genome.fa.s3.2.7.7.80.10.50.1000.144.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr8
Parameters: 2 7 7 80 10 50 1000
Length:  70076365

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   

This is table  144  of  210  ( 25174 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47785454--47785488	16	2.2	16	94	0	61	31	31	0	37	1.58
47786172--47786219	22	2.2	22	85	7	62	39	2	0	58	1.10
47787550--47787582	10	3.4	10	87	8	50	42	0	27	30	1.56
47790591--47790637	25	1.9	25	86	4	69	14	25	21	38	1.92
47790712--47790762	27	2.0	27	84	7	70	19	25	21	33	1.97
47790801--47790878	24	3.2	25	73	12	81	19	30	17	32	1.95
47793662--47793714	27	2.0	27	84	0	70	30	30	13	26	1.94
47793730--47793818	45	2.0	45	90	0	142	31	26	17	23	1.97
47795026--47795063	19	2.0	19	94	0	67	44	0	23	31	1.54
47795026--47795061	10	3.7	10	85	7	56	47	0	25	27	1.52
47800670--47800734	20	3.3	20	70	12	62	55	7	16	20	1.65
47800659--47800739	39	2.1	39	92	0	135	53	6	19	20	1.67
47801103--47801134	11	2.8	12	90	9	50	0	6	6	87	0.67
47801362--47801408	15	3.1	15	93	0	76	34	8	0	57	1.29
47801368--47801414	3	15.7	3	95	0	76	34	4	0	61	1.15
47801605--47801656	26	2.0	27	88	3	79	32	1	3	61	1.25
47808429--47809224	132	6.0	132	98	0	1466	28	16	23	31	1.96
47809617--47809681	20	3.3	20	70	12	62	55	7	16	20	1.65
47809606--47809686	39	2.1	39	92	0	135	53	6	19	20	1.67
47813302--47813371	31	2.1	34	82	12	85	18	32	15	32	1.93
47815121--47815151	6	5.2	6	100	0	62	83	0	16	0	0.64
47821529--47821792	79	3.3	79	98	0	519	40	12	14	32	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47828677--47828750	19	3.5	21	75	13	62	33	8	17	40	1.79
47828692--47828750	23	2.6	23	79	10	59	33	6	18	40	1.77
47831659--47831697	20	2.0	20	94	0	69	30	10	30	28	1.90
47831638--47831832	66	2.9	66	86	0	282	32	14	22	31	1.93
47831796--47831873	22	3.6	22	79	6	72	29	12	24	33	1.92
47836308--47836380	37	2.0	37	97	0	137	19	9	12	58	1.60
47836318--47836381	18	3.5	18	68	4	56	21	9	9	59	1.57
47836369--47836397	15	1.9	15	100	0	58	34	3	6	55	1.44
47836532--47836586	27	2.0	27	92	0	92	32	25	10	30	1.90
47844979--47845126	44	3.4	43	73	9	120	28	19	17	34	1.95
47845133--47845226	44	2.1	44	84	2	116	29	21	11	37	1.89
47845464--47845646	44	4.2	44	73	12	160	27	22	19	30	1.98
47845478--47845687	44	4.8	44	77	5	158	26	21	19	31	1.97
47845486--47845687	87	2.3	89	84	4	257	26	21	20	31	1.98
47845486--47845741	87	2.9	86	80	7	248	27	19	19	33	1.96
47847561--47847595	17	2.1	17	88	0	52	40	2	0	57	1.14
47847570--47847609	14	2.7	15	84	7	55	35	10	0	55	1.34
47860280--47860667	44	8.8	44	91	0	623	26	22	24	25	2.00
47861959--47861993	17	2.1	17	88	0	52	40	2	0	57	1.14
47861968--47862007	14	2.7	15	84	7	55	35	10	0	55	1.34
47864782--47864975	45	4.3	45	90	1	282	41	20	19	18	1.91
47867703--47867748	21	2.2	21	84	0	56	36	34	4	23	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47878218--47878334	39	3.0	39	92	0	198	46	21	3	29	1.68
47879879--47879918	20	2.0	20	95	4	73	35	17	5	42	1.71
47879895--47879946	27	1.9	27	96	0	95	40	13	3	42	1.62
47880526--47880569	23	1.9	23	85	0	61	34	2	4	59	1.30
47880903--47880928	12	2.2	12	100	0	52	30	0	19	50	1.48
47881820--47881864	2	22.5	2	90	0	72	48	2	0	48	1.13
47888449--47888483	17	2.0	18	88	5	54	20	2	0	77	0.90
47895021--47895064	23	1.9	22	82	17	54	36	25	0	38	1.56
47895110--47895197	45	2.0	45	90	0	140	32	20	18	28	1.96
47895208--47895394	51	3.7	49	77	7	196	31	26	17	24	1.97
47895206--47895390	101	1.8	101	88	5	284	31	26	17	24	1.97
47905865--47905951	28	3.1	27	75	6	93	35	21	22	19	1.96
47906307--47906695	27	14.5	26	80	5	357	25	20	18	35	1.95
47906324--47906695	54	6.9	54	83	2	401	25	19	19	35	1.95
