genome.fa.s3.2.7.7.80.10.50.1000.133.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr8
Parameters: 2 7 7 80 10 50 1000
Length:  70076365

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   

This is table  133  of  210  ( 25174 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44081168--44081206	20	2.0	20	94	0	69	48	2	0	48	1.15
44085457--44085552	10	10.2	10	73	13	62	33	0	4	62	1.14
44085453--44085511	27	2.2	27	81	0	73	28	0	3	67	1.06
44085468--44085516	18	2.8	17	76	11	55	26	0	4	69	1.06
44085450--44085565	38	3.1	37	74	18	114	31	0	4	62	1.20
44085486--44085565	29	2.9	27	75	15	72	31	1	5	62	1.24
44085485--44085542	30	2.0	30	89	3	91	31	0	3	65	1.09
44085497--44085565	29	2.5	27	82	13	86	33	1	5	59	1.30
44089981--44090011	9	3.4	9	90	0	53	25	12	22	38	1.90
44090065--44090119	9	6.1	9	89	0	83	45	12	10	30	1.77
44090065--44090119	18	3.1	18	94	0	92	45	12	10	30	1.77
44104543--44104611	27	2.6	27	83	0	84	18	36	27	17	1.94
44104674--44104782	5	22.4	5	71	13	59	65	0	33	0	0.99
44104664--44104774	24	4.8	24	77	14	110	67	0	31	0	0.97
44104706--44104803	48	2.0	48	86	3	135	67	0	32	0	0.91
44104712--44104764	14	3.6	14	76	16	54	71	0	28	0	0.86
44104689--44104794	24	4.4	24	72	13	92	66	0	33	0	0.92
44104672--44104805	68	2.0	67	85	11	184	67	0	31	0	0.96
44104672--44104832	68	2.4	66	79	14	166	66	0	32	0	0.96
44105143--44105607	159	2.9	154	72	15	412	50	7	11	30	1.65
44108548--44108669	41	2.9	41	76	15	133	51	9	4	33	1.56
44108951--44109016	27	2.4	27	92	0	105	15	30	33	21	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44110068--44110108	2	20.5	2	100	0	82	51	0	48	0	1.00
44114118--44114153	4	9.0	4	100	0	72	25	0	0	75	0.81
44135855--44135887	17	1.9	18	88	11	52	48	18	12	21	1.80
44144702--44144775	36	2.1	36	89	5	114	39	14	13	32	1.86
44150111--44150158	3	16.0	3	100	0	96	33	33	0	33	1.58
44153597--44153675	26	3.0	24	70	15	68	58	5	1	35	1.28
44157109--44157145	18	2.0	19	89	5	58	37	0	40	21	1.54
44160697--44161638	325	2.9	323	93	1	1604	35	19	5	40	1.74
44166216--44166260	17	2.6	17	79	13	56	20	6	0	73	1.05
44167273--44167316	20	2.4	18	82	14	54	50	2	4	43	1.35
44168501--44168560	16	3.8	16	82	4	59	46	13	23	16	1.82
44169023--44169048	12	2.2	12	100	0	52	23	19	15	42	1.89
44176369--44176467	46	2.2	43	81	12	110	24	19	24	32	1.97
44177638--44177903	133	2.0	133	99	0	523	32	9	22	35	1.86
44178637--44178679	8	5.2	8	78	15	52	13	2	46	37	1.57
44181447--44181617	50	3.4	50	80	4	166	25	12	26	35	1.92
44181492--44181650	25	6.4	25	70	13	103	26	14	27	32	1.95
44181475--44181559	25	3.5	24	72	22	61	22	15	29	32	1.94
44182677--44183797	400	2.8	400	93	1	1847	33	22	13	30	1.92
44189921--44190414	149	3.3	149	77	11	460	42	4	11	42	1.60
44194061--44194117	28	2.0	28	96	0	105	33	17	8	40	1.81
44202220--44202268	4	12.2	4	77	0	53	20	26	4	48	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44207090--44207118	14	2.0	15	93	6	51	3	13	0	82	0.79
44207540--44208184	152	4.3	150	83	9	762	42	5	9	42	1.60
44207540--44208099	303	1.8	303	88	6	855	41	5	9	43	1.60
44208601--44208639	13	2.9	13	85	7	51	20	2	15	61	1.45
44210537--44210755	102	2.2	101	94	0	375	43	9	8	37	1.68
44210690--44210908	58	3.8	58	76	11	254	41	8	9	41	1.68
44210580--44210908	170	2.0	164	89	5	513	42	8	9	39	1.68
44210945--44211004	22	2.7	22	87	7	77	46	1	1	50	1.21
44210930--44210962	16	2.1	16	94	0	57	51	3	0	45	1.16
44213191--44213233	20	2.2	20	84	12	54	16	23	18	41	1.89
44213296--44213334	19	2.1	19	85	9	53	30	2	5	61	1.31
44214089--44214132	5	8.6	5	82	12	54	43	0	0	56	0.99
44215086--44215210	47	2.7	46	85	6	164	16	27	19	36	1.93
44215088--44215211	22	5.3	24	75	13	109	16	26	19	37	1.93
