genome.fa.s3.2.7.7.80.10.50.1000.130.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr8
Parameters: 2 7 7 80 10 50 1000
Length:  70076365

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   

This is table  130  of  210  ( 25174 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43318235--43318293	21	2.9	21	82	5	68	44	16	23	15	1.86
43318440--43318517	39	2.0	39	97	0	147	48	19	2	29	1.62
43322139--43322255	44	2.6	44	84	1	153	22	18	11	47	1.80
43324240--43324369	43	3.0	43	72	14	115	20	19	28	31	1.97
43328286--43328351	29	2.3	29	81	0	78	9	27	31	31	1.88
43344912--43344944	17	1.9	17	93	0	57	42	9	27	21	1.83
43364699--43364786	24	3.7	24	76	1	97	7	21	25	45	1.79
43364684--43364804	24	5.4	23	74	11	65	9	20	23	46	1.80
43373799--43373839	19	2.1	20	86	4	57	31	9	2	56	1.45
43374246--43374311	27	2.4	28	80	14	84	3	19	4	72	1.15
43374321--43374408	43	2.1	40	81	10	97	46	3	2	47	1.31
43376559--43376627	3	23.0	3	100	0	138	33	0	0	66	0.92
43381695--43381725	5	6.2	5	100	0	62	38	19	19	22	1.93
43382335--43382395	30	2.0	30	87	3	86	37	0	42	19	1.52
43385874--43385953	39	2.1	39	92	0	133	27	6	32	33	1.82
43385913--43386238	180	1.8	177	87	3	483	31	12	27	28	1.93
43390110--43390172	27	2.3	28	91	2	101	41	11	0	47	1.39
43390242--43390312	27	2.6	27	90	0	106	28	23	30	16	1.97
43390409--43390471	27	2.3	28	91	2	101	41	11	0	47	1.39
43390541--43390611	27	2.6	27	90	0	106	28	23	30	16	1.97
43390078--43390676	299	2.0	300	99	0	1191	43	14	19	23	1.87
43390657--43390716	4	15.0	4	80	13	61	68	0	31	0	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43390692--43390839	10	14.6	10	67	14	54	68	0	29	1	0.97
43390656--43390730	4	16.6	5	78	10	58	65	0	34	0	0.93
43390656--43390723	18	3.9	17	77	11	75	66	0	33	0	0.92
43390748--43390841	3	33.0	3	71	19	60	69	0	30	0	0.89
43390656--43390866	36	5.6	36	73	18	153	67	0	31	0	0.97
43390660--43390841	82	2.3	79	79	15	194	67	0	31	1	0.98
43390748--43390860	26	4.2	25	72	16	68	68	0	31	0	0.90
43390792--43390870	29	2.6	29	80	10	77	72	0	27	0	0.85
43391396--43391425	16	1.9	15	93	6	51	70	0	3	26	1.03
43395285--43395332	13	3.7	13	94	0	78	41	25	8	25	1.83
43397933--43397959	11	2.5	11	100	0	54	37	7	14	40	1.74
43401268--43401343	27	2.8	27	80	4	82	18	32	23	25	1.97
43401403--43401461	25	2.3	25	85	2	82	49	1	10	38	1.47
43402424--43402499	27	2.8	27	80	4	82	18	32	23	25	1.97
43402559--43402617	25	2.3	25	85	2	82	49	1	10	38	1.47
43409158--43409187	12	2.4	13	94	5	53	90	6	3	0	0.56
43410747--43411373	209	3.0	209	92	0	1011	32	13	20	33	1.91
43420513--43420578	24	2.8	24	92	0	105	31	19	33	15	1.93
43422509--43422578	36	1.9	36	100	0	140	31	12	17	38	1.87
43424237--43424306	34	2.1	34	97	0	131	28	24	22	24	1.99
43426405--43426443	17	2.3	18	82	13	55	56	12	0	30	1.37
43426875--43426900	12	2.2	12	100	0	52	76	15	7	0	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43427481--43427597	50	2.4	50	87	5	159	34	16	25	23	1.95
43427554--43427788	116	2.0	114	83	3	290	31	15	21	31	1.94
43430860--43430915	21	2.6	21	78	10	60	66	1	12	19	1.33
43430875--43431022	27	5.9	26	67	24	68	62	1	14	22	1.39
43430916--43431003	20	4.0	21	72	23	74	62	1	13	22	1.37
43430857--43430996	74	1.9	72	94	2	244	62	1	13	22	1.38
43430916--43431028	48	2.3	50	89	5	171	61	0	15	23	1.39
43430900--43431004	26	4.5	22	75	18	79	62	0	13	22	1.36
43431015--43431076	5	11.6	5	89	6	70	58	0	24	17	1.39
43431016--43431076	27	2.3	27	85	5	88	57	0	24	18	1.40
43431484--43431522	19	2.1	19	90	0	60	48	0	23	28	1.51
43431546--43431643	18	5.1	18	75	18	90	63	1	11	24	1.34
43431630--43431710	5	15.6	5	83	7	92	61	1	18	18	1.41
43431630--43431710	27	3.1	25	81	11	92	61	1	18	18	1.41
