genome.fa.s3.2.7.7.80.10.50.1000.194.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr8
Parameters: 2 7 7 80 10 50 1000
Length:  70076365

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   

This is table  194  of  210  ( 25174 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64315203--64315278	29	2.6	29	82	4	89	48	14	13	23	1.79
64320595--64320644	22	2.3	22	80	13	59	22	24	2	52	1.58
64361230--64361300	19	3.8	18	76	9	61	29	2	4	63	1.27
64361166--64361263	46	2.1	48	83	7	121	31	7	4	57	1.45
64361418--64361628	92	2.3	92	85	4	266	36	7	18	37	1.79
64361419--64361628	91	2.3	92	83	4	264	36	7	19	37	1.79
64374115--64374169	19	2.7	20	83	11	67	70	1	3	23	1.12
64374212--64374253	21	2.0	22	85	4	59	57	0	7	35	1.26
64374273--64374306	15	2.3	15	89	0	50	67	0	2	29	1.05
64383270--64383300	16	1.9	16	100	0	62	54	0	0	45	0.99
64386869--64387100	115	2.0	116	98	0	448	40	11	12	35	1.79
64387101--64387150	26	2.0	25	92	7	84	44	8	0	48	1.32
64387302--64387479	18	10.0	17	72	16	82	67	0	32	0	0.95
64387304--64387375	10	6.6	10	73	17	54	68	0	31	0	0.90
64387304--64387480	24	7.5	23	66	20	82	68	0	31	0	0.94
64387307--64387481	28	6.0	28	68	22	87	68	0	30	0	0.94
64387322--64387481	38	4.3	37	83	10	177	68	0	30	0	0.94
64387324--64387424	10	10.5	10	72	16	79	65	0	33	0	1.00
64387338--64387480	18	7.5	19	69	20	86	67	0	31	0	0.95
64388163--64388214	19	2.7	19	82	8	61	26	0	7	65	1.20
64388250--64388305	28	2.0	28	93	6	96	37	8	0	53	1.32
64395356--64395384	14	2.1	14	100	0	58	37	6	0	55	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64397757--64397794	18	2.1	18	90	0	58	15	44	5	34	1.69
64397760--64397801	18	2.3	18	83	0	57	21	47	2	28	1.63
64398865--64398947	27	3.1	27	83	0	121	10	43	20	25	1.84
64398973--64399006	13	2.6	13	95	0	59	0	2	8	88	0.62
64399110--64399134	13	1.9	13	100	0	50	88	12	0	0	0.53
64405401--64405443	16	2.6	16	77	3	50	44	6	4	44	1.52
64411626--64411667	21	2.0	22	81	13	52	47	0	2	50	1.14
64415682--64415730	13	3.5	13	78	21	55	69	0	0	30	0.89
64415683--64415720	17	2.4	16	86	8	51	71	0	0	28	0.87
64416587--64416929	171	2.0	172	99	0	679	43	15	7	33	1.75
64423604--64423634	16	2.0	15	93	6	53	67	0	0	32	0.91
64424290--64424332	20	2.2	20	95	0	77	32	2	23	41	1.67
64430206--64430338	66	2.0	66	100	0	266	29	13	21	36	1.91
64435076--64435248	85	2.0	84	82	5	206	33	16	23	26	1.95
64435695--64436019	168	1.9	168	83	1	418	29	23	28	18	1.98
64441905--64441964	30	2.0	30	90	0	93	41	13	20	25	1.88
64442441--64442484	24	2.0	21	86	13	61	43	4	4	47	1.44
64443038--64443090	22	2.6	19	75	18	52	62	7	0	30	1.23
64448264--64448311	20	2.3	20	78	7	51	75	0	16	8	1.04
64462286--64462325	20	2.0	20	90	0	62	27	10	12	50	1.72
64462271--64462337	34	1.9	35	84	3	91	34	8	10	46	1.70
64462444--64462495	26	2.2	24	78	21	58	59	5	0	34	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64467752--64469657	953	2.0	953	100	0	3812	37	12	17	32	1.87
64471661--64471709	20	2.5	19	80	9	62	30	2	6	61	1.32
64471661--64471714	21	2.7	20	77	8	56	29	1	9	59	1.39
64480371--64480424	26	2.0	28	85	7	76	7	29	7	55	1.55
64486147--64486180	14	2.5	14	95	4	61	50	35	0	14	1.44
64493591--64493631	20	2.0	20	85	4	55	36	0	14	48	1.44
64498099--64498129	9	3.4	9	90	0	53	25	12	22	38	1.90
64502737--64502775	19	2.0	19	85	5	51	20	10	28	41	1.85
64506406--64506456	16	3.4	15	79	10	52	80	5	5	7	1.02
64514849--64514893	2	22.5	2	81	0	54	48	6	2	42	1.41
64517088--64517187	50	2.0	47	80	14	105	54	9	7	30	1.58
64519078--64519122	21	2.1	21	87	0	63	40	2	31	26	1.68
64519099--64519193	33	2.8	34	78	12	113	42	1	26	30	1.62
64527087--64527283	98	2.0	99	98	1	387	21	13	3	61	1.45