44217255--44217297	19	2.2	20	87	4	61	53	6	0	39	1.28
44218231--44218271	22	2.0	20	85	9	55	43	0	2	53	1.13
44220211--44220305	50	1.9	50	93	0	163	29	13	32	24	1.93
44227580--44227619	21	1.9	21	84	0	53	42	10	15	32	1.79
44234006--44234056	11	4.8	11	75	18	54	39	31	0	29	1.57
44233995--44234056	20	2.9	22	79	13	67	38	30	0	30	1.58
44237922--44237955	15	2.3	15	94	0	59	26	52	11	8	1.67
44240153--44240220	30	2.3	30	82	5	75	44	5	2	47	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44240381--44240444	26	2.5	26	81	0	83	35	20	6	37	1.78
44240381--44240446	13	5.1	13	75	0	69	36	21	6	36	1.78
44241789--44241837	24	2.0	24	92	0	80	40	10	10	38	1.73
44242465--44242536	36	2.0	36	97	0	135	45	5	6	41	1.54
44247826--44247898	24	3.0	24	97	0	137	52	8	12	27	1.67
44255741--44255785	23	2.0	23	84	16	60	44	2	0	53	1.13
44260528--44260565	5	7.8	5	91	5	60	81	0	15	2	0.80
44273112--44273154	9	4.7	9	82	5	50	81	4	13	0	0.84
44273771--44273871	42	2.4	42	90	3	150	29	13	29	26	1.94
44273784--44273852	21	3.3	21	66	18	54	30	13	33	23	1.92
44275181--44275605	50	8.5	50	68	5	248	28	23	25	22	1.99
44275170--44275636	100	4.7	100	88	0	655	29	22	25	22	1.99
44275170--44275665	50	9.9	50	67	3	170	28	22	25	23	1.99
44279966--44280063	27	3.7	27	79	6	110	28	24	11	35	1.90
44282370--44282433	29	2.2	29	83	8	78	70	0	1	28	0.97
44282480--44282530	26	2.0	26	96	3	95	47	17	0	35	1.48
44283355--44283687	165	2.0	166	99	0	659	47	6	9	37	1.61
44284890--44285085	102	1.9	103	97	2	376	38	3	12	44	1.60
44284902--44285109	102	2.0	102	89	0	317	41	1	12	44	1.52
44286918--44287000	16	5.2	16	69	22	68	54	10	0	34	1.36
44286921--44287008	31	2.8	31	93	5	142	54	11	1	32	1.43
44286942--44286996	15	3.6	15	68	22	51	54	12	0	32	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44290582--44290637	28	2.0	29	86	10	80	53	10	3	32	1.53
44291884--44291997	41	2.7	42	90	4	169	33	21	21	23	1.97
44298992--44299028	16	2.2	17	86	13	51	32	0	5	62	1.18
44300482--44300911	133	3.2	130	78	9	429	30	20	15	32	1.94
44302546--44303028	241	2.0	242	99	0	959	43	9	10	36	1.72
44310888--44310936	25	2.0	24	84	8	62	42	0	2	55	1.11
44311793--44311833	8	5.2	8	91	5	66	53	0	0	46	1.00
44327099--44327131	16	2.1	17	88	11	52	54	0	0	45	0.99
44327526--44327559	17	2.0	17	94	0	59	38	0	0	61	0.96
44329168--44329206	17	2.3	17	86	8	53	20	2	2	74	1.06
44330758--44330843	30	3.0	29	85	12	117	43	6	24	25	1.79
44330757--44330844	25	3.1	30	85	12	123	42	6	26	25	1.80
44335312--44335357	15	3.0	16	71	9	51	45	6	23	23	1.76
44337170--44337386	55	3.9	55	87	1	310	26	7	15	51	1.69
44338539--44338662	62	2.0	62	96	0	230	42	8	12	35	1.75
44344662--44344777	30	3.7	29	68	20	81	25	18	27	28	1.98
44346109--44346162	26	2.1	25	90	10	83	44	7	18	29	1.77
44351410--44351594	51	3.7	50	79	6	178	24	17	25	31	1.97
44351410--44351594	101	1.8	102	88	3	284	24	17	25	31	1.97
44351820--44351851	16	2.0	16	93	0	55	59	0	15	25	1.36
44354833--44354979	65	2.3	65	89	2	215	38	10	13	36	1.80
44354898--44355838	132	7.1	132	83	2	994	36	14	16	32	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44355135--44355350	67	3.2	68	69	12	196	37	9	17	35	1.82
44354903--44355843	396	2.4	393	83	4	1151	36	14	16	32	1.89
44355774--44355904	67	2.0	67	83	3	165	34	17	15	32	1.91
44363462--44363497	13	2.7	13	91	4	54	30	2	50	16	1.60
44364797--44364823	13	2.1	13	100	0	54	33	29	7	29	1.85
44370250--44370396	30	5.0	30	67	15	119	46	6	5	40	1.53
44370223--44370398	58	3.0	59	96	3	338	46	6	6	40	1.54
44370225--44370374	28	5.2	28	68	15	117	46	5	6	42	1.51
44378097--44378175	31	2.5	32	85	2	106	35	5	15	44	1.68
44379159--44379240	34	2.4	34	82	8	96	36	6	10	46	1.64

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210