genome.fa.s3.2.7.7.80.10.50.1000.32.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr8
Parameters: 2 7 7 80 10 50 1000
Length:  70076365

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   

This is table  32  of  210  ( 25174 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11368335--11368401	27	2.5	27	92	0	107	14	28	29	26	1.96
11368335--11368410	27	2.8	27	84	4	100	15	27	28	27	1.96
11368471--11368546	28	2.7	28	87	2	107	46	1	10	42	1.46
11374306--11374383	38	2.0	38	85	5	102	43	11	8	35	1.72
11377539--11377586	22	2.2	21	82	10	60	31	31	0	37	1.58
11377551--11377596	22	2.1	22	100	0	92	30	30	0	39	1.57
11377568--11377626	30	2.0	30	93	0	100	30	35	0	33	1.58
11377598--11377639	22	1.9	22	95	0	75	30	35	0	33	1.58
11377654--11377687	17	1.9	18	88	5	52	23	11	0	64	1.26
11377682--11377747	31	2.2	30	91	2	105	36	0	1	62	1.05
11377682--11377747	20	3.2	20	75	14	64	36	0	1	62	1.05
11380438--11380530	29	3.0	30	90	6	134	43	27	1	27	1.62
11384259--11384573	123	2.5	124	94	1	569	35	20	13	30	1.91
11389677--11389701	7	3.6	7	100	0	50	12	0	0	88	0.53
11394703--11394874	45	4.0	44	74	15	137	29	27	18	25	1.98
11396991--11397119	64	2.0	64	90	0	204	18	19	27	34	1.95
11400148--11400291	10	13.6	10	71	15	76	69	0	29	0	0.94
11400149--11400257	34	3.2	35	80	8	118	68	0	30	0	0.96
11400132--11400254	41	3.2	40	80	13	150	66	0	31	1	1.01
11400183--11400292	51	2.1	52	86	9	154	70	0	29	0	0.94
11400139--11400317	79	2.3	79	79	11	188	68	0	30	1	1.01
11400233--11400318	13	7.0	13	72	18	53	67	1	31	0	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11400671--11401223	157	3.5	158	75	13	553	51	6	10	31	1.62
11401375--11401519	10	14.3	10	73	17	72	68	0	31	0	0.95
11401374--11401516	24	5.6	24	72	22	96	67	0	31	0	0.95
11401385--11401494	5	22.4	5	66	9	57	66	0	32	0	0.98
11401382--11401539	25	5.5	28	68	22	96	67	0	31	0	1.00
11401375--11401482	41	2.8	38	86	6	144	66	0	32	0	0.98
11401411--11401520	51	2.1	52	86	9	154	70	0	29	0	0.94
11401383--11401535	41	3.9	40	77	13	140	67	0	31	0	1.00
11401375--11401539	79	2.1	79	82	8	194	67	0	31	0	1.00
11401461--11401546	13	7.0	13	72	18	53	67	1	31	0	0.98
11402086--11402148	19	3.5	17	74	16	56	61	4	6	26	1.40
11407409--11407543	40	3.2	40	75	13	121	51	11	4	32	1.59
11407706--11407742	10	3.6	10	88	3	56	0	29	0	70	0.88
11417235--11417840	44	13.6	44	72	8	325	32	26	19	21	1.97
11417235--11417846	89	6.9	89	82	1	552	32	26	19	22	1.97
11417388--11417868	222	2.2	223	82	2	583	32	25	19	21	1.97
11417235--11417720	267	1.8	267	83	2	627	32	26	19	21	1.97
11417849--11417919	31	2.3	31	95	0	124	39	21	23	15	1.91
11419576--11419654	29	2.7	29	80	0	86	37	10	5	46	1.60
11419961--11419996	8	4.4	8	92	3	54	27	2	0	69	1.02
11421658--11421972	109	2.9	108	91	1	490	33	19	17	29	1.95
11422197--11422268	6	12.5	6	84	12	71	76	0	5	18	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11422235--11422264	15	2.0	15	100	0	60	80	0	0	20	0.72
11423829--11424328	99	5.0	98	87	2	653	25	21	23	30	1.99
11423880--11424259	50	7.7	50	67	7	211	24	22	23	28	1.99
11423948--11424308	49	7.3	49	69	5	233	25	22	22	30	1.99
11428642--11428666	12	2.1	12	100	0	50	8	20	16	56	1.65
11429067--11429272	106	1.9	106	100	0	412	34	16	11	36	1.86
11446342--11446589	109	2.3	108	89	2	372	34	16	16	31	1.92
11446770--11446807	6	6.3	6	84	9	51	81	0	2	15	0.80
11449990--11450716	362	2.0	363	94	0	1285	39	11	15	33	1.84
11451620--11451671	25	2.1	25	82	7	61	19	25	25	30	1.98
11457407--11457571	50	3.3	50	92	0	251	26	24	27	21	1.99
11460471--11460530	29	2.1	29	96	0	111	31	23	18	26	1.97
11468526--11468560	16	2.2	16	89	0	52	28	0	37	34	1.58
11468797--11468831	18	2.0	17	88	5	52	54	0	0	45	0.99
