	57	3.0	56	85	3	230	39	10	11	39	1.76
45845145--45845333	104	1.9	100	87	4	279	26	22	15	34	1.94
45845225--45845315	33	2.8	32	73	11	76	27	20	15	36	1.93
45849111--45849230	59	2.0	59	98	0	231	35	26	10	28	1.89
45853007--45853080	33	2.2	35	81	13	84	27	24	12	36	1.91
45854207--45854231	12	2.1	12	100	0	50	60	0	0	40	0.97
45858855--45858891	19	1.9	19	100	0	74	5	29	10	54	1.57
45865660--45865700	17	2.4	17	95	0	73	48	0	14	36	1.44
45865988--45866020	6	5.5	6	100	0	66	48	0	51	0	1.00
45868771--45868824	25	2.2	25	82	0	63	18	18	18	44	1.87
45868851--45868914	31	2.1	31	88	5	94	45	10	18	25	1.82
45884079--45884152	29	2.5	29	82	4	85	25	13	13	47	1.79
45886097--45886126	15	1.9	16	93	6	53	46	46	0	6	1.29
45887041--45887074	8	4.2	8	88	11	52	26	8	2	61	1.40
45887292--45887594	108	2.8	109	94	0	527	29	15	20	34	1.93
45887292--45887613	109	3.0	108	91	2	520	29	15	19	35	1.93
45890252--45890300	25	1.9	27	84	12	68	20	16	8	55	1.66
45892955--45893166	46	4.8	45	79	9	247	26	22	24	27	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45892964--45893161	84	2.3	86	82	7	229	25	22	23	28	1.99
45895388--45895793	43	9.3	44	73	9	233	31	19	21	27	1.98
45895465--45895716	46	5.7	45	75	10	207	28	20	23	26	1.99
45895376--45895844	174	2.7	174	93	0	776	31	20	22	26	1.98
45895376--45895793	87	4.8	86	70	8	353	31	19	21	27	1.97
45896038--45896067	15	1.9	16	93	6	53	46	46	0	6	1.29
45897490--45897523	8	4.2	8	88	11	52	26	8	2	61	1.40
45897563--45897612	16	3.1	17	80	8	50	16	2	8	74	1.15
45897586--45897624	17	2.3	18	86	8	55	12	0	5	82	0.83
45897752--45898064	108	2.9	109	93	0	529	30	15	19	34	1.93
45900626--45900737	26	4.3	26	90	2	163	37	13	8	41	1.74
45900882--45900915	18	1.9	18	88	5	52	17	20	0	61	1.34
45908889--45908946	28	2.1	28	93	0	98	34	6	24	34	1.82
45913849--45913877	15	1.9	15	100	0	58	13	0	10	75	1.04
45926582--45927808	613	2.0	613	100	0	2454	36	21	10	31	1.87
45935355--45935408	27	2.0	27	82	7	65	22	22	31	24	1.98
45938676--45938783	20	5.3	20	65	12	67	34	16	32	16	1.92
45938673--45938963	41	7.1	41	84	0	377	33	16	31	19	1.94
45938673--45938963	122	2.4	123	86	0	422	33	16	31	19	1.94
45941981--45942006	5	5.2	5	100	0	52	38	0	0	61	0.96
45945202--45945250	25	2.0	25	95	0	89	46	8	18	26	1.76
45945714--45945800	43	2.0	43	90	0	138	27	20	16	35	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45946713--45946749	15	2.5	15	95	0	65	24	29	13	32	1.93
45966931--45967104	27	6.4	26	74	9	109	32	24	15	28	1.95
45968479--45968509	16	1.9	16	93	0	53	25	0	9	64	1.24
45969010--45969038	12	2.4	12	100	0	58	17	20	24	37	1.93
45969006--45969118	55	2.0	56	93	3	192	32	11	21	34	1.89
45978653--45978723	36	2.0	36	94	0	124	50	2	14	32	1.57
45987972--45988098	62	2.0	61	89	5	193	61	6	1	30	1.30
