genome.fa.s3.2.7.7.80.10.50.1000.142.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr8
Parameters: 2 7 7 80 10 50 1000
Length:  70076365

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   

This is table  142  of  210  ( 25174 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47195154--47195291	52	2.6	54	81	2	154	24	22	10	42	1.84
47197422--47197470	25	1.9	26	87	4	73	24	20	14	40	1.89
47201484--47201518	17	2.1	17	88	0	52	25	0	2	71	1.00
47209118--47209171	20	2.7	20	85	0	63	20	31	0	48	1.50
47223998--47224043	19	2.4	19	92	0	74	56	10	0	32	1.34
47226431--47226565	27	5.1	26	82	6	114	25	26	13	34	1.93
47226453--47226565	53	2.1	53	85	3	147	23	28	12	35	1.91
47227878--47228100	29	7.9	29	75	6	188	35	19	15	28	1.93
47227868--47228027	84	1.9	85	82	6	200	38	21	15	25	1.92
47227896--47228036	55	2.5	55	81	6	160	36	20	17	25	1.95
47227895--47228036	28	5.0	29	79	10	152	35	20	17	26	1.95
47237395--47237494	49	2.0	50	98	1	193	34	13	31	22	1.92
47237517--47237707	51	3.8	51	76	9	194	25	16	27	30	1.96
47237912--47237984	37	1.9	38	86	2	103	42	2	23	31	1.68
47242958--47243020	31	2.0	31	100	0	126	34	12	25	26	1.92
47243638--47243695	26	2.2	26	96	0	107	32	5	12	50	1.62
47244646--47244692	10	4.6	10	85	12	51	34	0	4	61	1.15
47244811--47244855	22	2.0	22	83	8	56	42	6	0	51	1.28
47250627--47250677	25	2.0	25	96	0	93	35	13	11	39	1.82
47250792--47252375	449	3.5	449	97	0	2981	27	25	12	34	1.92
47252036--47252715	339	2.0	340	99	0	1335	27	25	12	34	1.92
47252717--47253171	229	2.0	229	91	1	734	30	23	12	33	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47260513--47260560	24	2.0	24	95	0	87	37	27	12	22	1.90
47278371--47278414	11	4.0	11	84	0	52	27	4	40	27	1.75
47281814--47281852	18	2.2	18	86	9	53	25	15	15	43	1.86
47289303--47289330	12	2.3	12	100	0	56	14	7	14	64	1.48
47296390--47296437	25	1.9	25	100	0	96	41	16	20	20	1.90
47300592--47300658	30	2.2	30	84	5	82	26	19	4	49	1.67
47315323--47315351	11	2.6	11	100	0	58	34	20	6	37	1.80
47315974--47316400	44	9.9	43	71	12	241	31	21	21	25	1.98
47315975--47316302	84	3.8	87	74	13	226	30	21	21	26	1.98
47317715--47317770	17	3.6	16	78	11	71	21	1	0	76	0.87
47317720--47317769	15	3.3	15	75	8	57	22	2	0	76	0.89
47317709--47317770	29	2.1	30	90	3	99	19	3	0	77	0.90
47320378--47320420	22	2.0	21	86	4	59	18	2	27	51	1.59
47320514--47320561	21	2.3	21	85	0	60	14	2	35	47	1.56
47320501--47320573	28	2.6	28	76	8	85	19	2	31	46	1.64
47320697--47320726	15	2.0	15	93	0	51	63	0	3	33	1.11
47320933--47320970	20	1.9	20	94	0	67	34	0	7	57	1.28
47321486--47321529	19	2.2	20	88	4	63	27	43	2	27	1.67
47325351--47325469	37	3.4	37	67	27	112	48	8	5	37	1.55
47325343--47325448	32	3.2	32	64	25	83	47	6	5	40	1.53
47325339--47325477	69	2.0	70	98	1	271	46	8	5	39	1.59
47325454--47325789	9	39.8	9	64	20	129	45	18	3	31	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47325494--47325707	25	8.5	25	72	14	131	44	20	3	32	1.67
47325617--47325697	16	4.9	16	76	14	76	49	22	1	27	1.57
47325626--47325846	41	5.4	41	74	8	182	48	17	4	29	1.65
47325667--47325722	25	2.2	25	90	0	85	48	19	3	28	1.66
47325699--47325738	16	2.5	16	91	0	62	55	17	0	27	1.43
47325715--47325788	25	3.0	24	78	7	85	44	18	5	31	1.73
47325765--47325807	16	2.7	16	89	7	61	55	11	0	32	1.36
47325597--47325804	66	3.2	66	84	4	258	47	18	3	29	1.66
47325629--47325885	82	3.1	82	82	5	270	49	16	3	29	1.64
47325817--47325871	25	2.2	25	96	0	101	47	14	3	34	1.62
47325832--47325943	9	13.3	9	67	14	60	44	17	3	33	1.66
47325668--47325938	149	1.8	149	89	0	425	47	16	4	30	1.68
47325878--47325950	25	2.9	25	86	8	103	41	19	4	35	1.70
47329555--47329824	43	6.3	43	80	3	301	26	18	29	25	1.98
