genome.fa.s3.2.7.7.80.10.50.1000.186.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr8
Parameters: 2 7 7 80 10 50 1000
Length:  70076365

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   

This is table  186  of  210  ( 25174 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61690445--61690490	10	4.2	11	81	13	51	78	0	21	0	0.76
61690647--61690684	12	2.9	14	84	15	62	31	44	18	5	1.72
61690739--61690782	14	3.2	14	80	3	54	77	0	20	2	0.88
61690736--61690782	24	2.0	24	86	0	67	78	0	19	2	0.85
61690958--61691006	5	9.6	5	88	4	71	34	2	0	63	1.06
61690958--61691003	16	2.9	16	93	3	76	36	2	0	60	1.09
61690958--61691007	21	2.4	21	90	3	75	34	2	0	64	1.05
61690957--61691006	26	1.9	26	91	0	82	34	2	0	64	1.05
61691153--61691233	19	4.4	19	73	17	64	39	17	9	33	1.83
61691171--61691231	19	3.2	18	83	6	68	39	14	9	36	1.80
61691171--61691233	20	3.3	19	82	8	74	39	14	9	36	1.78
61691179--61691231	19	2.7	20	88	8	74	37	16	11	33	1.85
61691341--61691584	17	13.9	18	73	10	168	30	11	13	43	1.80
61691341--61691568	35	6.5	35	74	13	177	31	12	13	42	1.81
61691361--61691522	52	3.1	52	79	7	168	33	13	12	40	1.82
61691378--61691612	17	13.5	17	72	13	126	28	12	12	45	1.79
61692762--61692852	39	2.3	40	90	1	148	68	0	3	28	1.06
61693057--61693144	40	2.2	40	77	2	97	36	15	14	32	1.89
61693344--61693457	40	2.9	40	88	5	169	33	22	23	20	1.97
61693343--61693479	40	3.4	40	81	8	163	36	22	22	18	1.95
61693519--61693750	41	5.7	41	88	2	358	21	21	26	30	1.98
61694090--61694115	7	3.7	7	100	0	52	15	0	53	30	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61694211--61694248	13	2.8	13	81	18	51	13	0	47	39	1.42
61694159--61694302	74	1.9	76	85	2	202	28	1	26	43	1.63
61694290--61694314	7	3.6	7	100	0	50	16	0	52	32	1.44
61694091--61694485	199	2.0	199	100	0	790	29	2	27	41	1.67
61694410--61694447	13	2.8	13	81	18	51	13	0	47	39	1.42
61695386--61695467	38	2.2	38	88	0	119	20	14	8	56	1.65
61719743--61719805	32	1.9	33	84	12	85	3	17	3	76	1.05
61724199--61724227	3	9.7	3	100	0	58	68	31	0	0	0.89
61724444--61724524	27	3.0	27	87	3	101	22	33	20	23	1.97
61724458--61724525	27	2.5	27	90	4	102	20	32	22	25	1.98
61730659--61730683	6	4.2	6	100	0	50	16	0	0	84	0.63
61731121--61731153	11	2.9	12	86	13	52	33	0	0	66	0.92
61730909--61731390	245	2.0	246	89	1	734	32	15	20	30	1.94
61731378--61731411	16	2.1	16	88	0	50	52	2	0	44	1.16
61735112--61735151	12	3.7	10	87	9	53	40	2	2	55	1.27
61735112--61735178	22	3.0	21	82	10	71	41	1	2	53	1.25
61740185--61740233	17	2.9	17	81	0	53	30	0	8	61	1.25
61771551--61771587	19	1.9	19	88	0	56	56	2	8	32	1.43
61773321--61773579	18	13.8	19	71	14	110	41	11	12	33	1.79
61773404--61773437	17	1.9	18	94	5	61	50	11	11	26	1.73
61773509--61773579	19	3.9	17	73	10	61	43	14	14	28	1.83
61773598--61773645	21	2.2	22	92	3	80	33	12	16	37	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61773644--61773730	17	5.0	17	66	13	52	39	11	13	35	1.81
61773644--61773737	35	2.7	36	83	8	106	37	11	12	38	1.80
61773463--61773721	146	1.8	141	82	6	333	40	12	13	33	1.82
61774208--61774250	19	2.2	19	83	4	50	72	2	4	20	1.14
61774425--61774480	13	4.1	13	82	11	67	3	17	0	78	0.89
61774448--61774489	17	2.5	17	84	3	50	0	23	0	76	0.79
61774435--61774494	29	2.1	29	81	9	70	1	23	0	75	0.90
61774728--61774786	23	2.6	23	91	0	91	8	10	54	27	1.63
61775133--61775209	30	2.6	30	87	2	102	48	3	16	31	1.65
61775100--61775239	30	4.7	30	73	11	101	43	8	17	30	1.79
61776113--61776439	152	2.1	154	96	1	595	55	6	10	28	1.57
61776427--61776512	44	2.0	42	80	13	95	52	3	8	36	1.48
61776568--61776626	25	2.4	25	83	13	77	50	1	8	38	1.43
61776672--61776723	24	2.2	25	79	10	63	61	3	9	25	1.44