43431636--43431722	27	3.5	24	77	14	88	64	1	18	16	1.36
43431908--43431950	20	2.0	20	86	8	59	65	0	6	27	1.18
43432086--43432124	18	2.1	18	90	9	60	71	0	5	23	1.05
43432117--43432213	5	17.2	5	75	17	68	51	0	18	29	1.46
43432138--43432213	28	2.7	28	89	4	109	50	0	19	30	1.48
43432194--43432232	19	2.1	19	85	0	51	48	2	23	25	1.63
43432236--43432334	19	4.5	22	70	22	75	60	1	9	29	1.34
43432236--43432334	46	2.3	42	81	10	110	60	1	9	29	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43432267--43432339	24	3.0	24	75	13	60	61	1	12	24	1.39
43432327--43432384	5	10.8	5	82	10	62	55	1	22	20	1.53
43432327--43432384	22	2.7	22	89	2	82	55	1	22	20	1.53
43432327--43432384	17	3.6	16	84	9	64	55	1	22	20	1.53
43432681--43432773	49	1.9	48	82	10	118	25	20	18	35	1.95
43433100--43433163	30	2.2	30	82	2	76	23	10	14	51	1.73
43433409--43433523	51	2.3	51	92	0	194	27	29	0	42	1.56
43433446--43433527	22	3.4	22	67	20	56	29	24	0	46	1.53
43433525--43433589	31	2.1	32	94	5	116	35	0	0	64	0.94
43433898--43434094	99	2.0	99	96	0	367	25	23	27	22	2.00
43434768--43434792	7	3.6	7	100	0	50	28	0	12	60	1.32
43437104--43437165	25	2.3	27	78	16	74	40	3	11	45	1.56
43437884--43438066	55	3.3	55	96	0	339	39	11	4	44	1.62
43441154--43441493	123	2.8	123	90	1	551	32	21	15	30	1.94
43445327--43445569	120	2.0	122	97	1	463	43	11	10	34	1.75
43448108--43448278	85	2.0	85	97	0	324	33	14	12	39	1.84
43448325--43448597	133	2.0	134	98	0	530	42	5	9	43	1.58
43455004--43455139	54	2.5	54	91	0	227	26	22	28	22	1.99
43455692--43455728	17	2.2	17	100	0	74	29	16	24	29	1.96
43456807--43456858	27	1.9	27	92	0	86	23	25	26	25	2.00
43456806--43456879	27	2.8	26	81	6	85	25	28	21	24	1.99
43464443--43464469	8	3.4	8	100	0	54	88	0	0	11	0.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43465871--43465919	22	2.2	23	88	3	73	48	2	2	46	1.25
43465868--43465925	22	2.9	21	73	16	61	46	3	3	46	1.36
43465974--43466038	19	3.5	19	75	12	80	40	1	10	47	1.48
43466118--43466149	12	2.7	12	100	0	64	21	0	40	37	1.54
43466173--43466265	27	3.2	27	80	16	114	20	2	35	41	1.64
43466185--43466578	33	11.6	33	72	19	269	21	1	34	43	1.60
43466173--43466564	60	6.4	60	70	25	286	21	0	33	43	1.58
43466290--43466404	27	4.0	27	87	6	149	24	0	33	42	1.55
43466433--43466465	15	2.2	15	94	0	57	27	0	27	45	1.54
43466487--43466638	6	24.0	6	67	18	69	19	0	39	40	1.56
43467178--43467221	18	2.4	18	88	0	61	45	9	27	18	1.79
43469032--43469118	11	8.3	11	65	19	51	43	2	29	24	1.66
43469008--43469107	51	2.0	51	88	4	148	45	2	27	26	1.65
43469069--43469118	22	2.3	22	89	6	75	42	2	32	24	1.66
43470485--43470516	16	2.0	16	100	0	64	31	12	0	56	1.37
43474005--43474029	7	3.6	7	100	0	50	28	0	0	72	0.86
43475238--43475274	18	2.1	18	94	0	65	59	5	13	21	1.54
43478275--43478356	41	2.0	41	83	4	103	48	12	7	31	1.68
43478394--43478434	19	2.2	19	95	0	73	41	14	4	39	1.67
43489778--43489858	39	2.1	39	92	0	135	27	25	37	9	1.88
43494232--43494293	28	2.2	28	97	0	115	16	3	16	64	1.42
43502814--43502936	28	4.4	28	95	0	210	49	17	12	20	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43503832--43503868	19	2.0	19	89	5	58	56	8	5	29	1.51
43503886--43503914	7	4.3	7	91	8	51	13	13	0	72	1.13
43503886--43503914	13	2.1	14	93	6	51	13	13	0	72	1.13
43503894--43504023	57	2.3	56	84	10	158	26	18	6	48	1.73
43508010--43508035	2	13.0	2	100	0	52	50	0	0	50	1.00
43511529--43511596	30	2.3	30	84	0	82	27	22	16	33	1.95
43517452--43517690	50	4.6	50	84	3	289	21	30	22	25	1.99
43518297--43518461	49	3.4	49	77	8	149	29	16	23	30	1.96
43522405--43522515	28	4.0	28	79	2	125	29	16	17	36	1.91
43523072--43523142	34	2.1	34	94	5	126	33	19	5	40	1.75

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210