genome.fa.s3.2.7.7.80.10.50.1000.187.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr8
Parameters: 2 7 7 80 10 50 1000
Length:  70076365

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   

This is table  187  of  210  ( 25174 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62021252--62021417	91	1.8	91	86	2	244	43	19	13	22	1.86
62022193--62022234	20	2.0	21	86	9	59	45	0	4	50	1.23
62029435--62029476	20	2.2	20	87	12	61	59	0	2	38	1.10
62029486--62029537	20	2.6	22	77	17	60	50	5	5	38	1.51
62029675--62029745	21	3.4	21	76	9	83	33	1	2	61	1.19
62029727--62029766	18	2.2	18	86	8	55	25	0	2	72	0.97
62041615--62041646	17	1.9	16	93	6	55	18	31	6	43	1.75
62041915--62041968	2	27.0	2	88	0	72	50	0	46	3	1.19
62046367--62046408	2	21.0	2	100	0	84	50	0	50	0	1.00
62049148--62049414	51	5.2	50	85	4	363	29	23	15	31	1.95
62049155--62049412	102	2.5	102	94	0	453	30	23	15	31	1.95
62049103--62049408	153	2.1	145	85	6	398	30	23	15	31	1.95
62056160--62056256	45	2.2	45	87	7	135	21	19	18	40	1.92
62060955--62061013	28	2.1	27	81	6	64	20	8	6	64	1.44
62068186--62068253	28	2.4	28	80	0	82	29	19	13	38	1.89
62068970--62069002	11	3.1	11	91	4	50	51	0	0	48	1.00
62068974--62069005	11	2.9	11	95	0	55	53	0	0	46	1.00
62069342--62069408	11	6.4	11	74	20	63	56	1	2	38	1.24
62069346--62069424	40	2.0	40	97	0	149	54	1	2	41	1.22
62069327--62069399	21	3.6	20	71	14	60	56	1	2	39	1.22
62078740--62078767	4	7.0	4	100	0	56	75	0	0	25	0.81
62079811--62079835	10	2.5	10	100	0	50	72	0	0	28	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62082022--62082057	15	2.3	16	90	4	56	41	25	8	25	1.83
62082343--62082844	251	2.0	251	99	0	988	40	10	6	41	1.66
62085996--62086043	15	3.2	15	78	0	51	56	2	2	39	1.23
62091090--62091114	13	1.9	13	100	0	50	68	0	0	32	0.90
62092867--62092922	28	2.0	28	100	0	112	42	21	10	25	1.85
62098051--62098092	11	3.9	11	76	17	52	57	0	2	40	1.12
62098641--62098707	29	2.3	29	76	0	71	35	2	11	49	1.55
62100015--62100092	18	4.5	17	69	15	70	44	2	2	50	1.29
62104980--62105016	16	2.2	18	85	9	51	48	0	0	51	1.00
62110094--62110122	14	2.0	15	93	6	51	48	10	0	41	1.37
62114003--62114054	24	2.2	24	92	0	86	51	9	1	36	1.46
62123392--62123522	65	2.0	65	95	0	235	45	6	6	41	1.55
62125853--62125935	39	2.2	39	97	2	159	67	0	2	30	1.03
62125916--62125945	8	3.8	8	100	0	60	86	0	0	13	0.57
62130838--62130948	36	3.1	36	97	0	213	24	18	26	30	1.98
62132417--62132502	40	2.2	40	95	0	154	36	8	18	37	1.81
62132801--62132853	17	3.1	17	100	0	106	45	30	16	7	1.75
62144958--62145026	11	6.4	11	71	25	58	37	2	0	59	1.12
62144968--62145030	14	4.5	14	72	21	60	36	3	0	60	1.13
62144950--62145030	42	1.9	42	100	0	162	37	2	0	60	1.10
62144967--62145041	31	2.4	32	84	13	102	38	2	0	58	1.12
62145009--62145048	21	1.9	21	89	0	62	37	2	0	60	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62145008--62145066	22	2.8	21	80	14	59	42	1	1	54	1.20
62145183--62145251	11	6.4	11	71	25	58	37	2	0	59	1.12
62145193--62145255	14	4.5	14	72	21	60	36	3	0	60	1.13
62145192--62145266	31	2.4	32	84	13	102	38	2	0	58	1.12
62145175--62145255	42	1.9	42	100	0	162	37	2	0	60	1.10
62145234--62145273	21	1.9	21	89	0	62	37	2	0	60	1.11
62145233--62145291	22	2.8	21	80	14	59	42	1	1	54	1.20
62145480--62145531	26	2.0	26	100	0	104	26	7	11	53	1.63
62145492--62145619	58	2.2	58	80	4	143	26	13	12	47	1.78
62145992--62146104	59	1.9	60	83	5	149	53	13	11	22	1.71
62146063--62146144	32	2.6	31	84	5	94	45	12	19	23	1.84
62146129--62146496	184	2.0	184	98	1	720	40	10	12	36	1.78
62148353--62148402	25	2.0	24	85	11	66	72	2	12	14	1.22
62158859--62158922	31	2.1	31	96	0	119	42	10	6	40	1.65