61782963--61782991	13	2.2	13	100	0	58	55	0	6	37	1.27
61791484--61791518	9	3.9	9	100	0	70	22	11	0	65	1.24
61799396--61799423	5	5.6	5	100	0	56	82	0	0	17	0.68
61799980--61800004	11	2.3	11	100	0	50	36	24	0	40	1.55
61808125--61808172	24	2.0	23	88	4	69	58	0	8	33	1.28
61815670--61815748	21	3.7	21	77	5	79	39	24	21	15	1.91
61815710--61815767	23	2.5	23	86	5	73	39	25	17	17	1.91
61815820--61815861	12	3.8	12	87	12	63	61	4	0	33	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61818178--61818220	20	2.2	20	100	0	86	46	18	0	34	1.50
61822699--61822729	8	3.9	8	100	0	62	48	0	0	51	1.00
61828275--61828301	4	6.8	4	100	0	54	51	0	0	48	1.00
61830646--61830711	30	2.2	31	83	2	80	63	6	4	25	1.37
61846987--61847029	12	3.6	12	87	6	61	34	16	13	34	1.88
61846987--61847036	12	4.2	12	80	10	57	34	14	12	40	1.82
61849404--61849450	21	2.1	23	88	7	71	36	0	4	59	1.17
61850630--61850656	3	9.0	3	100	0	54	0	0	33	66	0.92
61857603--61857644	20	2.0	21	82	13	52	71	2	0	26	0.98
61866998--61867032	2	18.5	2	88	11	56	51	0	0	48	1.00
61882261--61882332	31	2.4	30	81	4	90	34	9	12	43	1.76
61885527--61885596	31	2.2	32	80	12	83	28	14	7	50	1.69
61885848--61886065	108	2.0	109	98	1	420	39	8	6	45	1.60
61919533--61919564	17	2.0	17	88	11	50	50	0	6	43	1.27
61923807--61923831	13	1.9	13	100	0	50	24	4	8	64	1.38
61927503--61927545	17	2.6	17	88	3	70	37	0	9	53	1.33
61928193--61928260	29	2.3	31	80	16	81	50	5	11	32	1.63
61932233--61932346	54	2.1	55	93	3	194	28	14	34	21	1.94
61933058--61933098	21	2.0	21	95	0	73	41	14	19	24	1.89
61933164--61933200	16	2.3	17	86	13	60	62	0	0	37	0.96
61933495--61933529	18	1.9	18	88	0	52	62	5	0	31	1.18
61933514--61933573	9	6.6	9	72	9	50	63	3	0	33	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61933501--61933574	10	8.0	9	72	15	62	63	4	0	32	1.13
61933495--61933573	19	4.3	18	75	7	70	63	5	0	31	1.16
61933494--61933573	28	2.9	27	75	18	92	62	5	0	32	1.17
61938710--61938744	17	2.1	17	94	0	61	2	0	11	85	0.69
61942980--61943009	10	3.0	10	90	0	51	50	13	0	36	1.42
61945079--61945112	16	2.1	16	94	0	59	26	20	17	35	1.95
61945215--61945253	20	1.9	21	85	15	55	12	10	2	74	1.17
61946045--61946071	4	6.8	4	100	0	54	22	0	0	77	0.76
61953286--61953320	17	1.9	19	88	11	56	71	0	0	28	0.86
61966976--61967036	25	2.5	25	97	2	115	37	3	0	59	1.14
61971128--61971185	30	1.9	29	83	13	73	48	0	0	51	1.00
61971558--61971596	20	1.9	21	94	5	71	61	5	0	33	1.18
61978264--61978433	83	2.0	84	98	1	333	38	8	4	48	1.54
61979514--61979551	2	19.0	2	100	0	76	50	0	50	0	1.00
61983174--61983201	14	2.0	14	100	0	56	35	7	14	42	1.73
61988940--61989111	61	2.9	57	79	11	166	22	15	13	48	1.80
61996038--61996077	3	13.3	3	100	0	80	35	32	0	32	1.58
61996351--61996377	13	2.1	13	100	0	54	0	0	7	92	0.38
61996594--61996636	3	14.3	3	82	0	50	4	37	2	55	1.33
61997384--61997446	9	6.7	9	73	10	54	9	36	22	31	1.86
61997385--61997437	15	3.5	15	78	0	52	7	37	22	32	1.82
61997535--61997605	3	23.7	3	83	0	61	5	38	21	35	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61998549--61998613	9	7.2	9	75	0	67	26	13	23	36	1.92
62001857--62001920	25	2.5	26	75	7	69	39	0	1	59	1.07
62002258--62002301	21	2.1	21	91	0	70	70	0	0	29	0.88
62004537--62004588	26	2.0	26	100	0	104	23	26	11	38	1.89
62015035--62015061	13	2.1	13	100	0	54	48	14	0	37	1.45
62019787--62020008	110	2.0	111	99	0	437	41	15	9	33	1.80
62020911--62021016	56	1.9	56	88	3	160	44	22	8	24	1.80
62020842--62021127	156	1.8	157	83	4	380	43	19	10	26	1.83
62020967--62021350	105	3.8	102	80	6	438	40	20	11	26	1.87
62020967--62021419	105	4.6	100	76	9	373	41	20	12	25	1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210