genome.fa.s3.2.7.7.80.10.50.1000.128.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr8
Parameters: 2 7 7 80 10 50 1000
Length:  70076365

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   

This is table  128  of  210  ( 25174 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42761650--42762262	267	2.3	267	90	0	938	26	25	20	27	1.99
42768553--42768595	19	2.3	19	100	0	86	16	13	13	55	1.69
42774138--42774167	15	2.0	15	93	0	51	66	16	0	16	1.25
42774591--42774642	21	2.4	21	87	3	77	67	5	0	26	1.13
42775160--42775185	12	2.2	12	100	0	52	61	26	0	11	1.30
42782682--42782807	30	4.2	30	82	1	137	33	14	18	34	1.91
42792689--42792733	18	2.6	17	83	13	56	71	2	4	22	1.15
42797469--42797661	50	3.8	50	87	6	273	20	30	22	26	1.98
42797469--42797661	100	1.9	101	89	5	302	20	30	22	26	1.98
42811120--42811147	2	14.0	2	100	0	56	50	0	50	0	1.00
42815996--42816035	21	2.0	20	90	5	62	50	0	2	47	1.14
42818723--42818770	24	1.9	26	83	8	64	22	12	16	47	1.80
42821732--42821792	21	2.9	21	92	0	95	45	14	24	14	1.83
42823574--42823632	26	2.3	26	81	0	73	33	22	23	20	1.97
42823714--42823777	25	2.6	25	89	0	92	39	20	26	14	1.90
42828714--42828775	23	2.7	23	92	0	97	45	16	8	30	1.76
42831740--42832226	50	9.8	50	84	4	590	27	19	30	22	1.98
42833009--42833102	47	2.0	47	100	0	188	8	12	29	48	1.71
42840207--42840247	18	2.3	18	80	12	50	24	0	2	73	0.96
42856479--42856604	57	2.2	57	87	4	173	49	4	15	30	1.65
42863305--42863330	11	2.4	11	100	0	52	61	0	0	38	0.96
42863327--42863355	8	3.6	8	100	0	58	75	0	0	24	0.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42878589--42878687	16	6.2	16	84	4	119	27	26	5	41	1.76
42878589--42878687	32	3.1	32	88	0	144	27	26	5	41	1.76
42878760--42878801	17	2.5	17	84	3	59	33	4	9	52	1.55
42881040--42881589	291	1.9	291	89	0	850	36	14	15	34	1.87
42882865--42882907	22	1.9	23	85	4	61	39	9	2	48	1.48
42887288--42887328	19	2.2	19	86	8	57	12	7	2	78	1.06
42888538--42888809	131	2.1	131	95	0	481	37	14	14	33	1.87
42889335--42889374	19	2.2	18	86	4	53	15	5	17	62	1.49
42894365--42895023	44	14.7	43	70	16	192	32	20	20	27	1.97
42894448--42894564	45	2.6	44	84	7	155	30	20	22	26	1.98
42894367--42894564	89	2.3	87	85	7	249	29	21	22	26	1.99
42894369--42894622	132	1.9	131	80	9	293	32	19	22	25	1.97
42894539--42894852	137	2.3	137	86	3	429	34	18	19	28	1.95
42895805--42895846	5	8.8	5	89	5	61	16	2	0	80	0.81
42896670--42896709	16	2.5	15	84	11	53	20	7	0	72	1.08
42896950--42897222	131	2.1	131	97	0	510	37	14	14	33	1.87
42906175--42906214	14	2.8	14	88	11	55	7	7	0	85	0.76
42908574--42908613	14	2.8	14	88	11	55	7	7	0	85	0.76
42912737--42912776	19	2.1	19	86	9	55	42	2	0	55	1.13
42914655--42914749	40	2.4	38	88	8	145	37	24	20	17	1.93
42914783--42914973	41	4.7	41	90	0	274	23	19	25	31	1.98
42915317--42915349	14	2.3	15	94	5	59	30	0	33	36	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42915327--42915423	42	2.3	43	78	5	99	24	1	35	39	1.63
42915606--42915676	14	4.9	14	68	3	52	22	0	42	35	1.54
42915758--42915828	14	4.9	14	68	3	52	22	0	42	35	1.54
42915519--42915861	152	2.3	152	100	0	686	25	0	30	43	1.59
42915872--42915910	7	5.6	7	87	0	60	17	0	48	33	1.48
42916033--42916064	14	2.3	14	94	0	55	21	0	46	31	1.52
42916033--42916071	14	2.8	13	85	14	51	20	0	46	33	1.51
42918910--42918939	15	2.0	15	100	0	60	13	6	20	60	1.55
42919379--42919416	19	2.0	19	85	10	51	5	0	26	68	1.11
42920050--42920087	19	2.0	19	85	10	51	5	0	26	68	1.11
42926351--42926535	46	4.0	46	94	0	325	34	9	27	28	1.88
42929611--42929674	24	2.6	24	80	16	69	18	15	6	59	1.57
42932800--42933607	132	6.2	132	83	3	918	28	18	24	29	1.98
42933382--42933560	44	4.1	45	72	12	138	31	17	23	27	1.97
