genome.fa.s3.2.7.7.80.10.50.1000.124.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr8
Parameters: 2 7 7 80 10 50 1000
Length:  70076365

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   

This is table  124  of  210  ( 25174 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41676228--41676274	24	2.0	23	87	4	67	76	4	8	10	1.13
41677037--41677153	55	2.1	54	82	7	137	51	4	0	43	1.27
41679952--41679991	18	2.2	18	95	0	71	55	5	35	5	1.44
41680969--41681028	22	2.5	24	78	15	70	15	13	10	61	1.56
41682119--41682143	12	2.1	12	100	0	50	40	8	0	52	1.31
41683804--41683832	2	14.5	2	100	0	58	0	48	0	51	1.00
41688995--41689057	22	2.9	22	80	0	72	30	9	20	39	1.84
41689057--41689132	33	2.3	33	84	4	91	30	21	21	27	1.98
41689140--41689411	29	9.4	29	67	8	106	29	25	22	22	1.99
41689121--41689411	87	3.3	87	79	1	289	29	26	21	22	1.99
41689121--41689392	58	4.7	58	77	5	219	30	26	21	21	1.99
41689379--41689444	34	1.9	34	84	0	87	28	25	25	19	1.99
41689821--41689845	5	5.0	5	100	0	50	60	40	0	0	0.97
41693631--41693679	22	2.3	22	85	3	64	63	4	4	28	1.31
41693887--41693948	19	2.9	21	79	20	67	64	1	4	29	1.23
41696380--41696415	17	2.2	16	90	5	54	80	0	13	5	0.88
41700051--41700083	9	3.8	9	88	8	50	63	0	0	36	0.95
41701337--41701366	15	1.9	16	93	6	53	56	3	0	40	1.16
41701508--41701538	11	2.7	11	95	5	53	70	0	0	29	0.87
41703181--41703275	20	4.8	20	73	0	64	52	10	20	16	1.73
41703181--41703275	40	2.4	40	74	0	100	52	10	20	16	1.73
41703278--41703375	21	4.9	21	71	15	82	52	6	19	22	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41703278--41703376	20	4.9	20	66	16	60	52	6	19	22	1.67
41709654--41709685	8	3.9	8	95	4	55	46	0	0	53	1.00
41709743--41709800	25	2.4	23	80	8	62	74	5	20	0	1.01
41712578--41712629	20	2.6	20	81	6	61	46	3	17	32	1.66
41713013--41713069	21	2.8	21	76	10	64	56	7	12	24	1.61
41715167--41715264	42	2.3	42	79	10	119	16	18	17	47	1.82
41727651--41727717	6	11.5	6	75	9	59	77	4	2	14	1.05
41727654--41727717	17	3.7	17	79	8	67	76	4	3	15	1.08
41727651--41727710	23	2.6	22	84	10	68	76	5	3	15	1.08
41729736--41729774	18	2.1	19	85	4	53	69	0	28	2	1.02
41729812--41729844	6	5.5	6	100	0	66	15	15	51	18	1.77
41729812--41729851	18	2.2	18	90	0	62	15	15	50	20	1.79
41730352--41732259	961	2.0	961	100	0	3816	28	21	17	32	1.96
41737433--41737491	24	2.5	24	97	0	109	13	40	0	45	1.43
41740274--41740484	75	2.8	74	86	2	305	31	27	19	21	1.97
41740428--41740536	27	3.8	27	86	7	137	32	29	20	18	1.96
41741884--41742070	101	1.8	102	88	5	290	24	17	27	31	1.97
41742035--41742059	12	2.1	12	100	0	50	24	16	28	32	1.96
41741880--41742066	51	3.7	50	82	5	234	24	17	27	31	1.97
41742077--41742165	45	2.0	45	90	0	142	25	17	24	31	1.97
41744584--41744640	22	2.7	21	76	7	62	73	12	3	10	1.21
41751511--41751545	18	1.9	18	88	0	52	77	5	2	14	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41751923--41752137	45	4.8	45	97	0	378	36	16	21	25	1.94
41752130--41752253	45	2.8	45	82	2	142	41	15	20	23	1.90
41752651--41752795	73	2.0	73	88	0	218	33	6	19	40	1.76
41755289--41755341	3	17.3	3	96	3	97	66	0	0	33	0.92
41756273--41756352	23	3.5	23	73	11	65	28	13	30	27	1.94
41759064--41759106	23	1.9	23	85	4	61	58	0	6	34	1.25
41759892--41759951	27	2.2	28	82	11	72	40	16	23	20	1.91
41760111--41760223	26	4.3	26	92	4	192	24	18	21	35	1.96
41767038--41767084	18	2.6	19	83	12	64	23	14	0	61	1.33
41767284--41767325	18	2.3	18	87	0	57	26	9	4	59	1.48
41773955--41774304	45	7.8	45	84	5	449	27	16	25	29	1.97
41774331--41774481	51	3.0	51	91	0	248	31	14	24	29	1.95
41774339--41774502	51	3.2	51	87	1	240	31	14	25	29	1.95
41774311--41774502	102	1.9	102	87	2	287	29	15	24	30	1.96