47329555--47329824	129	2.1	129	83	4	339	26	18	29	25	1.98
47329555--47329824	86	3.1	86	84	3	346	26	18	29	25	1.98
47331774--47332011	32	7.5	32	75	2	201	34	20	22	22	1.97
47332180--47332254	24	3.1	24	71	17	66	50	20	6	22	1.71
47332283--47332789	27	18.9	27	78	4	323	24	20	19	35	1.95
47332297--47332594	163	1.8	163	88	1	463	26	20	18	34	1.96
47332282--47332750	54	8.7	54	82	3	414	24	20	18	35	1.95
47332635--47332819	54	3.4	54	80	5	164	20	20	21	38	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47334908--47335055	29	5.4	29	68	16	104	50	4	0	44	1.22
47334896--47335050	76	2.0	77	98	1	303	52	5	0	42	1.23
47334983--47335055	29	2.5	29	88	2	119	50	4	0	45	1.20
47343659--47343695	11	3.2	12	81	18	51	0	27	0	72	0.84
47343653--47343703	23	2.3	22	79	3	57	7	25	0	66	1.18
47345230--47345533	151	2.0	152	99	0	601	47	7	9	35	1.65
47348523--47348616	46	2.0	47	95	2	172	44	9	6	39	1.63
47356819--47356855	14	2.6	14	95	0	65	24	0	5	70	1.08
47357973--47358012	9	4.6	9	87	6	55	70	0	2	27	1.01
47365634--47365673	20	2.0	20	100	0	80	20	20	10	50	1.76
47379408--47379564	43	3.7	43	79	12	164	24	17	25	31	1.97
47386660--47386735	10	7.5	10	74	11	66	77	0	21	1	0.84
47386658--47386737	15	5.4	14	73	18	72	78	0	20	1	0.81
47386658--47386735	21	3.9	20	80	11	88	78	0	20	1	0.83
47386658--47386737	29	2.7	29	75	21	85	78	0	20	1	0.81
47386659--47386736	36	2.2	36	81	4	95	78	0	20	1	0.83
47391294--47391331	19	2.0	19	94	0	67	63	2	10	23	1.39
47397015--47397091	25	3.3	24	69	23	65	35	2	15	46	1.60
47397063--47397433	34	11.9	33	71	16	178	31	2	19	45	1.66
47397030--47397202	68	2.5	68	77	9	197	31	2	18	47	1.63
47397101--47397433	120	2.8	120	97	0	621	31	3	19	45	1.65
47397350--47397613	25	10.9	25	69	17	141	30	2	21	45	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47397413--47397506	41	2.3	41	83	0	116	29	2	22	45	1.64
47397467--47397538	34	2.1	34	84	0	90	30	1	26	41	1.64
47397560--47397622	21	3.1	21	80	15	71	31	3	17	47	1.63
47397026--47397600	9	67.0	9	66	15	247	31	2	19	45	1.65
47397720--47397747	13	2.2	13	100	0	56	46	7	7	39	1.59
47397641--47397754	45	2.5	45	97	0	210	50	7	4	38	1.50
47397643--47397812	17	10.2	17	68	22	112	50	6	4	38	1.49
47398044--47398083	21	1.9	21	94	0	71	20	15	25	40	1.90
47414158--47414319	81	2.0	83	84	9	217	41	26	3	28	1.73
47414396--47414428	14	2.3	15	94	5	59	36	33	0	30	1.58
47414487--47414518	14	2.3	14	94	0	55	46	21	0	31	1.52
47414795--47414834	20	2.0	20	90	4	64	62	5	7	25	1.42
47417020--47417084	32	2.0	32	100	0	130	27	12	12	47	1.77
47420316--47420366	20	2.7	17	82	17	57	29	0	0	70	0.87
47422749--47422777	3	9.7	3	100	0	58	31	0	0	68	0.89
47431732--47431830	28	3.5	28	93	4	164	39	12	0	48	1.40
47431901--47431976	27	2.8	27	83	0	98	26	27	28	17	1.97
47432117--47432155	19	2.0	21	85	10	55	25	0	7	66	1.18
47432202--47432239	3	12.3	3	88	5	58	31	0	5	63	1.17
47432238--47432278	3	13.7	3	100	0	82	0	0	31	68	0.90
47437812--47437849	19	2.0	19	85	10	51	60	7	0	31	1.25
47437882--47437986	39	2.7	37	79	18	117	0	31	0	68	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47437873--47437977	23	4.8	23	72	20	75	0	32	0	67	0.91
47438019--47438085	27	2.5	27	92	0	107	16	26	28	28	1.97
47438035--47438094	27	2.2	27	78	0	66	18	28	25	28	1.98
47438162--47438259	28	3.5	28	86	6	137	46	0	12	40	1.41
47438623--47438655	13	2.3	15	90	10	52	30	0	12	57	1.35
47442481--47442645	50	3.3	50	83	0	195	22	33	20	24	1.97
47452612--47452636	10	2.5	10	100	0	50	60	0	20	20	1.37
47459766--47459906	45	3.2	43	68	11	115	29	21	24	24	1.99
47459733--47459904	88	2.0	88	86	4	240	26	23	26	24	2.00
47460473--47460581	44	2.5	44	82	8	141	28	18	21	32	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210