genome.fa.s3.2.7.7.80.10.50.1000.31.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr8
Parameters: 2 7 7 80 10 50 1000
Length:  70076365

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   

This is table  31  of  210  ( 25174 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11072924--11072949	7	3.7	7	100	0	52	26	0	15	57	1.38
11073596--11073631	18	2.0	18	94	0	63	22	30	5	41	1.76
11074135--11074207	23	3.2	22	74	18	69	49	23	0	27	1.50
11074459--11074671	29	7.5	29	86	6	303	46	29	0	23	1.52
11074459--11074669	58	3.7	58	88	8	335	47	28	0	23	1.52
11074459--11074657	81	2.4	81	88	5	290	47	28	0	23	1.52
11074459--11074669	110	1.9	111	95	0	379	47	28	0	23	1.52
11074678--11074740	19	3.4	19	69	20	60	39	14	1	44	1.55
11074676--11074789	37	3.1	37	96	0	201	38	10	4	46	1.58
11074716--11074779	19	3.4	19	72	20	62	39	10	3	46	1.55
11077555--11077900	125	2.8	125	94	0	602	34	22	15	27	1.94
11086010--11086083	21	3.5	21	80	10	89	21	33	12	32	1.90
11091465--11091523	23	2.4	24	83	8	66	40	6	6	45	1.57
11098929--11098964	16	2.2	16	90	0	54	61	2	0	36	1.11
11099616--11099644	9	3.2	9	100	0	58	68	0	0	31	0.89
11100258--11100288	9	3.4	9	90	0	53	38	22	12	25	1.90
11107947--11108007	27	2.3	27	100	0	122	18	40	9	31	1.83
11113950--11113982	14	2.4	14	90	5	50	33	3	0	63	1.10
11114674--11114711	18	2.0	20	90	10	62	36	0	2	60	1.11
11118329--11118358	5	5.8	5	96	4	51	80	3	0	16	0.85
11120970--11121007	16	2.4	16	90	0	58	31	0	34	34	1.58
11125336--11125402	17	4.1	17	73	21	54	73	2	0	23	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11133086--11133163	38	2.1	38	87	4	113	38	2	10	48	1.51
11140223--11140266	21	2.1	21	87	4	63	56	2	11	29	1.46
11144513--11144644	31	4.2	31	80	4	140	49	15	6	28	1.70
11144504--11144621	62	1.9	62	87	0	173	47	16	5	30	1.70
11144511--11144642	62	2.1	62	82	4	156	48	15	6	28	1.71
11145898--11145933	17	2.0	19	89	10	58	58	19	0	22	1.40
11145949--11145987	20	2.0	20	85	10	53	53	30	5	10	1.56
11148371--11148453	31	2.7	31	76	9	89	24	16	31	27	1.97
11156416--11156440	4	6.2	4	100	0	50	24	48	0	28	1.52
11156574--11156825	126	2.0	122	94	3	443	43	7	22	27	1.79
11159112--11159577	233	2.0	233	100	0	932	39	15	19	25	1.91
11168081--11168146	13	4.9	14	68	18	50	57	1	0	40	1.08
11168084--11168146	27	2.3	28	76	13	69	57	1	0	41	1.08
11168081--11168137	15	4.1	15	76	19	52	56	1	0	42	1.10
11168621--11168721	34	3.0	32	80	9	112	45	0	10	43	1.39
11168613--11168739	34	3.7	33	78	11	105	42	0	13	43	1.49
11172373--11172409	18	2.1	18	89	0	56	40	5	29	24	1.77
11172378--11172415	18	2.1	18	90	0	58	39	7	26	26	1.83
11172960--11172985	7	3.7	7	100	0	52	57	15	0	26	1.38
11173914--11174427	255	2.0	256	99	0	1021	45	8	11	34	1.71
11176536--11176674	44	3.2	44	97	0	260	34	9	12	43	1.75
11187116--11187179	14	4.4	14	75	21	51	29	1	3	65	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11187172--11187250	34	2.3	35	77	12	83	32	5	2	59	1.33
11188495--11188559	32	2.0	32	96	0	121	27	30	9	32	1.88
11199004--11199061	9	6.1	9	78	13	55	41	0	1	56	1.09
11199004--11199061	19	3.1	18	78	14	55	41	0	1	56	1.09
11199004--11199039	19	1.9	20	88	11	58	41	0	0	58	0.98
11203273--11204185	458	2.0	455	95	1	1648	30	16	20	32	1.95
11213984--11214032	19	2.5	19	83	3	62	55	4	10	30	1.52
11214998--11215023	9	2.9	9	100	0	52	46	0	0	53	1.00
11227889--11227937	15	3.3	15	79	0	62	38	18	18	24	1.93
11227871--11227940	30	2.3	30	87	0	95	41	18	15	24	1.89
11242006--11242072	34	1.9	35	90	3	109	35	10	8	44	1.70
11242653--11242683	7	4.4	7	95	0	53	32	41	25	0	1.56
11243989--11244132	43	3.4	42	84	6	177	25	23	20	30	1.98
11249816--11249879	13	4.8	13	73	16	60	32	0	20	46	1.51