42932787--42933578	261	3.0	259	80	5	943	28	17	24	29	1.97
42932801--42933607	393	2.1	393	91	0	1303	28	18	24	29	1.98
42934489--42935004	132	3.9	131	86	3	603	28	18	24	28	1.98
42935043--42935187	50	2.9	50	79	8	168	31	24	20	24	1.98
42935286--42935455	43	3.9	44	75	6	175	26	18	30	25	1.98
42935292--42935492	88	2.3	88	92	0	339	26	18	29	25	1.98
42935306--42935516	88	2.4	88	87	1	253	28	17	28	25	1.97
42937428--42937466	13	3.0	14	89	10	57	74	0	5	20	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42939810--42939836	6	4.5	6	100	0	54	18	0	0	81	0.69
42941022--42941061	21	1.9	21	84	0	53	35	2	2	60	1.24
42941197--42941228	17	1.9	17	93	6	57	50	0	9	40	1.35
42942916--42943011	47	2.0	47	97	0	183	15	18	22	42	1.88
42942997--42943052	21	2.8	21	86	10	73	14	26	19	39	1.90
42948185--42948341	42	3.6	42	82	6	170	47	8	11	32	1.69
42948208--42948285	23	3.5	22	71	15	63	50	8	8	32	1.65
42948377--42948528	43	3.4	45	75	10	143	53	14	4	26	1.60
42949114--42949153	14	3.1	13	86	10	55	22	17	10	50	1.76
42949114--42949163	12	4.0	12	82	10	55	26	16	12	46	1.81
42955788--42955833	5	9.2	5	83	9	58	17	6	0	76	1.00
42960045--42960433	31	12.8	31	76	11	324	32	7	16	42	1.76
42960000--42960433	61	7.2	61	74	12	310	32	7	17	42	1.78
42960001--42960433	182	2.4	182	86	5	578	32	7	17	42	1.78
42960000--42960433	92	4.8	92	88	5	575	32	7	17	42	1.78
42960001--42960458	31	15.2	30	74	14	257	32	7	17	42	1.78
42964445--42964495	26	2.0	26	84	7	68	45	3	15	35	1.65
42967317--42967414	48	2.1	48	92	1	162	11	24	3	61	1.44
42969445--42969484	3	13.3	3	100	0	80	32	35	0	32	1.58
42975772--42976370	299	2.0	300	99	0	1191	39	13	8	39	1.75
42976549--42976639	45	2.0	44	87	6	130	31	4	28	35	1.77
42982298--42982341	22	2.0	22	82	8	54	59	2	9	29	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42982543--42982585	18	2.3	18	92	4	68	65	4	0	30	1.13
42982553--42982603	26	1.9	27	84	11	70	68	3	1	25	1.17
42982552--42982592	18	2.3	18	86	0	55	73	2	0	24	0.96
42985150--42985187	20	1.9	20	84	10	51	60	15	0	23	1.35
42989008--42989032	13	1.9	13	100	0	50	76	0	8	16	1.02
42989614--42990181	126	4.5	125	84	3	703	30	15	22	30	1.95
42993379--42993949	22	26.1	22	85	5	707	24	0	30	44	1.56
42993379--42993919	43	12.5	43	86	5	700	24	0	30	44	1.56
42993379--42993919	65	8.3	65	86	5	720	24	0	30	44	1.56
42994536--42994577	18	2.3	18	83	0	57	47	7	28	16	1.73
42995372--42995409	20	1.9	20	84	10	51	55	7	2	34	1.43
42997376--42997473	51	1.9	51	85	4	135	43	4	25	26	1.72
42997435--42997511	11	6.9	11	69	24	54	42	2	29	24	1.68
42997437--42997511	22	3.4	21	77	14	71	42	2	30	24	1.68
43000616--43000640	5	5.0	5	100	0	50	80	0	0	20	0.72
43002454--43002496	22	2.0	22	85	0	59	55	9	9	25	1.61
43002503--43002561	22	2.7	22	84	7	68	74	3	11	10	1.18
43003300--43003402	38	2.7	39	88	7	142	15	5	22	56	1.61
43004196--43004303	11	10.2	11	71	15	66	54	7	0	37	1.29
43004162--43004352	84	2.3	84	90	3	339	50	5	2	41	1.38
43004172--43004333	42	3.9	42	100	0	324	51	6	0	41	1.28
43007302--43007349	25	1.9	25	100	0	96	39	4	8	47	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43007421--43007454	16	2.1	16	94	0	59	50	5	2	41	1.42
43009517--43009565	4	12.2	4	95	0	89	26	0	24	48	1.51
43012330--43012466	43	3.2	42	79	11	138	30	27	14	27	1.95
43012344--43012466	43	2.8	44	82	6	144	30	26	16	26	1.97
43012793--43012930	66	2.1	66	82	5	163	15	22	17	44	1.85
43017091--43017147	29	2.0	29	100	0	114	31	14	14	40	1.85
43021306--43021331	9	2.9	9	100	0	52	34	0	19	46	1.50
43021858--43021905	25	1.9	25	95	0	87	56	2	8	33	1.41
43025087--43025183	7	13.7	7	74	10	72	40	39	3	17	1.65
43025087--43025144	15	4.0	14	78	14	64	36	44	1	17	1.59

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210