47906307--47906680	81	4.6	81	80	3	414	25	19	18	35	1.95
47906339--47906695	134	2.7	134	84	2	457	25	20	18	35	1.95
47906308--47906695	188	2.1	188	83	2	485	25	20	18	36	1.95
47908997--47909238	37	6.6	37	78	7	201	42	28	9	20	1.83
47909009--47909078	18	3.8	19	71	14	58	38	30	10	21	1.86
47909015--47909234	74	3.0	75	79	9	222	42	27	9	20	1.82
47911648--47911724	26	2.9	26	78	3	82	31	19	5	44	1.73
47911870--47911894	12	2.1	12	100	0	50	16	24	0	60	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47912475--47912523	16	3.1	16	77	11	64	42	22	20	14	1.88
47925244--47925738	51	9.7	52	77	6	487	29	26	14	28	1.95
47925244--47925738	102	4.9	102	92	1	735	29	26	14	28	1.95
47932008--47932055	19	2.5	19	100	0	96	20	43	0	35	1.52
47932069--47932106	8	4.8	8	100	0	76	13	36	0	50	1.42
47945146--47945266	29	4.2	29	92	0	206	36	14	25	23	1.93
47948259--47948308	23	2.1	23	85	3	64	44	16	20	20	1.87
47952121--47952156	15	2.5	14	86	8	54	55	0	5	38	1.23
47958422--47958470	21	2.3	20	89	6	71	59	0	4	36	1.17
47958420--47958483	31	2.1	31	82	11	78	59	1	3	35	1.23
47960125--47960155	9	3.4	9	90	0	53	25	12	22	38	1.90
47965621--47965664	23	1.9	23	95	0	79	29	11	22	36	1.89
47966809--47966836	12	2.3	12	100	0	56	0	14	0	85	0.59
47966809--47966842	15	2.3	15	85	14	52	0	11	0	88	0.52
47967342--47967393	5	10.8	5	85	6	72	23	1	34	40	1.66
47973364--47973514	9	16.6	9	70	22	77	33	1	3	61	1.20
47973359--47973425	16	3.7	18	76	13	66	31	1	1	65	1.10
47973559--47973630	31	2.4	29	83	4	90	25	12	13	48	1.78
47973757--47973800	13	3.4	12	81	12	52	13	9	0	77	0.99
47975726--47975764	16	2.4	16	82	0	51	74	7	15	2	1.15
47976247--47976285	20	2.0	20	100	0	78	10	41	17	30	1.83
47976269--47977008	394	1.9	394	95	0	1356	26	22	19	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47980598--47980636	16	2.4	16	82	0	51	74	7	15	2	1.15
47983671--47983822	75	2.0	76	98	1	297	38	16	2	42	1.62
47992189--47992216	13	2.2	13	100	0	56	64	0	0	35	0.94
47993141--47993193	19	2.7	21	80	14	67	33	0	7	58	1.26
47993866--47993896	14	2.2	14	94	0	53	48	6	3	41	1.45
47997409--47997450	22	1.9	22	85	0	57	52	2	19	26	1.58
47998295--47998754	255	1.8	256	99	0	913	35	10	13	41	1.78
48005234--48005294	24	2.6	23	72	12	61	40	8	22	27	1.82
48011005--48011059	28	1.9	29	85	3	76	36	10	5	47	1.62
48021077--48021264	68	2.8	68	86	0	250	35	16	23	23	1.95
48029498--48029578	6	13.3	6	77	10	76	76	13	7	2	1.10
48034511--48034626	37	3.1	37	84	7	146	18	15	31	35	1.92
48064711--48064751	21	2.0	21	81	18	50	12	12	14	60	1.58
48071835--48071954	24	4.8	25	74	11	104	16	24	24	35	1.95
48071914--48071963	24	2.1	24	88	0	73	16	26	22	36	1.94
48074022--48074046	2	12.5	2	100	0	50	52	0	0	48	1.00
48080344--48080382	19	2.1	19	100	0	78	74	0	10	15	1.07
48082321--48082362	16	2.5	17	84	7	59	47	0	11	40	1.40
48091533--48091605	20	3.7	20	74	15	64	10	30	17	41	1.84
48091527--48091605	40	2.0	39	85	11	108	11	31	16	40	1.84
48095420--48095627	25	8.3	25	75	10	156	35	21	18	25	1.95
48095404--48095613	50	4.2	50	75	10	187	36	23	18	21	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48095444--48095628	75	2.5	75	81	3	212	35	21	17	25	1.95
48098636--48098666	16	1.9	16	93	0	53	38	0	0	61	0.96
48103261--48103322	22	2.7	22	87	5	79	48	0	1	50	1.10
48103296--48103337	16	2.6	16	96	0	75	47	0	7	45	1.30
48103267--48103322	23	2.5	23	85	2	78	51	0	1	46	1.11
48103326--48103468	68	2.1	67	93	2	252	41	4	9	44	1.57
48103410--48103437	9	3.1	9	100	0	56	32	0	10	57	1.33
48103533--48103576	22	1.9	24	86	9	65	59	4	0	36	1.18
48108922--48109204	27	10.6	27	84	5	333	18	17	21	42	1.89
48108922--48109204	81	3.5	80	86	4	383	18	17	21	42	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210