62168096--62168219	61	2.0	63	84	6	164	31	10	11	46	1.73
62168758--62168865	11	10.4	11	70	24	74	60	0	2	37	1.12
62168749--62168932	40	4.5	40	81	14	241	62	0	3	34	1.11
62168810--62168896	31	2.8	32	81	10	103	64	0	3	32	1.10
62168884--62168925	9	4.8	9	80	14	52	78	0	0	21	0.75
62169570--62169646	31	2.8	26	68	21	66	46	14	12	25	1.80
62171331--62171398	31	2.1	33	83	5	86	41	10	11	36	1.76
62172920--62172961	11	3.7	11	79	14	50	50	4	0	45	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62176660--62176719	28	2.1	29	87	6	88	68	3	0	28	1.05
62177803--62177828	5	5.2	5	100	0	52	23	19	19	38	1.93
62177918--62177945	5	5.6	5	100	0	56	17	21	17	42	1.89
62181418--62181463	23	2.1	22	88	8	67	30	0	2	67	1.03
62187827--62187876	22	2.3	23	89	10	86	56	20	16	8	1.65
62189016--62189058	21	2.0	21	91	8	70	34	9	4	51	1.55
62199019--62199078	11	5.5	11	77	0	57	25	6	3	65	1.33
62199009--62199083	33	2.3	33	80	13	84	22	6	8	62	1.46
62199644--62199681	20	1.9	19	94	5	67	47	0	10	42	1.38
62200146--62200179	17	2.0	17	88	0	50	64	0	0	35	0.94
62202584--62202622	18	2.3	17	83	12	53	33	2	5	58	1.33
62210006--62210043	18	2.1	18	85	9	51	44	0	0	55	0.99
62211737--62212361	311	2.0	312	99	0	1243	31	18	9	39	1.84
62213362--62213603	119	2.0	119	95	0	430	30	14	15	39	1.87
62223883--62223947	29	2.2	29	86	0	85	24	1	7	66	1.27
62224801--62224831	16	1.9	16	93	0	53	54	0	0	45	0.99
62232332--62232374	15	2.9	14	76	10	50	69	11	0	18	1.17
62249849--62249900	18	2.9	17	72	25	52	40	0	0	59	0.97
62249849--62249905	19	3.1	19	78	9	64	40	0	0	59	0.97
62256929--62257175	132	1.9	132	86	3	354	46	5	8	39	1.58
62260704--62260884	54	3.5	53	69	15	155	33	4	19	41	1.73
62260696--62260900	101	2.0	100	92	2	340	34	4	18	42	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62261168--62261222	26	2.2	26	90	6	87	41	7	14	36	1.74
62272621--62272658	20	1.9	20	94	0	67	60	0	31	7	1.25
62272624--62272658	10	3.5	10	88	0	52	62	0	28	8	1.24
62277527--62277567	17	2.3	19	80	16	52	31	4	2	60	1.30
62278158--62278194	3	12.3	3	100	0	74	35	0	0	64	0.94
62289803--62289868	34	1.9	35	81	9	82	53	1	4	40	1.31
62293349--62293413	32	2.0	32	93	0	112	52	9	12	26	1.68
62295848--62295916	24	2.9	24	81	10	72	73	0	17	8	1.07
62304679--62304750	24	3.0	24	91	6	110	16	25	20	37	1.93
62304690--62304760	24	2.9	24	85	6	72	18	23	18	39	1.92
62304745--62304908	74	2.2	74	97	0	310	23	23	18	33	1.97
62304747--62304882	25	5.5	25	75	1	130	22	23	19	34	1.96
62305105--62305190	42	2.0	42	95	0	154	22	17	17	43	1.88
62308243--62308294	16	3.3	15	78	10	50	28	21	3	46	1.69
62319204--62319250	16	3.0	15	82	11	67	61	0	2	36	1.08
62325609--62325637	11	2.6	11	100	0	58	51	0	0	48	1.00
62325794--62325821	11	2.5	11	100	0	56	50	0	0	50	1.00
62329030--62329090	29	2.1	29	84	3	77	39	1	40	18	1.60
62337479--62337560	30	2.8	30	77	1	94	23	20	23	32	1.98
62338662--62338758	43	2.3	43	89	3	142	30	28	16	23	1.96
62341400--62341669	41	6.6	41	94	1	434	27	26	18	28	1.98
62341892--62341949	30	1.9	30	92	0	98	24	27	3	44	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62345428--62345666	101	2.4	101	89	0	370	30	16	23	28	1.96
62347927--62347977	26	1.9	27	88	11	79	23	11	13	50	1.74
62357334--62357379	22	2.1	22	91	0	74	47	15	2	34	1.57
62361070--62361109	18	2.2	18	100	0	80	30	22	10	37	1.87
62362477--62362530	22	2.5	22	100	0	108	50	16	18	14	1.79
62378266--62378299	17	2.0	17	88	0	50	64	0	0	35	0.94
62379200--62379240	16	2.4	18	80	12	50	31	4	0	63	1.15
62379700--62380276	298	1.9	296	87	3	847	38	9	10	41	1.72
62382566--62382597	2	16.5	2	93	6	57	50	0	0	50	1.00
62388825--62388857	16	2.1	16	100	0	66	60	0	6	33	1.21

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210