genome.fa.s3.2.7.7.80.10.50.1000.66.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr8
Parameters: 2 7 7 80 10 50 1000
Length:  70076365

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   

This is table  66  of  210  ( 25174 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23331030--23331220	33	5.8	33	76	4	170	19	43	11	25	1.84
23331379--23331540	73	2.2	73	90	3	245	25	7	16	51	1.70
23334617--23334652	18	1.9	19	94	5	65	2	25	5	66	1.27
23334884--23334926	19	2.2	20	88	12	63	72	0	0	27	0.85
23335266--23335329	28	2.3	27	76	7	65	25	6	3	65	1.31
23339062--23339920	44	19.3	44	65	8	367	20	23	27	28	1.99
23338986--23339932	89	10.6	89	88	0	1311	20	23	26	29	1.99
23341743--23341802	13	4.9	12	75	15	52	1	5	13	80	0.96
23346861--23347549	357	1.9	356	97	0	1306	53	7	11	27	1.62
23348706--23348744	12	3.3	12	86	13	55	41	0	0	58	0.98
23348675--23348743	11	6.4	11	85	6	79	49	0	1	49	1.09
23353758--23353788	16	2.0	16	93	6	55	16	0	12	70	1.16
23356172--23356197	10	2.6	10	100	0	52	76	0	7	15	0.99
23357048--23357102	18	2.9	19	73	13	60	61	1	21	14	1.42
23361167--23361357	51	3.8	50	74	11	183	30	25	18	24	1.98
23361157--23361349	102	1.9	102	86	5	239	30	24	19	24	1.98
23365139--23365295	41	3.8	41	78	7	149	24	14	27	34	1.93
23377453--23377583	27	4.9	27	84	0	163	45	19	15	19	1.86
23377935--23378025	28	3.4	27	82	7	114	21	26	23	28	1.99
23377990--23378059	32	2.1	34	81	5	81	21	25	27	25	1.99
23378837--23378869	17	2.0	16	94	5	57	36	12	33	18	1.88
23385299--23385396	23	4.3	23	89	5	162	32	26	20	20	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23387214--23387318	27	3.9	27	88	0	129	40	22	18	19	1.92
23387207--23387320	54	2.1	54	83	0	147	41	21	18	19	1.91
23387511--23387565	26	2.1	26	82	0	65	23	21	20	34	1.97
23387668--23387759	28	3.4	28	81	3	107	23	23	22	29	1.99
23409310--23409394	41	2.1	41	97	0	161	37	9	15	37	1.80
23414477--23414529	25	2.1	25	82	0	61	22	22	16	37	1.94
23414491--23414553	25	2.5	25	84	0	72	20	25	20	33	1.97
23423341--23423371	2	15.5	2	100	0	62	0	0	48	51	1.00
23424802--23424826	5	5.0	5	100	0	50	60	0	0	40	0.97
23424929--23425073	45	3.2	45	81	8	152	42	17	17	22	1.89
23428175--23428204	15	2.0	15	93	0	51	56	0	6	36	1.26
23431658--23431686	7	4.3	7	95	4	51	86	0	0	13	0.58
23431775--23431845	1	71.0	1	100	0	142	0	0	0	100	0.00
23440218--23440285	33	2.1	33	100	0	136	26	14	25	33	1.94
23442835--23443047	93	2.3	93	89	1	329	16	23	14	45	1.84
23451665--23452329	69	9.6	69	81	1	548	34	21	19	23	1.97
23456326--23456360	3	11.7	3	93	0	52	0	28	0	71	0.86
23456741--23456786	24	2.0	24	91	4	76	34	2	8	54	1.43
23457024--23457054	9	3.4	9	90	0	53	25	12	22	38	1.90
23457108--23457144	9	4.1	9	92	0	65	45	13	10	29	1.77
23462871--23462947	40	2.0	39	92	5	129	61	10	5	23	1.49
23464554--23464586	14	2.4	14	94	0	57	39	6	21	33	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23464958--23465059	46	2.2	46	91	0	159	41	18	8	31	1.81
23465158--23465194	19	1.9	19	88	0	56	43	21	5	29	1.75
23466143--23466203	32	1.9	32	93	6	106	49	19	3	27	1.64
23466141--23466215	32	2.5	29	82	16	98	49	20	2	28	1.62
23466195--23466237	21	2.0	21	86	8	61	53	16	0	30	1.43
23467623--23467649	4	6.8	4	100	0	54	74	25	0	0	0.83
23475290--23475362	23	3.5	23	68	31	65	30	4	20	45	1.70
23475290--23475395	22	5.3	22	65	32	76	29	3	20	46	1.68
23475287--23475423	39	3.5	39	90	0	211	30	3	20	45	1.68
23487023--23487120	42	2.3	42	89	0	142	26	27	20	25	1.99
23488980--23489096	23	5.1	23	86	4	173	34	25	21	18	1.96
23512190--23512259	23	3.0	23	80	2	77	31	11	17	40	1.85
23535560--23535679	60	2.0	60	100	0	240	33	16	16	33	1.92
23538870--23539054	46	4.0	46	87	1	264	29	25	9	35	1.87