11249809--11249855	15	3.3	15	82	11	71	36	0	17	46	1.48
11249809--11249879	28	2.6	28	89	6	103	33	0	19	46	1.50
11249821--11249887	17	4.1	17	77	13	77	31	0	20	47	1.51
11249825--11250227	9	44.4	9	68	17	133	33	1	19	45	1.60
11249890--11249933	5	9.0	5	97	2	81	40	0	18	40	1.50
11250023--11250218	47	4.1	47	94	2	322	34	0	19	45	1.54
11250287--11250364	9	8.6	9	76	8	77	35	0	17	46	1.49
11250287--11250407	27	4.4	27	79	9	113	35	0	16	47	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11250562--11250680	38	3.2	38	64	13	102	51	5	6	36	1.50
11251324--11251383	23	2.5	24	86	5	95	25	13	15	46	1.81
11253304--11253553	7	34.9	7	66	10	76	43	34	2	20	1.64
11253382--11253440	22	2.7	23	84	7	70	42	32	1	23	1.64
11253422--11253456	15	2.4	15	90	4	54	45	34	0	20	1.51
11253422--11253542	49	2.4	48	78	6	125	45	28	1	23	1.63
11253836--11253940	40	2.6	39	86	5	147	25	24	21	27	2.00
11253876--11254282	114	3.6	114	87	5	581	28	22	18	29	1.98
11254217--11254343	40	3.2	40	89	0	182	22	25	22	29	1.99
11256689--11256735	24	2.0	24	84	16	62	48	17	0	34	1.47
11262624--11262680	25	2.4	25	80	14	66	56	3	1	38	1.27
11277203--11277260	16	3.7	15	72	9	53	68	5	6	18	1.31
11277234--11277268	16	2.2	16	89	0	52	82	5	2	8	0.91
11277249--11277546	158	1.9	159	87	3	440	55	9	8	26	1.60
11277518--11277567	24	2.0	25	96	3	93	50	16	0	34	1.45
11277561--11277883	159	2.1	159	88	4	478	27	8	9	53	1.63
11277983--11278046	27	2.4	27	86	5	85	10	35	31	21	1.88
11283043--11283078	18	1.9	18	88	5	54	58	2	0	38	1.13
11283842--11283932	42	2.2	42	81	0	101	30	24	24	20	1.99
11284454--11284529	3	25.3	3	100	0	152	67	0	0	32	0.91
11286891--11286970	40	2.0	40	83	9	101	30	25	21	23	1.99
11300441--11300512	18	4.4	16	76	10	58	38	0	1	59	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11300473--11300518	6	7.7	6	100	0	92	32	0	0	67	0.91
11302351--11302397	11	4.3	11	77	17	53	68	19	2	10	1.30
11305761--11305797	19	2.1	19	85	10	51	45	10	8	35	1.69
11316081--11316165	41	2.0	42	91	6	138	34	15	0	50	1.44
11320271--11320312	19	2.1	19	86	8	57	35	2	4	57	1.33
11320308--11320337	16	1.9	16	93	6	53	53	10	0	36	1.35
11324827--11324873	2	23.5	2	91	0	76	0	48	4	46	1.21
11329648--11329679	2	16.0	2	100	0	64	50	0	50	0	1.00
11329727--11329751	3	8.3	3	100	0	50	36	0	64	0	0.94
11330480--11330508	3	9.7	3	100	0	58	65	0	0	34	0.93
11331980--11332021	22	1.9	22	85	0	57	35	0	2	61	1.09
11332620--11332745	9	13.0	9	69	15	74	58	2	2	36	1.24
11332593--11332662	30	2.5	30	80	15	78	61	1	0	37	1.05
11332614--11332745	19	6.7	19	68	16	74	59	3	2	35	1.26
11332621--11332707	21	4.4	21	72	13	60	58	1	2	37	1.18
11332661--11332707	21	2.1	23	84	7	62	55	2	4	38	1.31
11332601--11332744	28	5.0	28	65	20	64	57	2	2	37	1.25
11333137--11333335	100	2.0	101	98	1	391	34	9	10	46	1.69
11355908--11355933	13	2.0	13	100	0	52	0	0	92	7	0.39
11355909--11355936	14	2.0	14	100	0	56	0	0	92	7	0.37
11358494--11358518	5	5.0	5	100	0	50	80	0	0	20	0.72
11364510--11364581	28	2.6	28	91	4	110	40	12	1	45	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11364661--11364727	27	2.5	27	92	0	107	26	29	28	14	1.96
11364846--11364943	4	24.5	4	74	17	71	67	0	32	0	0.91
11364840--11364966	21	6.0	21	73	20	97	66	0	33	0	0.92
11364853--11364943	17	5.7	15	74	20	71	67	0	32	0	0.91
11364870--11364972	51	2.0	52	81	16	124	67	0	32	0	0.90
11364849--11364977	63	2.1	62	88	10	192	66	0	33	0	0.92
11364867--11364959	33	3.0	30	71	15	91	65	0	34	0	0.93
11365312--11365336	13	1.9	13	100	0	50	64	8	20	8	1.46
11368057--11368083	3	9.0	3	100	0	54	66	33	0	0	0.92
11368082--11368116	3	11.3	3	87	6	52	62	5	0	31	1.18

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210