64527330--64527367	20	1.9	20	88	0	58	36	0	0	63	0.95
64527403--64527431	3	9.7	3	100	0	58	34	0	0	65	0.93
64527751--64527831	25	3.2	25	72	6	81	29	7	6	56	1.51
64527751--64527840	27	3.4	25	73	8	81	31	7	6	54	1.55
64533210--64533250	21	1.9	22	85	5	57	7	46	4	41	1.53
64536622--64537300	339	2.0	339	97	2	1301	34	18	15	31	1.93
64550077--64550113	19	1.9	19	88	0	56	67	0	0	32	0.91
64559049--64559183	68	2.0	69	86	1	191	41	4	3	50	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64559089--64559191	20	4.7	20	69	22	64	41	2	4	50	1.38
64561451--64561523	31	2.4	29	80	12	85	49	6	17	26	1.72
64566924--64566957	3	11.3	3	100	0	68	67	0	32	0	0.91
64572119--64572179	31	2.0	29	84	9	77	29	0	3	67	1.07
64574767--64574825	28	2.2	25	82	8	64	55	1	10	32	1.43
64574988--64575013	10	2.6	10	100	0	52	84	0	0	15	0.62
64581783--64581946	89	1.8	89	89	0	256	32	17	16	34	1.92
64585679--64585717	19	2.1	19	95	0	69	33	0	0	66	0.92
64592695--64592722	2	14.0	2	100	0	56	50	0	0	50	1.00
64594510--64594564	4	13.8	4	96	0	101	50	23	0	25	1.49
64595575--64595621	15	3.1	15	79	11	51	51	0	17	31	1.46
64599148--64599201	26	2.0	28	89	7	85	55	7	0	37	1.28
64610406--64610450	20	2.2	20	84	0	54	48	6	8	35	1.61
64613491--64613579	45	2.0	45	82	4	108	21	31	5	41	1.76
64624307--64624340	16	2.2	15	94	5	59	17	17	41	23	1.90
64627859--64627928	33	2.1	33	100	0	140	41	8	21	28	1.82
64633849--64633884	18	1.9	19	88	5	56	63	0	0	36	0.94
64635118--64635147	4	7.5	4	92	0	51	50	20	0	30	1.49
64635118--64635158	8	5.1	8	93	0	55	48	14	0	36	1.44
64635118--64635155	12	3.2	12	92	0	58	50	15	0	34	1.45
64636792--64636818	12	2.2	12	100	0	54	40	44	7	7	1.60
64638185--64638230	24	1.9	24	86	8	67	30	2	6	60	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64647300--64647325	6	4.3	6	100	0	52	19	0	0	80	0.71
64647314--64647356	23	1.9	22	85	4	59	23	2	6	67	1.27
64654259--64654300	21	2.0	21	86	4	59	33	2	7	57	1.39
64654834--64654866	11	2.8	12	86	4	50	45	24	3	27	1.68
64657116--64657180	32	2.0	32	100	0	130	27	12	9	50	1.70
64670368--64670409	19	2.2	20	86	4	59	47	0	2	50	1.14
64672162--64672296	69	2.0	69	88	2	200	37	20	12	29	1.89
64678269--64678293	12	2.1	12	100	0	50	24	8	0	68	1.16
64678271--64678312	19	2.2	19	86	4	57	23	7	2	66	1.28
64678905--64678967	18	3.4	19	72	12	60	63	6	1	28	1.28
64678992--64679047	30	1.9	30	85	10	80	55	3	3	37	1.35
64679653--64679746	17	5.1	18	72	16	59	37	1	3	58	1.21
64679649--64679797	30	5.2	30	70	22	97	35	1	3	59	1.22
64679679--64679729	18	2.7	19	80	17	54	39	1	1	56	1.22
64679701--64679761	20	3.0	20	79	9	59	34	0	4	60	1.18
64679728--64679769	20	2.0	21	86	4	59	28	0	7	64	1.20
64679722--64679852	54	2.4	53	79	8	120	30	1	3	64	1.17
64679794--64679825	11	3.1	11	91	8	50	31	0	0	68	0.90
64687718--64687760	20	2.2	20	95	0	77	48	0	11	39	1.40
64691626--64691668	22	2.0	22	90	0	68	37	25	18	18	1.94
64701484--64701516	15	2.1	16	88	5	50	0	12	0	87	0.53
64701484--64701516	16	2.1	16	88	11	50	0	12	0	87	0.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64702675--64702727	26	2.0	27	81	3	63	32	1	1	64	1.15
64703229--64703305	31	2.6	30	83	4	84	19	14	11	54	1.70
64703257--64703328	31	2.3	31	83	4	92	25	11	12	51	1.72
64703524--64703600	32	2.5	31	85	4	86	37	12	14	35	1.84
64703552--64703610	30	1.9	31	82	3	75	44	15	10	30	1.79
64730116--64730300	44	4.2	44	64	13	128	29	21	20	28	1.98
64730011--64730336	132	2.5	132	100	0	652	28	20	23	27	1.99
64733663--64733703	21	1.9	22	85	5	57	21	14	2	60	1.45
64733919--64733963	14	3.2	14	84	12	65	48	33	0	17	1.48
64733921--64733960	7	5.7	7	82	11	55	47	37	0	15	1.45

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210