11468714--11468954	120	2.0	119	98	0	464	45	3	2	48	1.30
11468881--11468946	27	2.5	26	72	5	60	51	3	0	45	1.16
11478649--11478683	2	17.5	2	100	0	70	51	0	0	48	1.00
11486832--11486890	15	4.1	14	76	10	57	27	3	0	69	1.04
11486830--11486890	22	2.8	22	78	7	63	29	3	0	67	1.07
11486832--11486890	7	8.1	7	78	10	57	27	3	0	69	1.04
11486832--11486890	29	2.0	31	86	6	86	27	3	0	69	1.04
11488604--11488645	16	2.6	16	92	0	66	42	7	2	47	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11488619--11488679	22	2.8	22	84	0	77	47	1	1	49	1.21
11489853--11489877	2	12.5	2	100	0	50	52	0	0	48	1.00
11490053--11490077	2	12.5	2	100	0	50	52	0	0	48	1.00
11489738--11490131	200	2.0	200	99	0	779	37	10	9	42	1.73
11493873--11493917	19	2.3	20	75	20	51	26	22	8	42	1.83
11498160--11499515	132	10.3	132	88	3	1858	28	19	23	28	1.98
11498160--11499515	397	3.4	396	87	4	1934	28	19	23	28	1.98
11498160--11499515	529	2.6	527	90	3	2073	28	19	23	28	1.98
11499682--11499719	20	1.9	20	100	0	76	39	13	26	21	1.89
11500813--11500851	3	13.3	3	94	5	71	30	0	0	69	0.89
11510935--11510960	11	2.4	11	100	0	52	0	7	0	92	0.39
11516107--11516233	64	2.0	64	82	0	155	33	22	20	23	1.97
11516607--11516648	21	2.0	21	85	0	57	35	26	2	35	1.70
11516618--11516650	11	3.1	11	86	8	50	33	36	0	30	1.58
11523786--11523816	11	2.8	11	95	0	53	29	0	0	70	0.87
11530499--11530633	50	2.7	50	91	0	207	22	28	22	26	1.99
11535409--11535448	19	2.2	19	90	4	64	55	0	5	40	1.22
11537053--11537090	20	1.9	20	89	10	60	23	0	2	73	0.95
11539390--11539414	12	2.1	12	100	0	50	48	36	8	8	1.62
11539157--11539688	287	1.9	287	93	0	913	28	17	20	33	1.95
11544114--11544164	21	2.5	20	87	9	77	3	11	9	74	1.19
11544166--11544229	6	10.2	6	79	12	58	14	4	3	78	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11544156--11544229	28	2.7	27	82	12	87	13	5	2	78	1.03
11547455--11547594	21	6.8	21	71	6	97	19	22	16	42	1.89
11547455--11547502	20	2.3	20	85	3	60	22	16	16	43	1.87
11547476--11547594	42	2.9	41	83	5	143	19	22	15	42	1.89
11547489--11547623	42	3.2	41	84	3	146	17	22	17	42	1.89
11547467--11547617	21	7.3	21	70	5	74	19	22	16	41	1.90
11550862--11550929	33	2.1	33	88	0	100	36	8	22	32	1.85
11550974--11551038	29	2.2	30	86	2	87	47	7	12	32	1.69
11557127--11557166	20	2.0	20	90	0	62	27	10	12	50	1.72
11557113--11557178	35	1.9	34	87	6	98	30	9	13	46	1.74
11561142--11561175	17	1.9	18	88	5	52	35	26	0	38	1.57
11566717--11566766	18	2.9	18	80	19	63	24	8	0	68	1.16
11570234--11570285	24	2.2	24	89	0	77	55	9	1	32	1.43
11571479--11571580	46	2.2	45	81	10	118	52	13	17	15	1.74
11581962--11581995	17	1.9	18	94	5	61	11	11	2	73	1.20
11582280--11582318	19	2.1	19	85	9	53	58	7	0	33	1.26
11595758--11595810	22	2.3	23	83	9	72	45	13	11	30	1.78
11596460--11596490	15	2.1	15	93	0	53	83	9	0	6	0.79
11597159--11597284	9	14.4	9	82	9	154	42	25	9	23	1.84
11597159--11597284	27	4.8	27	83	7	170	42	25	9	23	1.84
11598155--11598268	31	3.8	31	70	17	96	24	18	9	47	1.78
11606572--11606617	22	2.1	22	95	0	83	23	21	8	45	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11617013--11617084	21	3.4	21	86	0	99	34	27	8	29	1.86
11618236--11618274	20	2.0	20	84	0	51	38	33	2	25	1.70
11620101--11620136	17	2.1	17	89	0	54	52	2	2	41	1.30
11620229--11620279	18	2.9	17	70	18	50	52	9	0	37	1.34
11623309--11623339	3	10.7	3	93	6	55	70	0	29	0	0.87
11628612--11628645	15	2.1	17	89	10	54	38	0	2	58	1.13
11630524--11630754	84	2.7	81	79	7	228	27	13	7	51	1.69
11634245--11634333	42	2.1	42	85	4	117	14	23	19	42	1.88
11636680--11636974	147	2.0	148	99	0	583	41	6	6	45	1.55
11659470--11659522	21	2.5	21	81	0	61	28	3	33	33	1.75

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210