45988122--45988178	18	3.2	17	75	7	60	50	1	3	43	1.29
45992941--45992967	4	6.8	4	100	0	54	77	0	22	0	0.76
45999468--45999561	25	3.8	25	86	0	125	18	32	17	31	1.93
46005288--46005330	17	2.5	17	81	7	52	58	2	0	39	1.11
46006164--46006211	15	3.1	15	78	3	51	31	10	2	56	1.45
46021958--46022010	20	2.6	19	77	11	52	45	5	1	47	1.37
46021955--46022003	20	2.4	20	82	3	53	44	6	2	46	1.39
46023939--46024064	46	2.8	46	84	5	161	32	6	15	46	1.71
46034407--46034620	46	4.5	46	81	9	243	30	16	22	30	1.96
46034373--46034576	98	2.1	96	86	4	286	28	16	23	31	1.96
46038567--46038618	25	2.1	25	88	0	77	40	9	21	28	1.84
46039264--46039321	20	2.9	19	82	7	53	36	22	32	8	1.85
46042987--46043043	30	1.9	30	92	0	96	38	29	1	29	1.67
46051363--46051437	34	2.2	34	86	9	100	46	17	9	26	1.78
46063774--46063831	25	2.4	25	79	2	64	17	27	20	34	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46063813--46063877	25	2.6	25	78	2	78	12	23	23	41	1.87
46063898--46063964	24	2.8	24	84	4	82	19	28	20	31	1.97
46069834--46069868	2	17.5	2	100	0	70	51	0	0	48	1.00
46074373--46074432	31	1.9	31	89	0	93	46	6	8	38	1.60
46074411--46074463	24	2.1	26	83	13	67	66	7	3	22	1.34
46074463--46074487	2	12.5	2	100	0	50	52	0	0	48	1.00
46074963--46075023	31	2.0	31	90	0	95	49	4	4	40	1.46
46084203--46084251	14	3.5	14	75	25	50	0	10	10	79	0.93
46084864--46084895	3	10.7	3	100	0	64	68	0	0	31	0.90
46092626--46092670	10	4.9	10	78	15	53	31	0	2	66	1.04
46092911--46093008	37	2.6	39	76	11	105	34	0	5	60	1.19
46092909--46093052	9	15.6	9	70	20	66	32	0	4	62	1.19
46092942--46093054	38	3.0	35	74	13	100	33	0	3	61	1.19
46093821--46093862	22	1.9	22	90	0	66	40	7	30	21	1.80
46094180--46094211	15	2.1	15	94	0	55	21	15	12	50	1.77
46103256--46103299	22	2.0	22	90	0	70	34	20	9	36	1.84
46109784--46109810	6	4.5	6	100	0	54	29	0	0	70	0.88
46114679--46114711	17	1.9	17	88	11	50	33	30	18	18	1.94
46128940--46128977	16	2.3	18	86	13	55	52	0	0	47	1.00
46130033--46130058	9	2.9	9	100	0	52	34	30	11	23	1.90
46130025--46130075	18	2.8	18	78	3	57	47	23	5	23	1.73
46131895--46131954	31	1.9	31	83	6	77	38	0	3	58	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46132347--46132395	23	2.1	23	88	0	71	36	10	2	51	1.48
46133345--46133393	23	2.1	23	81	7	55	65	0	16	18	1.28
46137752--46137782	16	1.9	16	93	0	53	48	16	6	29	1.70
46137951--46138005	19	2.9	19	84	10	60	36	1	7	54	1.39
46137991--46138016	11	2.4	11	100	0	52	30	0	7	61	1.24
46140540--46140629	24	3.6	24	77	7	90	24	6	3	65	1.32
46140552--46140609	26	2.3	24	85	5	71	24	3	5	67	1.27
46143929--46143997	13	4.9	14	70	16	54	78	0	20	1	0.83
46143930--46144002	28	2.6	28	82	4	94	76	0	21	1	0.86
46144880--46145419	143	3.8	143	88	2	755	30	21	21	26	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210