genome.fa.s3.2.7.7.80.10.50.1000.159.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr8
Parameters: 2 7 7 80 10 50 1000
Length:  70076365

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   

This is table  159  of  210  ( 25174 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53232777--53232801	2	12.5	2	100	0	50	48	0	0	52	1.00
53237020--53237057	20	1.9	20	88	0	58	39	23	23	13	1.90
53244186--53244222	13	2.8	13	100	0	74	29	13	32	24	1.93
53246571--53246615	19	2.5	18	82	10	56	51	0	4	44	1.21
53248148--53248179	15	2.1	15	94	0	55	68	9	6	15	1.36
53251533--53251709	45	4.0	45	82	3	178	38	27	12	22	1.90
53251527--53251705	90	2.0	88	83	2	223	36	27	13	21	1.92
53253057--53253203	72	2.0	72	90	2	233	23	17	17	40	1.90
53253129--53253336	115	1.8	115	91	0	344	20	20	18	40	1.92
53264738--53264767	15	1.9	16	93	6	53	56	0	23	20	1.42
53265234--53265263	16	1.9	16	93	6	53	30	0	20	50	1.49
53271556--53271913	177	2.0	177	93	0	617	36	23	12	27	1.91
53290838--53290904	29	2.3	29	84	5	82	22	16	17	43	1.88
53303588--53303635	22	2.2	22	100	0	96	25	33	0	41	1.55
53303610--53303722	51	2.2	51	90	0	181	28	27	1	42	1.66
53305329--53305359	15	2.1	15	100	0	62	19	6	38	35	1.77
53305780--53305814	18	1.9	18	88	0	52	25	34	8	31	1.86
53306307--53306386	29	2.8	29	92	0	124	46	22	0	31	1.52
53306404--53306829	29	16.0	28	77	15	277	46	23	0	30	1.53
53306272--53306582	101	3.1	100	86	5	384	46	19	0	33	1.53
53306307--53306770	130	3.6	130	91	3	751	46	21	0	31	1.52
53306408--53306799	159	2.5	150	87	4	455	46	23	0	30	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53306465--53306517	23	2.6	19	76	23	63	47	16	0	35	1.48
53306532--53306829	87	3.3	87	73	15	312	45	26	0	27	1.54
53306881--53306905	10	2.5	10	100	0	50	44	8	0	48	1.32
53306830--53307062	122	1.9	122	95	0	421	36	9	9	43	1.71
53310646--53310995	124	2.8	124	92	0	594	33	22	15	29	1.94
53316533--53316616	41	2.1	39	80	14	91	50	2	7	40	1.43
53323221--53323614	196	2.0	197	99	0	781	45	11	8	33	1.71
53325228--53325586	41	8.9	41	80	4	381	21	17	29	32	1.96
53325226--53325586	81	4.5	80	79	5	388	21	17	29	32	1.96
53325233--53325586	122	2.9	119	83	5	426	21	17	28	32	1.96
53325957--53326011	28	2.0	28	85	0	74	21	0	40	38	1.54
53325964--53326026	21	3.0	20	82	13	56	20	0	42	36	1.52
53329514--53329542	15	1.9	15	100	0	58	20	0	34	44	1.52
53329555--53329587	14	2.3	15	89	5	50	21	0	39	39	1.53
53330826--53330890	22	3.0	22	88	0	94	20	47	4	27	1.69
53337810--53338457	322	2.0	322	97	0	1215	41	20	10	28	1.84
53338568--53338600	17	2.1	16	88	11	50	18	36	0	45	1.49
53342932--53342961	14	2.1	15	93	6	53	36	0	0	63	0.95
53360025--53360076	25	2.1	25	100	0	104	40	17	15	26	1.89
53360125--53360165	16	2.3	19	88	12	61	31	0	21	46	1.52
53371592--53371647	28	2.0	28	100	0	112	39	17	10	32	1.84
53372472--53372501	4	7.5	4	100	0	60	50	26	0	23	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53372666--53372733	35	2.0	34	85	2	91	72	2	0	25	0.99
53372667--53372741	9	8.3	9	70	15	57	72	2	0	25	0.98
53383142--53383629	77	6.3	77	98	0	931	41	7	9	41	1.65
53383737--53383826	45	2.0	44	87	6	128	35	27	5	31	1.80
53383806--53383842	16	2.3	16	95	0	65	24	27	5	43	1.76
53390070--53390107	20	1.9	20	88	0	58	36	5	5	52	1.47
53391249--53391284	15	2.5	14	86	8	54	69	11	8	11	1.37
53394620--53394798	50	3.6	48	78	12	168	21	25	23	29	1.99
53394664--53394852	50	3.6	51	81	9	179	24	26	20	27	1.99
53397595--53397635	22	2.0	20	85	9	55	34	0	7	58	1.26
53401513--53401569	30	1.9	30	96	0	105	31	22	14	31	1.93
53410592--53410748	41	3.8	41	83	2	190	32	15	31	20	1.93
53412823--53412953	67	2.0	67	89	0	199	27	19	24	28	1.99
53414820--53414883	27	2.4	26	86	2	92	39	9	17	34	1.82
