genome.fa.s3.2.7.7.80.10.50.1000.191.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr8
Parameters: 2 7 7 80 10 50 1000
Length:  70076365

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   

This is table  191  of  210  ( 25174 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63442634--63442698	23	2.8	23	83	6	78	24	4	35	35	1.76
63443646--63443691	20	2.3	20	84	0	65	45	15	13	26	1.82
63445100--63445192	27	3.4	27	82	2	107	21	23	31	23	1.99
63445301--63445337	10	3.6	10	88	3	56	70	0	29	0	0.88
63445461--63445506	3	15.3	3	100	0	92	32	0	0	67	0.91
63448643--63448667	11	2.3	11	100	0	50	44	16	8	32	1.76
63453282--63453803	158	3.3	157	71	12	481	30	10	8	51	1.64
63453198--63453672	158	2.9	157	70	12	399	29	12	7	50	1.67
63453198--63453808	320	1.9	320	91	2	1010	29	11	7	50	1.67
63454176--63454273	44	2.2	45	83	7	130	1	26	0	72	0.91
63454185--63454273	10	8.3	10	72	17	54	1	28	0	70	0.94
63454166--63454326	34	4.8	33	79	14	120	0	29	0	69	0.97
63454372--63454437	27	2.4	27	85	5	80	21	34	24	19	1.96
63456930--63456968	12	3.2	12	85	0	51	20	23	5	51	1.67
63463130--63463313	50	3.6	50	79	5	163	21	28	22	27	1.99
63470207--63470362	49	3.2	48	73	12	163	23	17	20	38	1.93
63470193--63470414	99	2.2	99	90	1	347	23	21	20	34	1.97
63470256--63470525	50	5.3	50	75	9	208	22	25	21	30	1.99
63471314--63471618	43	7.2	43	73	12	204	17	25	32	24	1.97
63471285--63471720	85	5.2	84	73	13	315	19	25	31	24	1.98
63471314--63471720	128	3.2	127	82	5	409	18	25	30	24	1.98
63477201--63477226	13	2.0	13	100	0	52	61	7	0	30	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63479694--63479738	23	2.0	23	86	4	65	46	11	4	37	1.60
63479706--63479748	22	1.9	23	85	4	61	41	11	4	41	1.62
63484118--63484160	23	1.9	23	90	4	70	46	13	4	34	1.65
63484115--63484172	22	2.6	22	81	7	73	43	17	3	36	1.66
63487687--63500234	85	147.5	85	76	6	7811	17	25	35	20	1.94
63487690--63501223	170	79.7	170	76	5	9508	16	25	35	20	1.94
63487690--63501223	255	53.1	254	76	5	9817	16	25	35	20	1.94
63499566--63499818	137	1.9	136	85	0	353	13	27	40	18	1.88
63500273--63501215	42	22.3	42	85	6	1074	15	26	36	20	1.93
63502280--63505011	42	64.7	43	76	5	1085	16	25	33	21	1.94
63502280--63503843	128	12.3	128	75	4	1166	18	27	33	21	1.96
63502281--63503673	85	16.4	86	76	5	951	17	27	33	21	1.96
63502280--63503674	43	32.8	43	75	6	829	17	27	33	21	1.96
63502280--63503738	170	8.6	170	76	3	1207	18	27	33	21	1.96
63504004--63504823	42	19.5	42	92	0	1219	15	23	37	23	1.93
63510081--63510674	43	13.9	43	79	3	493	17	27	34	20	1.95
63510077--63510674	85	7.0	85	79	2	549	17	27	34	20	1.95
63510126--63510674	128	4.3	128	77	6	540	17	27	34	21	1.95
63511373--63532312	43	493.3	43	76	6	13953	16	26	35	21	1.94
63511373--63559561	170	284.3	170	76	5	18930	16	24	33	20	1.93
63514205--63514590	203	1.9	204	81	1	470	17	27	36	18	1.93
63511373--63532312	85	246.6	84	77	5	13770	16	26	35	21	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63518791--63518898	55	2.0	55	85	3	146	18	19	35	26	1.95
63519159--63519805	162	3.9	161	77	10	453	17	25	35	21	1.95
63523713--63523935	119	1.9	119	82	3	279	18	24	35	21	1.95
63526022--63526180	76	2.1	76	85	2	212	20	27	32	20	1.97
63531154--63532329	42	27.7	42	80	6	1059	16	25	35	22	1.95
63511380--63532381	127	165.3	123	74	9	6340	16	26	35	21	1.94
63534858--63559561	85	291.7	84	76	5	16883	17	25	34	21	1.95
63535020--63535347	161	2.0	161	81	2	381	17	25	35	21	1.95
63534961--63535403	246	1.8	245	82	4	579	17	25	34	22	1.95
63535182--63559561	43	575.6	43	73	7	14829	17	25	34	21	1.95
63535521--63535673	76	2.0	76	81	5	175	15	24	39	20	1.92
63535453--63535762	161	1.9	161	80	3	365	15	24	38	20	1.92
63535663--63535947	128	2.2	128	93	0	480	15	26	37	20	1.92
63536562--63536797	76	3.0	76	79	6	195	16	24	35	23	1.95