23540261--23540308	17	2.9	17	87	3	62	54	16	2	27	1.54
23547316--23547484	43	3.9	42	78	8	169	31	25	14	27	1.95
23547322--23547535	44	4.8	44	76	10	177	31	23	15	28	1.95
23554277--23554313	18	2.1	18	89	0	56	51	18	0	29	1.47
23555468--23555658	51	3.8	50	81	8	235	30	25	14	28	1.95
23563130--23563314	50	3.7	49	84	6	246	30	24	16	29	1.96
23563227--23563309	26	3.2	26	67	21	75	32	24	12	31	1.91
23563133--23563314	101	1.8	100	89	3	285	30	24	15	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23567112--23567210	42	2.4	42	82	3	128	21	32	22	24	1.98
23567786--23567883	38	2.6	37	85	3	124	33	27	21	17	1.96
23567856--23567891	16	2.2	16	95	0	63	30	27	27	13	1.94
23574761--23574802	22	1.9	22	85	0	57	30	4	0	64	1.14
23577669--23577734	33	1.9	35	84	9	91	65	12	9	13	1.48
23580960--23580999	12	3.3	12	85	0	62	72	7	7	12	1.27
23581051--23581112	28	2.5	23	75	24	72	30	9	38	20	1.85
23581059--23581114	28	2.0	28	100	0	112	32	10	35	21	1.88
23582692--23582763	10	6.9	10	75	20	67	76	0	4	19	0.95
23582691--23582757	15	4.5	15	77	22	79	76	0	2	20	0.92
23587836--23587925	38	2.4	38	83	3	101	35	42	10	12	1.76
23595459--23595494	12	3.0	13	84	15	51	58	8	16	16	1.61
23598943--23598990	18	2.7	17	83	6	51	29	16	6	47	1.71
23605176--23605212	9	4.1	9	85	0	56	43	13	13	29	1.82
23605427--23605486	30	2.0	31	86	3	86	20	40	0	40	1.52
23607608--23607641	17	2.0	17	88	11	52	50	0	5	44	1.26
23611619--23611650	8	4.0	8	100	0	64	50	12	12	25	1.75
23612761--23612804	20	2.2	20	83	4	52	18	13	6	61	1.54
23613970--23614174	90	2.3	91	83	6	249	40	22	6	30	1.80
23614220--23614269	19	2.8	18	75	19	59	62	0	2	36	1.07
23616368--23616403	17	2.1	17	89	0	54	8	19	8	63	1.47
23616384--23616423	20	2.0	21	85	5	55	10	25	7	57	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23617085--23617125	17	2.4	17	87	0	55	21	2	2	73	1.07
23631850--23634332	618	4.0	618	90	5	3187	35	14	19	30	1.92
23632648--23634537	625	3.0	631	94	2	3238	33	15	20	30	1.94
23635124--23635168	18	2.6	18	86	10	58	42	6	15	35	1.73
23635352--23635382	14	2.2	14	94	0	53	58	0	9	32	1.31
23636212--23636252	21	2.0	20	90	4	64	46	2	0	51	1.14
23639346--23639375	15	1.9	16	93	6	53	40	0	0	60	0.97
23651666--23651713	17	2.8	17	77	3	51	75	0	10	14	1.06
23651667--23651731	27	2.4	27	82	10	71	75	3	9	12	1.15
23657387--23657413	14	1.9	14	100	0	54	29	7	14	48	1.71
23668141--23668893	254	3.0	255	96	0	1395	28	18	9	43	1.82
23670009--23670353	27	12.8	28	82	5	207	28	25	13	32	1.94
23670009--23670352	54	6.4	54	79	5	347	28	25	13	32	1.94
23670032--23670353	81	4.0	81	86	2	407	28	24	13	33	1.93
23673503--23673533	16	1.9	16	93	0	53	48	0	22	29	1.51
23674983--23675014	13	2.3	15	89	10	50	25	21	31	21	1.98
23676673--23676938	37	7.2	37	80	1	282	27	17	19	35	1.94
23676671--23676939	74	3.6	73	87	2	367	27	17	19	35	1.94
23676669--23676938	111	2.4	111	82	1	353	27	17	19	35	1.94
23677036--23677140	14	7.5	14	75	0	102	33	18	14	34	1.91
23677036--23677141	28	3.8	28	79	2	115	33	18	14	33	1.91
23677037--23677200	70	2.3	70	80	2	177	33	18	12	35	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23678026--23678083	17	3.4	18	81	13	70	55	24	0	20	1.44
23679322--23679362	18	2.2	19	86	8	57	43	0	4	51	1.23
23679949--23679987	19	2.1	19	100	0	78	43	10	5	41	1.61
23692402--23692454	25	2.1	25	83	13	65	56	3	3	35	1.35
23699893--23699929	18	2.0	19	89	5	58	51	0	43	5	1.24
23702788--23702817	16	1.9	16	93	6	53	80	0	0	20	0.72
23704337--23704383	11	4.3	11	81	7	51	59	2	2	36	1.21
23707482--23707508	11	2.5	11	100	0	54	62	0	0	37	0.95
23711909--23711945	18	2.0	19	89	5	58	5	43	0	51	1.24
23715270--23715385	58	2.0	58	100	0	232	31	17	15	36	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210