53417997--53418086	23	4.0	24	74	8	82	57	0	2	40	1.11
53418002--53418080	25	3.2	25	87	7	101	59	0	2	37	1.11
53418816--53419067	125	2.0	126	99	0	497	27	10	5	56	1.54
53419045--53419085	13	3.1	14	79	10	50	21	0	2	75	0.92
53429555--53429706	3	50.7	3	68	13	64	61	3	5	28	1.37
53441557--53441614	28	2.0	29	80	9	66	65	3	8	22	1.36
53452490--53452578	25	3.6	25	82	0	97	29	21	22	26	1.99
53461183--53461216	13	2.8	12	86	4	50	50	26	0	23	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53460992--53461614	210	3.0	208	88	4	938	38	16	8	36	1.80
53462419--53463047	210	3.0	209	91	1	1017	37	17	8	36	1.80
53470160--53470227	28	2.5	28	86	11	104	29	25	23	22	1.99
53470328--53470408	26	3.1	26	81	0	99	33	23	22	20	1.97
53470645--53471013	27	13.6	27	77	10	335	20	15	20	43	1.87
53470652--53470960	81	3.8	81	84	3	392	20	15	20	44	1.87
53471244--53471277	17	1.9	18	94	5	61	23	44	20	11	1.84
53485387--53485437	10	4.6	11	77	15	52	37	0	13	49	1.43
53485400--53485444	23	2.0	23	91	4	74	37	0	11	51	1.38
53495921--53495973	25	2.2	23	83	6	61	32	0	3	64	1.12
53495923--53495982	25	2.5	24	78	10	59	31	1	3	63	1.20
53508340--53508369	9	3.3	9	90	0	51	46	16	0	36	1.47
53508317--53508371	18	2.9	19	78	10	67	49	20	0	30	1.49
53515859--53515907	24	2.0	24	96	0	89	20	6	8	65	1.41
53526019--53526476	227	2.0	228	99	0	909	34	12	29	24	1.91
53529437--53529872	218	2.0	218	100	0	872	23	11	38	26	1.88
53529986--53530027	22	2.1	19	86	13	57	52	0	2	45	1.13
53531493--53532455	481	2.0	481	100	0	1926	43	11	11	32	1.77
53538835--53539082	50	4.9	50	80	7	243	28	20	28	22	1.99
53548528--53548570	17	2.4	18	76	3	52	9	4	41	44	1.57
53556653--53556700	24	2.0	25	83	4	62	39	16	22	20	1.92
53556704--53556831	25	5.2	25	70	13	86	33	21	23	21	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53556787--53556859	26	2.8	26	81	4	85	35	27	19	17	1.94
53564542--53564624	25	3.3	25	72	0	76	34	19	25	20	1.96
53564599--53564816	25	8.8	24	68	13	95	35	20	23	20	1.96
53566693--53567772	540	2.0	540	100	0	2160	31	13	21	32	1.93
53569128--53569420	40	7.3	40	85	3	358	15	15	27	41	1.87
53570076--53570124	20	2.5	20	89	0	71	53	0	24	22	1.47
53580029--53580113	39	2.2	40	89	4	136	36	16	12	34	1.87
53582566--53582591	5	5.2	5	100	0	52	23	19	19	38	1.93
53583934--53584036	28	3.5	31	78	17	103	25	25	24	25	2.00
53583957--53584050	28	3.4	28	88	2	136	28	23	22	25	1.99
53584065--53584115	21	2.4	21	81	12	61	39	49	0	11	1.40
53584156--53584232	26	3.0	26	90	0	109	38	22	23	15	1.92
53584422--53584697	27	10.2	26	78	6	255	17	18	19	44	1.87
53584422--53584697	54	5.1	53	83	4	311	17	18	19	44	1.87
53584410--53584697	81	3.6	80	79	6	314	18	17	20	43	1.88
53588174--53588213	20	2.0	20	85	5	53	30	22	2	45	1.66
53591418--53591856	51	8.7	50	76	4	357	27	16	26	29	1.97
53591418--53591861	102	4.4	100	81	7	479	27	16	26	29	1.97
53599486--53599567	28	2.9	28	88	0	128	29	21	20	28	1.98
53599883--53600217	27	12.4	27	81	1	298	17	17	20	44	1.87
53599883--53600217	81	4.2	79	81	8	365	17	17	20	44	1.87
53602310--53602341	15	2.2	15	94	5	57	65	0	3	31	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53605485--53605534	26	1.9	26	84	8	66	42	10	14	34	1.78
53616432--53616498	34	1.9	35	93	3	118	46	11	8	32	1.72
53618291--53618321	2	15.5	2	100	0	62	0	0	48	51	1.00
53622478--53622550	36	2.0	36	100	0	146	30	26	19	24	1.98
53624995--53625023	2	14.5	2	100	0	58	0	51	0	48	1.00
53631009--53631089	37	2.2	37	90	0	126	16	17	29	37	1.91
53633612--53633780	40	4.2	40	99	0	329	48	12	10	28	1.73
53639666--53639696	7	4.4	7	100	0	62	12	0	38	48	1.42
53639709--53640031	118	2.9	108	84	8	448	30	17	23	29	1.97
53641390--53641427	13	2.8	14	80	19	53	65	7	5	21	1.38

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210