63537423--63559548	212	104.5	212	73	8	4230	17	25	34	21	1.96
63552173--63552289	32	3.3	32	69	26	101	16	17	40	25	1.90
63552130--63552326	75	2.7	75	90	1	308	16	20	40	23	1.91
63554444--63554659	120	1.8	120	79	4	256	16	29	36	18	1.93
63555121--63555347	78	2.8	80	69	9	192	18	28	31	21	1.97
63556999--63557223	117	1.9	117	81	7	269	16	23	38	21	1.92
63556974--63557269	160	1.9	159	81	2	369	16	25	37	20	1.93
63563918--63564947	43	24.8	42	70	10	440	17	25	36	20	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63563918--63564947	85	12.4	84	73	8	707	17	25	36	20	1.95
63564344--63564947	128	4.8	127	71	10	375	17	26	35	20	1.95
63564609--63564905	160	1.9	160	82	2	382	17	26	36	19	1.94
63569390--63570530	43	27.0	43	77	5	928	16	26	35	21	1.94
63569389--63570530	85	13.5	85	77	6	960	16	26	35	21	1.94
63574891--63584783	43	233.1	43	74	4	6671	17	26	33	21	1.96
63574891--63584783	85	116.6	85	78	4	7384	17	26	33	21	1.96
63574907--63584783	212	46.6	210	75	7	2994	17	26	33	21	1.96
63576428--63576686	127	2.0	127	87	0	365	19	27	31	21	1.97
63576965--63577146	84	2.2	84	89	2	276	19	28	33	19	1.96
63579828--63579902	36	2.1	36	85	5	98	16	24	37	22	1.93
63581308--63581382	36	2.1	36	85	9	100	14	26	36	22	1.93
63581920--63581967	24	2.0	24	95	0	87	16	31	39	12	1.86
63586731--63586825	47	2.0	48	93	2	165	29	17	29	23	1.97
63589598--63589702	43	2.4	43	80	3	122	17	36	31	15	1.91
63590282--63590450	42	4.0	42	83	5	196	19	27	32	20	1.97
63590286--63590443	85	1.8	86	83	1	210	18	26	32	21	1.97
63612574--63612649	24	3.2	24	81	3	100	7	39	35	17	1.78
63612575--63612642	23	2.9	24	84	4	93	8	36	36	17	1.81
63612748--63613557	85	9.5	85	84	4	997	16	29	34	20	1.94
63612751--63613557	255	3.2	254	85	2	1109	16	28	34	20	1.94
63618810--63618880	23	3.1	23	83	0	88	9	40	32	16	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63618981--63620200	85	14.4	84	82	3	1254	15	26	36	21	1.93
63618983--63620200	212	5.7	208	81	6	1184	15	26	36	21	1.93
63626106--63626625	260	2.0	259	90	1	819	17	24	26	31	1.97
63631022--63631069	24	2.0	23	88	4	69	10	31	33	25	1.89
63631032--63631077	23	2.0	24	86	4	67	13	36	28	21	1.91
63631191--63631700	42	12.0	42	85	4	614	15	27	34	21	1.94
63631211--63631700	85	5.8	83	85	3	577	15	27	35	21	1.94
63631191--63631700	127	4.0	126	84	3	664	15	27	34	21	1.94
63631947--63632024	24	3.3	24	80	3	95	10	39	30	19	1.85
63632123--63633513	85	16.4	85	84	2	1731	15	28	35	20	1.94
63647226--63647420	43	4.6	42	81	5	212	16	32	34	16	1.91
63647873--63647995	43	2.9	44	82	4	162	17	31	30	19	1.95
63656148--63656191	23	1.9	23	95	0	79	11	36	31	20	1.88
63656290--63657807	85	17.9	84	84	3	1765	15	26	36	21	1.93
63656290--63657807	127	11.9	127	83	3	1820	15	26	36	21	1.93
63665452--63665662	43	4.9	43	79	4	203	17	31	33	17	1.93
63665511--63665671	85	1.9	85	88	0	241	19	30	32	17	1.95
63671295--63671461	42	3.9	42	88	5	246	17	31	32	18	1.94
63671297--63671454	85	1.8	86	90	1	255	16	30	33	19	1.94
63671671--63671744	24	3.1	24	82	3	96	9	39	31	20	1.84
63671681--63671746	23	2.8	23	83	2	87	10	39	31	18	1.85
63671816--63672498	42	16.2	42	75	9	527	16	27	35	19	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63671816--63672198	85	4.5	84	88	4	520	15	26	37	20	1.92
63671816--63672498	127	5.4	127	75	9	563	16	27	35	19	1.94
63672296--63672498	85	2.4	86	80	0	219	16	32	33	17	1.92
63677035--63677201	42	3.9	42	82	5	201	18	28	31	21	1.97
63677037--63677194	85	1.8	86	84	1	219	17	27	31	22	1.97
63678598--63679414	42	19.2	42	83	4	935	15	28	35	21	1.93
63678601--63679414	85	9.6	84	85	4	951	15	28	35	21	1.93
63686158--63686306	43	3.5	44	77	10	148	20	29	32	18	1.96
63686756--63686921	42	3.9	42	85	7	219	19	30	31	18	1.96
63686758--63686921	85	1.9	85	85	4	224	19	30	31	18	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210