genome.fa.s3.2.7.7.80.10.50.1000.87.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr8
Parameters: 2 7 7 80 10 50 1000
Length:  70076365

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   

This is table  87  of  210  ( 25174 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30148678--30148757	30	2.6	30	79	13	83	37	6	0	56	1.25
30151920--30151980	29	2.0	29	81	6	68	22	16	19	40	1.90
30156943--30156981	19	2.0	19	90	5	60	2	17	0	79	0.84
30170878--30171116	119	2.0	120	99	0	471	30	11	9	47	1.72
30172086--30172219	66	2.0	68	89	5	211	20	11	19	48	1.79
30177051--30177080	3	10.0	3	100	0	60	66	0	33	0	0.92
30177861--30178016	81	1.9	82	82	3	199	51	8	5	34	1.56
30178230--30178271	11	3.8	11	81	12	50	73	0	2	23	0.94
30182171--30182212	13	3.2	13	80	16	50	21	0	4	73	1.01
30182349--30182400	26	2.0	26	85	3	70	48	5	0	46	1.26
30183728--30184006	138	2.0	139	99	0	551	25	5	19	49	1.70
30184284--30184330	16	2.9	16	77	0	58	27	27	4	40	1.75
30184858--30184883	10	2.6	10	100	0	52	30	19	30	19	1.96
30185163--30185212	20	2.7	18	82	11	73	0	28	26	46	1.53
30185163--30185221	20	3.1	19	77	15	68	0	30	23	45	1.53
30185120--30185226	26	4.5	25	72	20	86	0	32	19	46	1.56
30185282--30185315	17	2.0	17	100	0	68	11	11	29	47	1.76
30192914--30194199	131	9.8	131	97	0	2293	30	19	25	24	1.98
30194483--30194531	21	2.4	21	93	3	82	38	10	12	38	1.77
30194523--30194567	21	2.0	23	83	8	58	37	4	13	44	1.64
30194790--30194828	19	2.0	21	85	10	55	15	10	5	69	1.34
30228116--30228167	26	2.0	26	88	0	77	36	11	9	42	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30230208--30230258	26	2.0	26	85	11	70	43	9	5	41	1.62
30236229--30236280	26	2.0	26	100	0	104	38	11	7	42	1.70
30238514--30238694	41	4.4	41	89	2	240	23	25	12	38	1.90
30244642--30244680	20	1.9	21	89	5	62	48	0	7	43	1.31
30253611--30253746	40	3.4	39	79	3	146	37	15	21	25	1.93
30253782--30253872	41	2.2	41	94	0	155	20	21	28	28	1.99
30254252--30254313	21	3.0	20	79	6	61	22	0	41	35	1.54
30254245--30254347	29	3.6	29	79	6	102	24	0	40	34	1.55
30254277--30254324	14	3.4	14	88	5	78	25	0	41	33	1.55
30254594--30254690	28	3.5	27	72	16	74	21	2	40	36	1.65
30254849--30254887	14	2.7	14	84	4	51	7	0	46	46	1.31
30254901--30254940	18	2.2	19	86	8	57	35	7	22	35	1.82
30256542--30256614	33	2.2	33	97	0	137	24	8	12	54	1.64
30259104--30259369	42	6.3	43	88	2	376	24	18	31	25	1.98
30259129--30259362	85	2.8	85	94	0	398	25	18	30	25	1.98
30270732--30270820	44	2.0	44	86	0	124	23	7	12	56	1.62
30283506--30283923	27	15.6	27	86	1	525	18	20	21	39	1.93
30289185--30289390	39	5.3	38	84	4	225	32	16	32	18	1.94
30289210--30289274	20	3.3	20	71	4	69	29	18	38	13	1.89
30289230--30289291	19	3.2	19	72	4	52	33	19	33	12	1.90
30289185--30289283	20	5.1	20	64	14	62	29	16	35	19	1.93
30289185--30289365	76	2.3	78	87	1	249	33	17	31	17	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30302946--30303143	51	3.9	51	78	3	213	23	16	28	31	1.96
30302950--30303143	102	1.9	101	85	3	264	23	16	28	31	1.96
30319514--30319545	17	1.9	16	93	6	55	31	21	6	40	1.78
30322601--30322681	38	2.1	38	88	0	117	32	20	13	33	1.92
30322612--30322701	38	2.4	38	78	0	99	31	17	14	36	1.90
30324715--30324777	30	2.1	31	85	8	85	38	3	14	44	1.61
30330036--30330110	37	2.0	37	100	0	150	30	24	13	32	1.93
30340201--30340244	22	2.0	22	83	16	56	27	2	22	47	1.63
30346688--30346880	38	5.1	38	84	2	226	37	30	16	15	1.90
30349045--30349092	23	2.1	23	100	0	96	16	8	16	58	1.61
30350045--30350177	27	5.0	27	87	3	180	40	22	19	17	1.91
30350565--30350724	28	5.7	28	81	4	153	26	25	20	28	1.99
30350560--30350724	56	2.9	56	79	5	181	27	24	19	29	1.98
30350567--30350723	84	1.9	84	84	0	215	26	24	20	28	1.99
