genome.fa.s3.2.7.7.80.10.50.1000.110.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr8
Parameters: 2 7 7 80 10 50 1000
Length:  70076365

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   

This is table  110  of  210  ( 25174 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37087873--37088353	95	5.3	90	75	9	302	29	17	18	34	1.94
37089307--37089411	51	2.1	51	85	0	138	29	16	17	37	1.91
37089201--37089676	44	10.5	44	75	10	323	29	17	18	34	1.94
37089269--37089636	95	3.9	94	79	6	338	29	17	17	35	1.93
37089201--37089681	95	5.3	90	75	9	302	29	17	18	34	1.94
37096751--37096790	20	2.0	20	85	4	55	45	17	7	30	1.76
37104265--37104317	24	2.2	24	83	6	63	35	11	20	32	1.88
37104590--37105438	89	9.6	89	87	0	1106	28	24	24	21	1.99
37104590--37105435	444	1.9	444	87	0	1233	28	25	24	21	1.99
37105515--37105675	44	3.6	44	81	2	171	31	20	20	27	1.97
37107004--37107045	20	2.1	20	86	8	59	26	2	4	66	1.23
37108596--37108669	22	3.5	22	68	20	59	31	2	6	59	1.37
37109386--37109580	97	2.0	97	93	2	338	27	10	25	36	1.89
37120705--37121482	132	5.9	132	93	2	1318	29	20	25	24	1.99
37120969--37121278	44	7.2	44	62	15	110	30	21	24	24	1.99
37120705--37121475	257	3.0	260	93	1	1314	29	20	25	24	1.99
37121226--37121410	44	4.2	44	63	13	101	28	19	25	26	1.99
37120705--37121481	389	2.0	393	93	2	1319	29	20	25	24	1.99
37122667--37122713	24	2.0	23	84	15	62	34	4	8	53	1.51
37122916--37122989	22	3.5	22	68	20	59	31	2	6	59	1.37
37123356--37123400	17	2.6	17	82	13	56	17	4	2	75	1.07
37123717--37123913	98	2.0	98	93	0	340	27	10	25	37	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37124980--37125509	109	4.9	108	89	1	767	29	16	18	35	1.93
37124980--37125513	217	2.5	216	89	2	822	29	16	18	36	1.92
37126622--37126722	29	3.4	29	70	5	96	44	12	7	34	1.72
37126592--37126722	59	2.2	60	95	1	237	40	12	9	37	1.76
37128292--37128318	14	1.9	14	100	0	54	40	7	0	51	1.30
37128300--37128324	10	2.5	10	100	0	50	40	8	0	52	1.31
37128872--37128911	20	2.0	20	95	0	71	27	7	25	40	1.82
37134163--37134193	2	15.5	2	93	0	53	48	0	3	48	1.17
37144339--37144779	44	9.6	44	66	20	176	26	21	18	33	1.96
37144281--37144532	138	1.8	138	82	1	326	24	19	19	36	1.95
37144383--37144702	94	3.4	94	86	4	414	26	20	19	34	1.96
37144655--37144779	43	2.9	43	82	7	119	28	25	16	28	1.97
37144561--37144860	137	2.2	138	84	5	394	28	23	16	31	1.96
37151001--37151076	3	24.0	3	74	10	62	59	3	3	32	1.34
37151054--37151111	21	2.9	19	80	17	64	56	0	10	32	1.33
37152133--37152164	11	2.9	11	95	0	55	0	18	0	81	0.70
37155968--37155999	13	2.4	14	85	15	50	56	0	0	43	0.99
37156944--37157039	48	2.0	49	93	2	167	33	21	12	32	1.91
37156944--37157039	49	2.0	49	93	4	167	33	21	12	32	1.91
37165449--37165488	12	3.5	12	90	6	57	60	2	0	37	1.11
37175765--37175852	46	1.9	46	86	4	124	45	23	14	15	1.84
37178047--37178082	3	12.0	3	100	0	72	66	0	0	33	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37201968--37202005	1	38.0	1	100	0	76	100	0	0	0	0.00
37217182--37217243	28	2.2	28	85	5	81	72	0	24	3	0.99
37217182--37217243	14	4.2	15	76	15	67	72	0	24	3	0.99
37217869--37217962	23	4.3	20	67	23	57	62	1	30	5	1.24
37217859--37217960	15	6.4	15	68	23	57	61	0	31	5	1.26
37218689--37218751	31	2.0	31	90	0	99	26	14	11	47	1.77
37225205--37225243	15	2.5	15	95	4	69	33	15	5	46	1.68
37229024--37229057	13	2.6	13	86	13	52	88	0	8	2	0.62
37229024--37229057	14	2.5	13	86	9	50	88	0	8	2	0.62
37253450--37253705	46	5.8	46	68	12	158	30	20	21	26	1.98
37253412--37253834	175	2.4	175	91	0	686	31	19	21	27	1.97
37253722--37254052	44	7.7	43	66	15	130	32	16	20	29	1.95
37253670--37254116	129	3.5	129	90	1	671	30	18	20	29	1.97
37255819--37255859	3	13.3	3	89	5	64	29	0	2	68	1.03