41776181--41776219	18	2.1	19	90	4	62	28	15	2	53	1.55
41777233--41777278	16	2.9	16	73	23	51	41	4	28	26	1.74
41777300--41777388	39	2.3	39	90	1	135	37	15	14	32	1.88
41781725--41781796	32	2.2	32	85	0	99	45	2	26	25	1.67
41781809--41781894	39	2.2	39	89	2	138	37	15	15	32	1.88
41790212--41790281	16	4.4	16	85	0	86	27	31	2	38	1.71
41790735--41790854	64	1.9	64	87	6	181	31	25	14	29	1.94
41792307--41792365	18	3.2	17	77	20	57	40	0	5	54	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41794483--41794535	15	3.5	15	76	20	56	26	7	1	64	1.31
41796163--41796197	18	1.9	18	94	0	61	57	0	0	42	0.99
41797324--41797410	43	2.0	43	97	0	165	36	16	20	26	1.93
41797460--41797533	38	1.9	38	91	5	123	39	20	12	28	1.88
41803670--41803771	43	2.4	43	85	3	145	39	20	15	24	1.92
41807428--41807694	44	5.8	43	70	18	148	27	21	17	33	1.96
41807389--41807694	142	2.2	142	96	0	576	27	20	17	33	1.95
41820175--41820224	19	2.6	19	83	3	64	54	6	4	36	1.44
41824071--41824140	28	2.6	27	80	14	81	68	8	0	22	1.16
41824088--41824139	9	5.4	9	78	13	50	69	11	0	19	1.18
41824059--41824139	20	4.3	19	77	13	69	67	9	0	22	1.19
41824730--41824788	31	1.9	30	86	3	82	62	10	11	15	1.54
41834738--41834825	3	29.3	3	92	0	149	34	1	1	63	1.09
41835487--41835794	110	2.8	110	93	2	503	31	13	18	35	1.90
41836453--41836601	47	3.2	47	70	16	157	44	2	4	48	1.35
41836434--41836613	91	2.0	92	96	1	335	44	3	3	48	1.37
41837952--41837993	15	2.7	16	82	14	52	45	0	2	52	1.13
41837943--41837984	15	2.9	15	82	10	52	47	0	0	52	1.00
41838121--41838225	45	2.5	40	75	18	106	33	28	3	34	1.75
41838207--41838244	16	2.4	16	86	0	58	28	34	2	34	1.71
41842103--41842143	17	2.4	17	87	0	55	58	4	0	36	1.20
41845000--41845100	45	2.2	45	87	0	139	37	15	20	25	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41845016--41845102	45	1.9	45	92	0	147	35	12	21	29	1.91
41854199--41854229	7	4.4	7	100	0	62	12	0	0	87	0.55
41854425--41854467	18	2.3	19	92	4	70	69	4	2	23	1.18
41856594--41856624	15	2.0	16	93	6	55	0	51	41	6	1.27
41856878--41856922	22	2.0	23	82	4	56	40	4	13	42	1.64
41863594--41863622	14	2.0	15	93	6	51	24	62	0	13	1.32
41866777--41866823	23	2.0	23	100	0	94	31	17	25	25	1.97
41867296--41867336	17	2.4	17	83	0	55	70	7	4	17	1.28
41870237--41870261	2	12.5	2	100	0	50	52	0	0	48	1.00
41873362--41873401	20	2.1	19	85	4	53	42	0	0	57	0.98
41881025--41881060	17	2.1	17	100	0	72	5	16	13	63	1.47
41881316--41881446	67	2.0	67	83	1	165	36	19	17	25	1.94
41888878--41888939	20	3.2	20	81	6	74	50	1	9	38	1.45
41888883--41888943	18	3.3	18	81	4	68	50	1	9	37	1.45
41890344--41891013	181	3.7	181	91	1	1044	27	25	18	29	1.98
41890343--41891012	270	2.5	268	86	2	957	27	25	18	29	1.98
41890343--41891013	89	7.5	89	88	2	930	26	25	18	29	1.98
41893247--41893280	13	2.8	12	86	8	50	52	0	17	29	1.45
41906023--41906063	21	2.0	21	85	0	55	31	9	4	53	1.55
41909373--41909436	29	2.2	29	94	0	110	54	14	9	21	1.67
41916615--41916661	24	2.0	24	83	8	60	17	31	0	51	1.46
41919815--41919856	21	2.0	21	85	0	57	54	11	7	26	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41919735--41919903	82	2.1	79	87	6	241	40	13	10	35	1.79
41920557--41920595	18	2.2	18	90	0	60	30	2	7	58	1.39
41933649--41933677	5	5.8	5	100	0	58	20	0	0	79	0.74
41934078--41934117	19	2.0	20	95	4	73	30	10	25	35	1.88
41935223--41935346	25	5.0	25	78	9	96	23	16	26	33	1.96
41935264--41935418	24	6.4	24	72	11	118	23	14	25	35	1.94
41935284--41935434	49	3.1	49	79	2	178	23	13	27	35	1.93
41936151--41936192	9	4.7	9	79	8	50	45	23	9	21	1.81
41936192--41936263	37	1.9	37	88	0	108	45	13	2	37	1.59
41936392--41936508	39	3.0	39	96	1	209	18	2	28	50	1.60

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210