30355385--30355435	18	3.0	17	83	8	59	5	11	9	72	1.27
30356064--30356112	24	2.0	24	100	0	98	36	16	12	34	1.86
30356248--30356289	12	3.5	12	78	12	50	38	0	42	19	1.51
30356970--30357102	27	5.0	27	86	1	178	42	22	17	18	1.89
30357499--30357565	28	2.4	28	75	9	73	23	20	22	32	1.98
30360457--30360498	22	1.9	22	85	9	59	19	16	4	59	1.54
30360463--30360506	23	2.0	22	83	12	56	15	18	4	61	1.50
30363538--30363617	39	2.1	39	100	0	160	41	10	27	21	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30374726--30374763	19	2.0	19	85	10	51	31	2	7	57	1.41
30377611--30377672	31	2.0	31	100	0	124	29	32	19	19	1.96
30384152--30384212	32	1.9	32	83	12	81	44	4	1	49	1.33
30394518--30394602	42	2.0	42	86	0	116	9	20	25	44	1.81
30395443--30395495	15	3.4	16	74	10	65	47	0	1	50	1.12
30397216--30397260	1	45.0	1	90	0	72	0	2	2	95	0.31
30398588--30398641	21	2.7	20	80	5	63	38	11	5	44	1.63
30398775--30398828	20	2.7	20	85	0	72	37	11	3	48	1.57
30398888--30398983	20	4.8	20	75	2	75	37	16	3	42	1.64
30401973--30402136	20	8.2	20	71	9	111	38	17	5	39	1.73
30401973--30402136	40	4.1	39	77	9	143	38	17	5	39	1.73
30404498--30404560	29	2.2	29	82	0	72	26	28	25	19	1.98
30406867--30406932	20	3.3	19	79	10	69	37	18	1	42	1.59
30406882--30406943	21	3.0	21	85	2	81	33	16	1	48	1.56
30407118--30407473	20	17.8	20	70	8	206	40	16	6	36	1.74
30407417--30407481	20	3.2	20	74	8	60	40	16	3	40	1.65
30407544--30407626	20	4.2	20	76	0	67	39	14	7	38	1.74
30419460--30419609	43	3.5	43	87	1	212	26	23	3	46	1.68
30419460--30419621	44	3.7	43	83	4	202	25	24	3	46	1.67
30440897--30440954	18	3.3	17	80	4	53	18	3	5	72	1.18
30440912--30440972	18	3.5	17	80	10	61	21	6	3	68	1.27
30440926--30440974	18	2.7	18	87	0	62	24	6	2	67	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30443015--30443074	22	2.7	22	86	0	84	25	16	13	45	1.84
30448114--30448155	19	2.2	19	83	8	50	7	16	7	69	1.34
30449312--30449351	20	2.0	20	85	0	53	47	5	2	45	1.38
30452205--30452257	3	17.7	3	100	0	106	67	0	32	0	0.91
30456171--30456274	35	3.0	35	81	2	129	27	23	16	32	1.96
30456143--30456281	35	4.0	35	78	7	122	26	23	16	33	1.95
30459511--30459773	30	8.8	30	82	1	213	32	15	19	33	1.93
30459511--30459778	60	4.5	60	86	0	304	32	16	18	32	1.93
30459511--30459778	90	3.0	90	81	1	304	32	16	18	32	1.93
30466379--30466422	21	2.1	21	86	0	61	29	6	29	34	1.83
30470122--30470245	45	2.7	45	88	3	178	45	10	19	24	1.81
30470122--30470262	45	3.1	44	82	10	160	43	10	19	26	1.84
30476881--30476981	31	3.3	31	87	0	139	35	38	3	21	1.72
30479931--30479959	15	1.9	15	100	0	58	55	10	0	34	1.34
30482529--30482567	2	19.5	2	100	0	78	51	0	0	48	1.00
30488495--30488539	17	2.8	17	83	12	51	55	6	2	35	1.38
30490386--30490462	38	2.0	38	95	5	138	29	12	6	50	1.66
30490539--30490600	25	2.4	26	86	7	83	53	4	1	40	1.32
30494679--30494728	22	2.3	22	86	6	66	54	20	12	14	1.71
30495388--30495532	63	2.3	63	80	3	157	26	28	21	23	1.99
30497536--30497608	36	2.0	36	100	0	146	32	36	8	21	1.83
30499893--30500178	43	6.7	43	88	1	387	29	34	15	20	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30499893--30500217	128	2.5	129	86	2	440	31	33	14	20	1.93
30505307--30505345	20	2.0	20	84	0	51	66	5	2	25	1.25
30505352--30505539	41	4.6	41	90	4	281	29	32	21	16	1.95
30505519--30505558	19	2.1	19	85	0	53	27	35	17	20	1.95
30507900--30507953	26	2.1	26	100	0	108	33	24	20	22	1.97
30511254--30511293	20	2.0	20	100	0	80	20	5	30	45	1.72
30515107--30515198	32	2.8	32	85	1	112	20	19	36	22	1.95
30523361--30523386	3	8.7	3	100	0	52	65	0	0	34	0.93
30524770--30524799	3	10.0	3	92	0	51	33	3	0	63	1.11
30526402--30526447	18	2.8	16	86	6	65	26	2	0	71	0.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210