37255879--37255948	31	2.2	32	85	7	90	32	5	4	57	1.42
37257187--37257228	20	2.1	20	95	0	75	26	28	9	35	1.88
37257190--37257234	20	2.2	20	88	0	63	24	24	8	42	1.83
37257587--37257663	14	5.0	15	71	20	52	42	14	9	33	1.77
37257603--37257642	20	2.0	20	90	0	62	50	12	10	27	1.72
37257591--37257657	34	1.9	35	90	3	109	46	13	8	31	1.74
37263731--37263764	18	1.9	18	88	5	52	47	20	2	29	1.65
37267966--37268006	21	2.0	21	90	9	66	34	0	12	53	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37268714--37268764	22	2.3	23	80	10	61	64	9	15	9	1.48
37276945--37276992	25	2.0	25	87	4	71	16	27	20	35	1.94
37279853--37280010	43	3.7	42	70	10	124	25	18	25	29	1.98
37280601--37280635	17	2.0	18	88	5	54	28	2	28	40	1.71
37288744--37288866	35	3.6	34	77	13	117	32	26	22	17	1.97
37288775--37288866	34	2.7	34	80	8	114	33	27	23	15	1.95
37297957--37298018	32	2.0	32	87	3	90	25	14	9	50	1.73
37299603--37299665	28	2.2	29	80	8	74	49	7	1	41	1.42
37308499--37308530	4	8.0	4	92	0	55	25	3	25	46	1.67
37315863--37315887	7	3.6	7	100	0	50	28	0	28	44	1.55
37320357--37320593	94	2.5	94	79	10	261	26	24	17	31	1.97
37331586--37331621	18	2.1	18	89	5	56	36	2	0	61	1.11
37335995--37336027	7	4.6	7	92	7	57	87	0	12	0	0.53
37335995--37336027	15	2.3	15	94	5	59	87	0	12	0	0.53
37336923--37336981	7	8.3	7	80	16	68	69	1	13	15	1.27
37338190--37338451	88	3.0	89	82	2	334	29	23	23	23	1.99
37338497--37339098	132	4.6	132	93	2	998	27	18	24	29	1.98
37338497--37339098	262	2.3	263	91	3	1007	27	18	24	29	1.98
37338738--37338928	43	4.4	43	67	12	129	27	16	26	30	1.97
37338593--37338948	88	4.1	88	64	17	191	26	17	24	31	1.97
37338650--37338974	44	7.4	43	65	15	112	28	16	25	29	1.97
37339027--37339379	128	2.8	127	88	3	487	31	19	22	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37339270--37339712	111	4.0	111	96	0	742	31	21	22	24	1.98
37339955--37340007	7	7.0	7	80	16	61	79	1	0	18	0.83
37346603--37346643	21	2.0	20	90	4	64	46	7	0	46	1.30
37357551--37357611	29	2.1	30	81	9	72	36	8	11	44	1.71
37358285--37358471	100	1.9	100	86	5	270	35	19	19	25	1.95
37358379--37358878	113	4.4	113	83	3	610	35	18	19	25	1.95
37358861--37358898	20	1.9	20	88	0	58	39	21	13	26	1.89
37359584--37359627	21	2.1	21	83	8	54	25	0	36	38	1.56
37360259--37360656	191	2.1	191	90	0	616	18	25	12	43	1.84
37361965--37362012	25	1.9	25	86	0	69	50	16	0	33	1.46
37362028--37362065	18	2.1	18	90	0	58	47	13	2	36	1.56
37362160--37362462	9	34.4	9	78	12	317	46	17	1	33	1.60
37362160--37362464	36	8.7	36	87	7	398	46	17	1	33	1.60
37362450--37362505	26	2.2	26	90	0	85	42	10	5	41	1.62
37368670--37368740	21	3.4	21	80	3	81	33	16	45	4	1.67
37369104--37369161	28	2.1	28	86	0	80	20	25	27	25	1.99
37369150--37369292	74	1.9	73	84	6	191	35	19	18	26	1.95
37369224--37369359	42	3.3	42	87	2	202	34	21	20	23	1.97
37371086--37371269	46	4.0	46	100	0	368	17	17	26	39	1.91
37373466--37373533	31	2.2	31	84	5	84	35	14	10	39	1.80
37380871--37381669	404	2.0	404	94	0	1409	32	16	22	28	1.95
37383233--37383301	3	23.7	3	78	19	67	30	4	1	63	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37383233--37383301	8	7.9	9	78	18	67	30	4	1	63	1.22
37387056--37387102	19	2.4	19	85	7	58	82	4	8	4	0.91
37387054--37387103	21	2.4	21	77	12	59	82	6	8	4	0.96
37387055--37387103	20	2.4	21	79	3	55	83	4	8	4	0.89
37387420--37387453	14	2.3	15	90	5	52	35	14	23	26	1.94
37388477--37389267	129	6.1	129	82	7	893	32	22	20	24	1.98
37388475--37389118	44	14.9	44	68	11	296	31	22	20	24	1.98
37389180--37389295	44	2.6	44	85	5	146	30	22	20	26	1.98
37388899--37389391	267	1.8	265	79	6	573	32	22	19	25	1.97
37391760--37391809	15	3.0	17	85	8	59	78	0	22	0	0.76

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210